Taylor A.
Cole
,
Steven R.
Davis
,
Athena R.
Flint
and
Ryan C.
Fortenberry
*
Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi, 38677, USA. E-mail: r410@olemiss.edu
First published on 8th April 2024
The addition of sp-carbon-containing molecules to polycyclic sp3 tetrahedrane (c-C4H4) results in the formation of both o-benzyne (c-C6H4) and benzene (c-C6H6). Since both c-C6H4 and c-C6H6 have been detected in the interstellar medium (ISM), providing additional pathways for their possible astrochemical formation mechanisms can lead to the discovery of other molecules, such as c-C4H4, benzvalyne, and vinylidene (:CCH2). Addition of diatomic carbon (C2), the ethynyl radical (C2H), vinylidene, and acetylene (HCCH) to c-C4H4 is undertaken in individual pathways through high-level quantum chemical computations at the CCSD(T)-F12b/cc-pVTZ-F12 level of theory. The resulting C2 addition pathway proceeds barrierlessly through benzvalyne as an intermediate and reaches a true minimum at c-C6H4, but no leaving groups are produced which is required to dissipate excess energy within an interstellar chemical scheme. Similarly, the C2H addition to c-C4H4 produces benzvalyne as well as its related isomers. This pathway allows for the loss of a hydrogen leaving group to dissipate the resulting energy. Lastly, the HC
CH and :CCH2 addition pathways follow through both benzvalene and benzvalyne in order to reach c-C6H6 (benzene) and c-C6H4 (o-benzyne) as well as H2 as the required leaving group. Although there is a barrier to the HC
CH addition, the :CCH2 addition presents the contrary with only submerged barriers. These proposed mechanisms provide alternative possibilities for the formation of complex organic molecules in space.
Many cyclic hydrocarbons, such as c-C6H6 (benzene)9,10 and c-C6H4 (o-benzyne),6 have been detected toward various astronomical regions, and their existence opens the possibility for new chemistry to be explored. Several C6H4 isomers lie along the potential energy surface between low-energy aromatic structures. One example is benzvalene, which was first synthesized via photochemical reactions of c-C6H6 in the laboratory nearly 60 years ago.11 Other studies delve into the potential mechanisms relating c-C6H6 to c-C6H4 and their additional isomers and derivatives.12,13 This research provides a possible foundation for how such reactions could take place in the gas phase with astrochemical applications clearly in view. Resulting reaction intermediates could serve as possible targets for the QUIJOTE1 or GOTHAM line surveys and the exploration of PAHs in molecular clouds, such as TMC-1.14–20 Beyond PAHs and their related species, other notable sources of carbon in the universe include C2 and its hydrogenated C2-containing affiliates, such as C2H (ethynyl radical), HCCH (acetylene), and :CCH2 (vinylidene).21–24 The diatomic carbon molecule (C2) has been detected in the near IR spectrum of Cyg OB2 No. 12,21 and HC
CH has been previously detected in the IR spectrum of IRC +10° 216, and molecular clouds GL 2591, W3 1RS 5, and OMC-1 IRc2.23,24 :CCH2 is reported to have strong IR intensities for the ν1 CH symmetric stretching at 3025 cm−1, ν2 C
C stretching at 1635 cm−1, ν3 CH2 scissoring at 1165 cm−1, and ν6 CH2 rocking at 450 cm−1.25–27 Although the :CCH2 isomer has not been detected, its strong vibrational intensities provide potential for identification. These hydrocarbons could contribute materials to support complex chemistry and the creation of variable organic structures in the ISM since small molecules like C2 can become potential building blocks for the formation of c-C6H6 and other, more complex, PAHs.28 The growth of such chemistry through the interaction of these molecules may help to provide insights into astronomical spectral observations that have eluded explanation for decades.
Most notably, the unidentified infrared bands (UIRs) are spectral features that have not been definitively linked to any certain molecule to date and are observed in the infrared region of the electromagnetic spectrum toward various astronomical objects.29–32 They were first reported from observations of the planetary nebulae NGC 7027, BD + 30° 3639, and NGC 6572.33 The current hypotheses suggest PAHs as contributing factors to these spectral lines with a possible inclusion of their aliphatic counterparts or mixed aliphatic-aromatics hydrocarbons.34–39 Beyond the infrared, ultraviolet wavelengths may also be applicable to PAHs. In 1965, a 2175 Å ultraviolet extinction bump was discovered in the ISM40 and further supported by the Orbiting Astronomical Observatory 2.41 Observations of this so-called “UV-Bump” have since shown this feature to be widespread and distinct in the Milky Way Galaxy.42 Similarly to the UIRs, this interstellar extinction bump has no known current rationale that explains its existence. However, some speculation as to its provenance includes carbonaceous molecules and PAHs.43–45
One such hypothesis for the origin of the UV-Bump is that of carbonaceous molecular clusters exhibiting a T-carbon molecular structure in which the vertices of a cubic diamond lattice are replaced with a tetrahedral arrangement of carbons. Such an sp3 carbon motif is theorized to be responsible for at least part of the UV-Bump.46 Considering the abundance of neutral hydrogen in the interstellar cosmos,47,48 T-carbons may exist in a hydrogenated form with 40 carbon and 16 hydrogen atoms, subsequently denoted as hydrogenated T-carbons (HTCs). The variable sizes of carbonaceous molecules and clusters in interstellar dust49 may enable HTCs to exist as a mixture of clusters. These HTCs produce a striking absorption peak at roughly the same wavelength as the extinction bump. Then, when combined with other hypothesized molecular clusters such as graphite, MgSiO3, and Fe2SiO4, a well-fitted mixed model is obtained with startling correlation to the UV-Bump.50 Whether HTCs contribute to this 2175 Å feature remains to be seen, but their role in the astronomical carbon budget has not been explored in as much detail as PAHs or their derivatives.
The main HTC molecular building block, c-C4H4 (tetrahedrane), has been subjected to intense research for years due to its high angle strain and kinetic stability. Unlike other platonic species, including cubane and dodecahedrane, tetrahedrane has been elusive in the synthesis process, fostering further research.51–53 The uptick in attention towards increasingly complex hydrocarbons in interstellar environments has brought c-C4H4 some research attention due to its structural prominence and theorized implementation in larger, more complex molecules in the ISM.54–56 This c-C4H4 aliphatic monomer has shown to be a minimum on a potential energy surface57 and is likely stable in cold, low pressure environments, i.e. the ISM. More recently, its rovibrational data obtained from quartic force field calculations reveal two intense vibrational frequencies close in proximity to UIRs, providing possibility for detection in both the ISM and the laboratory.58–60 Because of tetrahedrane's correlation with HTCs, UIRs, and the UV-Bump, further astrochemically-minded research into this organic molecule is warranted. Since c-C4H4 is so strained, reactions with simple, C2-containing molecules could lead to the known interstellar molecule c-C6H4, and may have implication in the larger chemistry of PAHs.
A likely intermediate along the reaction pathway of c-C4H4 and C2 is benzvalyne, another theoretical hydrocarbon. Previous work has shown this structure to be a minimum with a significant dipole moment of 2.6 D and formative correspondence to already-detected interstellar molecules like c-C6H4 along the reaction pathway.12,13 Benzvalyne is shown to be a required intermediate between c-C4H4, c-C6H6, and c-C6H4 in a potential energy surface (PES) that links these species. This bicyclic isomer of c-C6H4 can offer an internal perspective for the pathways of sophisticated hydrocarbons in interstellar environments. Any correlation between these detected and undetected organic molecules can provide additional advantageous results for future detection signal acquisitions in the ISM and understanding of their overall chemistry. Hence, this work will explore reactions of c-C4H4 with C2, C2H, HCCH, and :CCH2. While such reactions are believed to play an important role in astrochemistry, their role in combustion chemistry cannot be neglected as these molecules and their derivatives are known to inflict harmful consequences towards the climate, environment, and overall human health.4,61–65
All reactant, product, and intermediate structures are optimized, alongside harmonic frequency calculations, at the F12-TZ level of theory using the MOLPRO 2022.3 quantum chemical software.81–83 Transition state structures are optimized, followed by the requisite frequency calculations, at the B3LYP84–88/aug-cc-pVTZ72,73,89 level of theory using the Gaussian1690 software package. In order to correctly place these structures along the reaction pathway, a single-point energy calculation is done at the F12-TZ level of theory in MOLPRO at the B3LYP transition state optimized geometry, a method shown to work well for explaining observed, experimental reactions.91,92 Intrinsic reaction coordinate (IRC) calculations93 are performed at the B3LYP/aug-cc-pVTZ level of theory in Gaussian so that the computed transition states correspond to the desired motion along the reaction coordinate.
In some cases, the energy profile of the pathway may not be able to be described through a transition state, or a transition state structure may be difficult to locate. In such situations, a relaxed potential energy surface (PES) scan can be created in order to evaluate the potential surface more rigorously. Relaxed potential energy scans follow the variable corresponding to a given reaction coordinate, such as an interatomic distance or angle, by constraining the geometric variable to a series of values between two points of interest. At each value of this variable, the remainder of the structure is allowed to optimize around it. The electronic energies of each partially-constrained geometry along the coordinate can be plotted and used to visualize a two-dimensional slice of the potential energy surface. Points within each relaxed PES scan are optimized at the B3LYP/aug-cc-pVTZ level of theory, followed by single-point energy calculations at the F12-TZ level of theory, in MOLPRO.
In the addition of C2H to c-C4H4, a PES is generated to model the change in energy as the terminal carbon of C2H approaches a carbon vertex in c-C4H4. Points are created over a 1.0–4.0 Å interatomic range in increments of 0.1 Å. On the C6H6 potential surface, two PESs are constructed. One PES is created to visualize the change in energy as the angle between the migratory hydrogen of TS1a (see below) and the two terminal carbon atoms increases. Points for this scan are generated over a 30°–150° range in increments of 0.3°. The final PES scans over the distance between a carbon vertex in c-C4H4 and a dummy atom placed within the carbon–carbon bond of HCCH. The X–C reaction coordinate variable is varied over a 1.0–4.3 Å range in increments of 0.1 Å.
The PESs discussed above can reveal internal conversions between structures with differing orbital configurations. To visualize how the reaction proceeds through these internal conversions, correlation diagrams are created by plotting the frontier orbitals of structures before and after the internal conversion on the potential surface. Molecular orbital calculations on these structures are done at the RHF/aug-cc-pVTZ level of theory (for closed-shell references) or the ROHF/aug-cc-pVTZ level of theory (for open-shell references) with Gaussian16. Molecular orbital visualizations are created in Gabedit.94,95
![]() | ||
Fig. 1 Reaction pathway for the formation of c-C6H4via C2 addition to c-C4H4 in kcal mol−1. Red dashed lines represent this research, and blue dashed lines from Poland et al.12 |
The imaginary vibrational mode of TS1 has a frequency of 342.5i cm−1 and shifts the two foremost carbons back and forth, providing a connection between I1 and benzvalyne. The −118.2 kcal mol−1 decrease from the reactants implies that additional energy is available for further chemistry after this initial creation of benzvalyne. Also, benzvalyne has been shown to be a possible intermediate towards the creation of c-C6H4.12 Due to these two factors, this previously-researched pathway included in blue in Fig. 1 in order to formulate the connection from benzvalyne to c-C6H4.12 This additional route is recomputed to match the current level of theory and encompasses a multi-transition state barrier from benzvalyne. Benzvalyne, I1, and TS1 are all more than 100 kcal mol−1 lower than the reactants, providing the thermodynamics necessary for chemistry to take place in low-temperature and low-pressure environments. Additionally, the relatively low energy barriers from intermediates to TSs imply that the kinetics should also be favorable.
Alone, this reaction would not be feasible in the ISM or most low-pressure gas phase environments, unfortunately. When combined with the reactive steps stemming from c-C4H4 and C2, an overall favorable reaction mechanism is formed. Notably, c-C6H4 is −224.3 kcal mol−1 lower than the combination of c-C4H4 and C2. However, since no leaving group is present that would result in isolation of c-C6H4, this formation pathway is less feasible.96,97 While radiative stabilization of c-C6H4 is possible in theory, such processes have yet to be observed experimentally for neutral–neutral reactions.98 As procession through an available bimolecular exit channel, if it exists, is often much faster than the corresponding radiative stabilization process for small species,99c-C6H4 is more likely to re-dissociate into reactants or generate nontargeted products on this pathway.
Using the acquired information about the C2 addition reaction pathway, there is potential for c-C4H4 to be a feasible reactant of the already-detected c-C6H4 if some form of a leaving group presents itself through additional reactive connections. However, the most natural place to expect a leaving group would come from the incident molecule and not the c-C4H4, making a hydrogen atom from the closely-related C2H triatomic molecule100 the next step for collisions with the present HTC standin utilized here, c-C4H4.
![]() | ||
Fig. 2 Reaction pathway for the formation of benzvalyne via C2H addition to c-C4H4 in kcal mol−1. Internal conversiona represents the intersection seen in Fig. 3. |
In contrast to the C6H4 potential surface described previously where a transition state separates I1 and benzvalyne, this C6H5 potential surface (where the ethynyl radical and tetrahedrane react) allows I1 and I2 to interconvert through an internal conversion of molecular structures as shown in the scan depicted in Fig. 3. This varied distance between the terminal carbon on the C2H and a carbon on tetrahedrane produces two potential energy wells as described in Section 2 which cross when the distance reaches approximately 2.2 Å. This internal conversion can promote the radiationless interchange between structures of the same orbital symmetry.101–104 While I1 and I2 appear to be structurally different, their orbital spaces are actually closely related. When observing the geometries closest to the exact point of conversion, the two highest-energy occupied molecular orbitals (HOMOs) and the lowest-energy unoccupied molecular orbitals (LUMOs) retain their original symmetry and ordering through this internal conversion as given in Fig. 4. While I1 represents a minimum, I2 is a lower energy isomer. The orbital topologies, ordering, and occupation remain consistent between I1 and I2 as shown in Fig. 4 on both sides of the internal conversion, but the repositioning of the carbon atoms in I2 (to the right of the internal conversion in Fig. 3) optimizes the orbitals slightly differently and produces the lower-energy state. As such, the molecule can shift surfaces readily when the interacting carbon atoms are placed at roughly 2.2 Å from one another. This, of course, could be true for any tetrahedrane carbon as all are equivalent by symmetry.
![]() | ||
Fig. 3 Potential energy scan of the C–C bond between C2H and c-C4H4. Solid and dashed lines represent individual molecular configurations correlating to I1 and I2 in Fig. 2. |
![]() | ||
Fig. 4 Correlation diagram for the four frontier orbitals of structures to the right and left of the internal conversion shown in Fig. 3. |
Moving on to the relationship between I2 and I3 in Fig. 2, the connectivity and achirality of both I2 and I3 show that they are inherently the same molecule with the same energies and capabilities. As I2 at −105.66 kcal mol−1 isomerizes towards I3 through a transition state, either conformation can be created from I1, and both can expel a hydrogen atom as a leaving group.
The departure of the H atom from either I2 or I3 creates four different, bicyclic isomers of c-C6H6. Benzvalyne comes third in stability at −6.3 kcal mol−1 below the reactants, where two other C6H4 isomers lie lower at −9.15 kcal mol−1 and −11.59 kcal mol−1 as given in the upper-right of Fig. 1. In addition to these three, there is an additional isomer of C6H4 that lies above the reactants at 3.6 kcal mol−1 which is unlikely be accessed in the gas phase as it will be higher in energy than the reactants and would require more than 1600 K in ambient temperature. The transition state energies for the interconversion between these isomers creates a further thermodynamic barrier as they are dozens of kcal mol−1 above the reactants’ energy. Hence, once these isomers are made in the gas phase, they cannot interconvert between one another if they are formed in this pathway. The likely Boltzmann behavior for the distribution of these isomer populations implies that benzvalyne will still be able to contribute to the formation of o-benzyne, but it will not be the dominant player. Other reactions would be able to contribute moreso to their populations.
![]() | ||
Fig. 5 Reaction pathway for the formation of c-C6H6 and c-C6H4via HC![]() |
The addition of :CCH2 to c-C4H4 leads to I2, which is a recognizable motif from the aforementioned intermediates of the previous reaction pathways. The inclusion of two hydrogens from the reactant separates this intermediate from the previous structures of similar connectivities. The creation of I2 from :CCH2 and c-C4H4 allows for the formation of the cyclic C6H6 isomers and promotes stabilization from a diatomic hydrogen leaving group. While I2 can also be formed from acetylene combined with tetrahedrane, this reaction may be a non-starter as another step must take place before I2 is created.
HCCH reacting with c-C4H4 leads to I1 at −68.37 kcal mol−1, which then requires an increase of 100.98 kcal mol−1 in order to reach the first transition state, lying at 32.61 kcal mol−1 above the reactants. This transition state, denoted as “TS1b”, is represented as the crossing point between the two potential energy curves seen in Fig. 6 with I1 and I2 as the minima. This scan follows the change in angle of the hydride shift from the bottom to the top-most carbon seen in I1 and I2. The point of crossing occurs at a bond angle of roughly 70° and serves as a maximum between the two intermediates, which interconvert via TS1b. At this geometry the hydrogen migrates across two carbon atoms in a concerted motion according the reaction coordinate and the imaginary frequency normal mode coordinate. However, the height of TS1b not only precludes the formation of I2 from acetylene and tetrahedrane, but it also keeps I1 from being created as any backwards pathways from I2. Hence, once I2 is made from :CCH2 and c-C4H4, its most likely pathway is forward, away from either sets of reactants.
![]() | ||
Fig. 6 Potential energy scan of H–C–C bond angle in TS1 of Fig. 5. Solid and dashed lines represent individual electronic states correlating to I2 and I1 in Fig. 5. |
Consistent with the C2H pathway, another internal conversion immediately after I2, denoted as “internal conversionc” in Fig. 5, rests at −10.33 kcal mol−1 relative to acetylene or −54.18 kcal mol−1 relative vinylidene as the starting materials, and internal conversionc occurs between I2 and the c-C6H6 (benzvalene) isomer. In scanning across the bond distance defined from the mid point of the acetylene and a tetrahedrane carbon vertex, two evident energetic wells (I2 and benzvalene) are formed and have their surfaces cross at an approximate bond length of 3.0 Å (Fig. 7). Subsequently, benzvalene sits at a minimum −88.62 kcal mol−1 below the reactants. Further analysis of internal conversionc showcases similar results as Fig. 4. At the geometries adjacent to the conversion maximum, the HOMO, HOMO−1, LUMO, and LUMO+1 retain their orbital symmetry and occupation as given in Fig. 8. The HOMO and the HOMO−1 switch positions between the two isomers as the carbon atoms from the two reactants interact with one another, but the orbital topologies are largely unchanged. This internal conversion is similar to that for the C6H5 PES described in the previous section but with the occupied orbitals shifting positions here. This produces the two minima shown in Fig. 7 which correspond to I2 and benzvalene, respectively from left-to-right, and are given in their stations in Fig. 5.
![]() | ||
Fig. 7 Potential energy scan of X–C bond of HC![]() |
![]() | ||
Fig. 8 Correlation diagram for the four frontier orbitals of structures to the right and left of the internal conversion shown in Fig. 7. |
Once benzvalene forms, it can then progress through three different isomerization pathways. The lower energy two have benzene as an intermediate, but all can lead to o-benzyne. The most energetically favorable pathway progresses through TS8 and then goes down significantly to benzene at −160.9 kcal mol−1. TS6 is higher in energy and leads to I5 before a slight uphill to TS7 and onto benzene. TS6, TS7, and TS8 are all qualitatively similar, but the structures are slightly different with the five-member ring showing different puckering characteristics. However, the most notable difference are the normal coordinates for the imaginary frequencies. Regardless, the formation of benzene is energetically favorable and proceeds through these pinched six-membered rings. Formation of o-benzyne from benzene has been previously shown by Kislov et al.,14 and this is verified here by more modern methods. I6 with two hydrogens on a single carbon is a minimum even with TS9 being very nearly degenerate. All materials lie below all starting materials, even TS10 before ushering off H2 to generate o-benzyne.
The upper pathway from benzvalene to o-benzyne in Fig. 5 proceeds through TS2 and climbs up to TS3. This structure has an energy of −4.55 kcal mol−1 relative to vinylidene and tetrahedrane as the starting materials. Even if the acetylene reaction could produce I2, this pathway would not be energetically accessible. However, :CCH2 as a reactant appears to be necessary to drive this reaction forward in the gas phase. TS3 loses H2 at this step, and creates benzvalyne. The same process to produce o-benzyne as given in the C6H4 pathway is enacted, but TS5 here is 1.77 kcal mol−1 above even the :CCH2 + c-C4H4 starting materials. However, ambient temperatures of 890 K would overcome this barrier, and even room temperature could get notable percentages (∼5%) of I4 to overcome the energy of TS5. Hence, even this upper pathway is not unreasonable but would require warm environments especially for astrochemical considerations.
Footnote |
† Electronic supplementary information (ESI) available: Containing cartesian coordinates for all geometric structures. See DOI: https://doi.org/10.1039/d3cp06199j |
This journal is © the Owner Societies 2024 |