Ai
Gao
,
Chun-Xia
Tang
,
Xi-Wen
He
and
Xue-Bo
Yin
*
State Key Laboratory of Medicinal Chemical Biology and Key Laboratory of Functional Polymer Material (MOE), College of Chemistry, Nankai University, Tianjin, 300071, P.R. China. E-mail: xbyin@nankai.edu.cn; Fax: +86-22 23502458
First published on 23rd October 2012
An electrochemiluminescent (ECL) lead biosensor was developed based on GR-5 lead-dependent DNAzyme for lead recognition and intercalated ruthenium tris(1,10-phenanthroline) (Ru(phen)32+) as the ECL probe. The thiol-modified substrate was first immobilized on the surface of the gold electrode via gold–sulfur self-assembly. Subsequently, the hybridization of DNAzyme and its substrate and the automatic intercalation of Ru(phen)32+ proceeded. Intercalated Ru(phen)32+ can transfer electrons through double-stranded DNA to the electrode and its electrochemiluminescence was excited with a potential step using tripropylamine as the coreactant. In the presence of lead, the substrate cleaves at the scissile ribo-adenine into two fragments. The dissociation of DNAzyme occurs, leading to the releasing of intercalated Ru(phen)32+ accompanied by a decrease in the intensity of electrochemiluminescence. A quantity of lead can be calculated from this decrease. The biosensor is highly sensitive and specific, along with an ultra-low limit of detection of 0.9 pM and a dynamic range from 2 to 1000 pM. It enables analysis of trace amounts of lead in serum samples. The combination of the intercalated-Ru(phen)32+ ECL probe and the cofactor-dependent DNAzyme may push the performance of cofactor-sensing tactics to the extreme.
DNAzymes, catalytic DNA, are regulated by various cofactors. For example, the cofactor hemin binds specific G-quadruplexes to form a horseradish peroxidase-mimicking conjugate.5–7 Lead-dependent DNAzymes cleave specific, partially complementary DNA substrate in the presence of lead ions.8,9 Using lead-dependent DNAzyme, several lead-sensing approaches have been developed. The first fluorescent lead biosensor using lead-dependent DNAzyme was contributed by Lu's group in 2000.10 Later, they developed a colorimetric lead biosensor based on lead-dependent DNAzyme and color changes upon aggregation and disaggregation of gold nanoparticles.11 Great efforts have been made to improve the performance of fluorescent and colorimetric biosensors since.12–17 Yet, the inherent drawbacks derive from the cumbersome equipment utilized and the potential false signals produced by fluorophores or colorants and their high background signals.
Recently, different types of transduction signals, such as chemiluminescence,18,19 cytometry,20 dynamic light scattering,21,22 electrochemistry,23–29 ECL,30,31 surface plasmon resonance,24 and surface-enhanced Raman spectroscopy,32 coupled with lead-dependent DNAzymes have been applied to build lead biosensors. Among them, novel electrochemical platforms are more popular, due to their low cost, simplicity, convenient operation, eminent specificity, and less electro-active contaminants, compared to the fluorescent and colorimetric approaches. In 2006, Plaxco's team announced the first electrochemical lead-dependent DNAzyme biosensor with its core component of a 3′-end-methylene-blue-tagged and 5′-end-thiol-group-modified DNAzyme.29 Several signal-amplified electrochemical methods have been reported implementing gold–DNA nano-clusters,24,25,28 quantum dots,26 and hemin–G-quadruplexes.24
ECL combines the merits of electrochemistry and chemiluminescence. The system of ruthenium complex with tripropylamine (TPA) as coreactant is of particular interest because it enables ultra-low limits of detection. Chemically labeled lead-dependent DNAzymes or their substrates with derivatives of ruthenium tris(2,2′-bipyridine) (Ru(bpy)32+) have been used to design lead biosensors, which achieved limits of detection of 1.4 pM and 11 pM, respectively.30,31 However, labeling and purification of Ru(bpy)32+ derivative-labeled DNA is time-consuming and suffers from contamination and low-yields. While ruthenium tris(1,10-phenanthroline) (Ru(phen)32+) is highly ECL-active, it can intercalate into double-stranded DNA, which provides an alternative strategy for the building of ECL biosensors.33–44 ECL biosensors based on intercalation avoid the shortcomings of chemical labeling. They also benefit from amplified detection caused by more than one Ru(phen)32+ signal molecule intercalated into each double-stranded DNA.
Some lead biosensors are established on the basis that lead induces the formation of G-quadruplexes.23,27,45,46 Similar to aptamers,47 guanine-rich DNA is in an equilibrium conformational state between the unfolded and folded G-quadruplex, and the equilibrium is merely driven to form the G-quadruplex upon the addition of lead, so false signals are a possibility. The ECL strategy using intercalated Ru(phen)32+ may also overcome the false positive signal existing in G-quadruplex-based biosensors because lead-dependent DNAzymes are less likely to encounter the problem of equilibrium. In this paper, we introduce an ECL lead biosensor based on GR-5 DNAzyme for Ru(phen)32+ intercalation and lead recognition with an ultra-low limit of detection of 0.9 pM.
GR-5 DNAzyme: 5′-ACAGA CATCA TCTCT GAAGT AGCGC CGCCG TATAG TGAG-3′
Substrate: 5′-HS–(CH2)6–CTCAC TATrAG GAAGA GATGA TGTCT GT-3′
Tris(2-carboxyethyl)phosphine hydrochloride (TCEP) was purchased from Acros Organics, and 6-mercapto-1-hexanol (MCH) from J&K Scientific. Dichlorotris(1,10-phenanthroline)ruthenium(II) hydrate [Ru(phen)3Cl2·H2O], lead(II) acetate trihydrate [Pb(OAc)2·3H2O], and TPA were purchased from Sigma-Aldrich. All other chemicals were of analytical grade. Gold disk electrodes of 2 mm diameter were employed. Deionized water of about 18.25 MΩ cm was used throughout the experiment. The standard lead solution was prepared by dissolving Pb(OAc)2·3H2O into a buffer of 50 mM Tris–acetate (pH 8.2).
For the building of the lead biosensor, the complementary strand of GR-5 DNAzyme was first immobilized on the gold electrode via the thiol group labeled at the 5′ end (Scheme 1). The hybridization between DNAzyme and its complementary strand made sure that the DNAzyme–substrate complex maintained a double helical structure for the intercalation of Ru(phen)32+. Lead cleaved the phosphodiester bond of the RNA base. The cleavage resulted in the destabilization of base pairing and the dissociation of double strands in the DNAzyme–substrate complex. Correspondingly, the intercalated Ru(phen)32+ was released. The ECL signal from the intercalated Ru(phen)32+ using TPA as a co-reactant was recorded. The difference in ECL intensity before and after the addition of lead was used to quantify lead ions.
Scheme 1 Schematic representation of the ECL lead biosensor based on Ru(phen)32+ intercalation and GR-5 DNAzyme. Left: the hybridization of DNAzyme and the substrate with intercalated Ru(phen)32+ for high ECL emission. Right: the cleaved substrate along with released Ru(phen)32+ after the introduction of lead with the decreased ECL. DNA is drawn in rigid form for better illustration. |
Of note is the fact that two substrates may be combined together through the formation of a di-sulfur bond by the thiol group prior to immobilization. TCEP was added into the buffer to cleave di-sulfur bonds, which benefits the self-assembly of the substrate on the gold electrode surface. To decrease the unspecific adsorption at the active site on electrode surface and to improve hybridization subsequently, the electrode modified with the substrate was immersed in an MCH solution to block the active sites. The self-assembled MCH can also maintain the perpendicular orientation of the substrate.
DNAzyme and its substrate are partially complimentary, and there is a big bump formed after hybridization. Enough area is expected to be occupied for the duplex of DNAzyme and its substrate to stand on the surface of the electrode. A relatively low density of immobilized substrate is therefore pursued. A 4.5 μL of 0.2 μM substrate-containing drop was cast on the electrode surface for 1 h to form the substrate monolayer. Since one Ru(phen)32+ molecule can be embedded in every four base pairs,33,51 five Ru(phen)32+ molecules in total are expected in each duplex in this case. While the chemical label is not needed, the intercalation strategy can increase the number of Ru(phen)32+ for each duplex over the single site labeling for improved sensitivity.30,31
Fig. 1 CVs of (blue) a bare gold electrode, (red) a substrate-modified gold electrode, and (green) a substrate–DNAzyme-modified gold electrode in 5 mM K3[Fe(CN)6] solution containing 0.1 M KCl at scan rate of 0.05 V s−1. |
The possibility of sensing lead by the proposed biosensor was also used to validate the preparation of the biosensor. As shown in Fig. 2, with the increase of the concentration of lead, the ECL intensity decreased. An evident intensity as much as 3463 was observed in lead-free solution adopting the ECL biosensor (blue line). It dropped to 1941 after the reaction with 50 pM lead (red line). The emission decreased sharply to 1086 when 1000 pM lead was introduced (green line). The change between the intensity and lead concentration indicates that the biosensor seems lead-responsive and the decrease of the intensity is related directly to the increase of lead concentration. All the results further validated the immobilization of the substrate and the hybridization of DNAzyme and the substrate. The observed ECL emission also illustrated that Ru(phen)32+ was intercalated into the duplex.
Fig. 2 ECL responses of the proposed biosensor to (blue) blank solution, (red) 50 pM lead, and (green) 1000 pM lead in 0.1 M PBS (pH 7.4) containing 2.5 mM TPA at a constant potential of 1.25 V vs. saturated Ag/AgCl. |
Fig. 3 CVs of (blue) a bare gold electrode, (red) a substrate-modified gold electrode, (green) a substrate–MCH-modified gold electrode, and (purple) a substrate–MCH–DNAzyme–Ru(phen)32+-modified gold electrode in 0.1 M PBS (pH 7.4) containing 2.5 mM TPA at scan rate of 0.05 V s−1. |
The amount of intercalated Ru(phen)32+ was relatively low due to the density of the substrate on the electrode surface. Thus, shown in purple line in Fig. 3, the peak at ca. 1.1 V vs. saturated Ag/AgCl did not appear which corresponds to the oxidation of Ru(phen)32+. An insufficient Ru(phen)32+ level makes the calculation of substrate density unavailable, upon whose oxidation peak area it is based.40
To investigate the mechanism of the oxidation of TPA, CVs of the proposed biosensor in 0.1 M PBS (pH 7.4) containing 2.5 mM TPA at different scan rates were examined (Fig. 4A). At scan rates tested, only anodic peaks corresponding to the oxidation of TPA appeared but no cathodic ones. Hence, an irreversible electrochemical mechanism of TPA oxidation is suggested. Moreover, the peak currents were directly proportional to the square root of scan rates from 0.05 to 0.3 V s−1 (Fig. 4B), which implies that a diffusion-controlled electro-oxidation process happens during TPA oxidation.
Fig. 4 (A) CVs of the proposed biosensor in 0.1 M PBS (pH 7.4) containing 2.5 mM TPA at scan rates of, from inner to outer, 0.05, 0.1, 0.15, 0.2, 0.25, and 0.3 V s−1. (B) Relationship between the peak currents and the square root of scan rates with a correlation coefficient of 0.993. |
Fig. 5 (A) ECL responses of the proposed biosensor to 0, 2, 10, 50, 200, and 1000 pM lead in 0.1 M PBS, at pH 7.4 containing 2.5 mM TPA at a constant potential of 1.25 V vs. saturated Ag/AgCl. (B) Relationship between the intensity decrease and the logarithm of concentrations with a correlation coefficient of 0.992. Error bars represent the standard deviation of three measurements. |
Method | Limit of detection | Ref. |
---|---|---|
ECL | 0.9 pM | Current work |
Fluorescence | 600 pM | 15 |
Fluorescence | 3.7 nM | 16 |
Fluorescence | 300 pM | 17 |
Colorimetry | 32 nM | 18 |
Chemiluminescence | 1 nM | 18 |
Dynamic light scattering | 35 pM | 21 |
Surface plasmon resonance | 0.005 pM | 24 |
Electrochemistry | 300 nM | 29 |
ECL | 1.4 pM | 30 |
ECL | 11 pM | 31 |
Surface enhanced Raman scattering | 20 nM | 32 |
Employing ECL as the transduction signal is considerably favorable to reach such a low limit of detection due to the improved TPA oxidation on the DNA–MCH modified electrode. Two ECL lead biosensors were developed using 8–17 lead-dependent DNAzyme chemically labeled with a ruthenium complex,29,30 and one of them used potential step to excite ECL. The performance of our biosensor is superior to them, because we take advantage of a more specific GR-5 DNAzyme, the potential step technique and the increased number of Ru(phen)32+ molecules per DNAzyme strand. The precision of three replicate ECL measurements using the proposed biosensor was tested. The relative standard deviation of the intensity of the biosensor to blank solution was 2.6%, and 5.9% to 1000 pM lead. To other concentrations, they were below 6.4%. The proposed biosensor is reproducible enough for the real applications.
Fig. 6 ECL measurements using the proposed biosensor in blank solution, 50 pM divalent metal ions including lead, calcium, cobalt, mercury, magnesium, and zinc. Error bars represent the standard deviation of three measurements. |
The concentration of lead in the blood reflects the level of exposure to lead, which is useful for diagnostic purposes. Since there is no evidence to confirm that lead below a threshold amount will not hazard human health, devices that achieve ultra-low limits of detection with high sensitivity and precision are required. The ECL measurements of lead using the proposed biosensor in human serum are summarized in Table 2. The results of the standard protocol ASV, using a microelement analyzer that is operated in hospitals, were used to validate the precision by comparison. After the sample was digested and diluted with 50 mM Tris–acetate (pH 8.2), the lead level was determined with the same procedure as was used for the determination of lead in a standard lead solution, except the reported value of ECL is converted to the lead content in blood samples before digestion and dilution. The measured results from the two methods agreed with each other, implying that the proposed biosensor is selective and could be an alternative way for determining lead levels in blood.
Method | Measurement/μg L−1 | ||||
---|---|---|---|---|---|
#1 | #2 | #3 | #4 | #5 | |
ASV | 119 | 10.8 | 5.41 | 2.70 | 1.03 |
ECL | 112 | 10.5 | 5.29 | 2.54 | 0.97 |
This journal is © The Royal Society of Chemistry 2013 |