Issue 10, 2013

An automated Pearson's correlation change classification (APC3) approach for GC/MS metabonomic data using total ion chromatograms (TICs)

Abstract

A fully automated and computationally efficient Pearson's correlation change classification (APC3) approach is proposed and shown to have overall comparable performance with both an average accuracy and an average AUC of 0.89 ± 0.08 but is 3.9 to 7 times faster, easier to use and have low outlier susceptibility in contrast to other dimensional reduction and classification combinations using only the total ion chromatogram (TIC) intensities of GC/MS data. The use of only the TIC permits the possible application of APC3 to other metabonomic data such as LC/MS TICs or NMR spectra. A RapidMiner implementation is available for download at http://padel.nus.edu.sg/software/padelapc3.

Graphical abstract: An automated Pearson's correlation change classification (APC3) approach for GC/MS metabonomic data using total ion chromatograms (TICs)

Supplementary files

Article information

Article type
Paper
Submitted
07 Jan 2013
Accepted
07 Mar 2013
First published
07 Mar 2013

Analyst, 2013,138, 2883-2889

An automated Pearson's correlation change classification (APC3) approach for GC/MS metabonomic data using total ion chromatograms (TICs)

B. D. Prakash, K. Esuvaranathan, P. C. Ho, K. K. Pasikanti, E. C. Yong Chan and C. W. Yap, Analyst, 2013, 138, 2883 DOI: 10.1039/C3AN00048F

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