Fumiko Okadaa and
Kenichi Morigaki*ab
aGraduate School of Agricultural Science, Kobe University, Rokkodaicho 1-1, Nada, Kobe 657-8501, Japan
bResearch Center for Environmental Genomics, Kobe University, Rokkodaicho 1-1, Nada, Kobe 657-8501, Japan. E-mail: morigaki@port.kobe-u.ac.jp; Fax: +81-78-803-5941
First published on 25th November 2014
The localization of lipids and proteins in microdomains (lipid rafts) is believed to play important functional roles in the biological membrane. Herein, we report on a micropatterned model membrane that mimics lipid rafts by quantitatively controlling the spatial distribution of lipid phases. We generated a composite membrane of polymeric and fluid lipid bilayers by lithographic polymerization of diacetylene phospholipid(1,2-bis(10,12-tricosadiynoyl)-sn-glycero-3-phosphocholine: DiynePC). The composite membrane comprised polymer free-region (R0), partially polymerized region (R1), and fully polymerized region (R2). As a ternary mixture of saturated lipid, unsaturated lipid, and cholesterol was introduced into the voids between polymeric bilayers, liquid-ordered (Lo) and liquid-disordered (Ld) lipid phases were accumulated in R0 and R1, respectively. Local enrichment of Ld phase in R1 (and Lo phase in R0) was enhanced with a heightened coverage of polymeric bilayer in R1, supporting the premise that polymeric bilayer domains are inducing the phase separation. The pattern geometry (the area fractions of R0 and R1) also affected the enrichment due to the balance of gross Lo/Ld area fractions. Therefore, we could control the local Lo/Ld ratios by modulating the pattern geometry and polymer coverage in R1. Micropatterned model membrane with quantitatively controlled distribution of Lo/Ld phases offers a new tool to study the functional roles of lipid rafts by enabling to separate membrane-bound molecules according to their affinities to Lo and Ld phases.
In the case of SPBs, micropatterning techniques have been applied to generate arrayed patches of Lo and Ld phases in the model membranes.11–16 For example, Yoon et al. accumulated Lo and Ld phases on a silicon substrate by locally modulating the surface curvatures. Lo and Ld phases were enriched on the flat and corrugated surfaces, respectively, due to the difference in bending energy.11 Some other studies have also exploited the different bending energies of Lo and Ld phases to realize patterned accumulation.12–14 Alternatively, some studies utilized kinetic effects to realize a patterned phase separation by using photolithography and micro-fluidics.15,16 Patterned Lo/Ld phases with controlled size and spatial distribution would provide a model membrane for systematic in vitro parallel assays of the lipid-raft-related functions.
We have previously developed a methodology to create patterned Lo/Ld phases by using a composite membrane of polymeric and fluid lipid bilayers.17 The polymeric bilayer was lithographically generated from a diacetylene phospholipid by UV illumination.18 The density of polymeric bilayer domains could be locally modulated by applying varied UV doses and removing non-reacted monomers with a detergent solution (Fig. 1(A)).19,20 As a fluid bilayer containing a mixture of saturated lipid, unsaturated lipid, and cholesterol was incorporated, saturated lipid and cholesterol (Lo domains) were enriched in the polymer-free region (R0), whereas unsaturated lipid (Ld domains) was enriched in the partially polymeric region (R1) (Fig. 1(B) and (C)).17 A fluorescent phospholipid (TR-PE) was used as the marker of Ld phase.21 Selective binding of dye-conjugated cholera toxin subunit B (CTB-488) to a glycolipid (GM1) was used to detect Lo phase22 (representative fluorescence micrographs of the phase separation process are shown in ESI (Fig. S1†)). We inferred that the driving force of the patterned Lo/Ld phase separation was the local bending of fluid bilayer at the boundary with polymeric bilayer, since a slight mismatch of the thickness is expected between polymeric and fluid bilayers.17 Due to the higher energetic penalty of bending, Lo domains are expected to be excluded from the boundaries, resulting in the accumulation of Ld domains around polymeric bilayer domains.23,24
In the present work, we report that we can generate a micropatterned membrane with quantitatively controlled local Lo/Ld ratios. Although a number of techniques have been reported for patterning Lo/Ld phases, previous studies, including our work, have shown only qualitative separation of Lo and Ld phases. However, quantitatively controlled distribution of Lo/Ld phases and associated molecules in pre-designed patterns would be desirable for quantitatively evaluating the functional roles of lipid rafts. We established a methodology to modulate the local Lo/Ld ratios through two experimentally controllable parameters. The first parameter is the area fractions of partially polymeric and polymer-free regions in the pattern. The second parameter is the area fraction of polymeric bilayers within the partially polymeric bilayer region. Well-defined separation of Lo and Ld phases should offer a new tool to study the functional roles of lipid rafts by enabling to separate membrane-bound molecules according to their affinities to Lo and Ld phases.
Polymerization of DiynePC bilayers was conducted by UV irradiation using a mercury lamp (UVE-502SD, Ushio, Tokyo, Japan) as the light source. A closed system that comprised a water reservoir, a pump, and a cell (ca. 4 mL volume) was used. The water reservoir was depleted of oxygen by purging with argon.19 Oxygen-free water was circulated continuously by the pump through the cell where polymerization of the bilayers was conducted. The cell had two walls on the opposite sides, one being the sample (the SPB was inside the cell) and the other being a quartz window through which UV light was illuminated. Desired patterns were transferred onto the SPB in the polymerization process by illuminating the sample through a mask (a quartz slide with a patterned chromium coating) which was placed directly on the SPB. After sufficient circulation of deaerated water (typically for 15 minutes), the pump was stopped and the polymerization was started. The applied UV intensity was typically 7 mW cm−2 at 254 nm and the UV dose was varied by changing the illumination time. After the UV irradiation, non-polymerized DiynePC molecules were removed from the substrate surface by immersing in 0.1 M SDS solution at 30 °C for 30 min and rinsing with Milli-Q water extensively. The polymerized bilayers were stored in Milli-Q water in the dark at 4 °C.
The patterned membrane consisted of polymer-free region (R0), partially polymeric region (R1), and fully polymerized region (R2) (Fig. 1). These patterns were generated by the successive UV exposure of monomeric membrane using two different photomasks (100 μm squares/8 μm circles or 10 μm squares). We varied two experimental parameters to modulate the phase separation. First, the area fractions of R0 and R1 (A0 and A1: A0 + A1 = 1) were varied by changing the pattern geometries. Second, the fraction of the polymeric bilayer in R1 (p) was changed by the applied UV dose for polymerization. These parameters are schematically summarized in ESI (Fig. S2†).
We first incorporated DOPC/TR-PE into the patterned membrane to estimate the area fraction of the polymeric bilayer in R1 (p). After the fluorescence microscopy observation, DOPC/TR-PE was removed by immersing the sample in 0.1 M SDS at 30 °C for 30 min and extensively rinsing with Milli-Q water. Subsequently, DOPC/SM/Chol (1:1:1) with GM1 and TR-PE (1 mol% each) was introduced into the voids and incubated at 25 °C for 1–3 days (although phase separation started immediately after the introduction of fluid bilayer, we waited long enough to complete the phase separation17). After the completion of phase separation, we observed the same positions of patterned membrane.
p = 1 − (ITR1/ITR0). | (1) |
The obtained p values are given in Fig. 2. After evaluating the p values, we removed DOPC/TR-PE with a detergent solution (0.1 M SDS, 30 min at 30 °C: this treatment did not alter polymeric bilayer domains20) and incorporated a new lipid membrane (DOPC/SM/Chol (1:1:1)) that separated into Lo and Ld phases. The membrane contained TR-PE and GM1 (1 mol% each). After incubation, TR-PE was enriched in R1, as evidenced by the higher fluorescence intensity in R1 compared with R0, in spite of the fact that there was less fluid membrane in R1 (note the inverted contrast between the upper and middle panels). Fluidity of the membrane in R1 was confirmed by the fluorescence recovery after photobleaching (FRAP) measurements (ESI, Fig. S3†). After observing the distribution of TR-PE, we added CTB-488 to detect Lo phase. CTB-488 was preferentially found in R0 (lower panels). The line profiles of fluorescence intensities confirmed the inverted accumulation of TR-PE and CTB-488 (ESI, Fig. S4†). Comparing the middle panels of (B) and (C), we note that the fluorescence intensity of TR-PE in R1 was higher for the sample having a larger p (C). Concomitantly, the fluorescence of CTB-488 in R0 was more prominent in this sample (bottom panel). These observations suggested that a higher density of polymeric bilayer in R1 enhanced the patterned separation of Lo and Ld phases. The local enrichment of TR-PE and CTB-488 was evaluated from the fluorescence intensities in R0 and R1 (ITR0, ITR1, ICTB0, ICTB1) using the following equations (the background fluorescence intensities were subtracted from the measured intensities to obtain the true fluorescence intensities of TR-PE and CTB-488):
Enrichment of CTB-488 in R0: DCTB0 = (ICTB0/ICTB1)(1 − p). | (2) |
Enrichment of TR-PE in R1: DTR1 = (ITR1/ITR0)/(1 − p) | (3) |
The fluorescence intensity in R1 was normalized with the area fraction of fluid bilayer (1 − p), considering the fact that the region contained less fluid bilayer due to polymeric bilayer. The obtained values of DTR1 and DCTB0 are given in Fig. 2. Enrichment of Lo and Ld phases in R0 and R1 was enhanced for a sample with a higher p value ((B) and (C)).
To evaluate the effects of polymeric bilayer on the phase separation, we measured the enrichment of TR-PE and CTB-488 (DTR1 and DCTB0) in samples with systematically varied p (we generated patterned samples with varied UV doses to obtain different p values). The two pattern geometries shown in Fig. 2 (A1 = 0.75 and A1 = 0.95) were used. The plot of DTR1 versus p is summarized in Fig. 3(A). DTR1 increased with the p value. For low p values, DTR1 was close to 1, as expected, and increased gradually with p. The increase was more prominent for higher p values. In the case of the membrane with A1 = 0.95, DTR1 increased very steeply as the p value exceeded 0.7 (Fig. 3(A)). The plot of DCTB1 versus p also shows that more CTB-488 molecules are localized in R0 for a higher p value (Fig. 3(B)). The data for CTB-488 were rather scattered, presumably due to the effects of non-specific adsorption, although we suppressed it by applying a blocking agent (BSA). These results clearly show that the patterned phase separation is positively correlated with the amount of polymeric bilayer domains.
Fig. 3 Enrichment of TR-PE in R1 (DTR1) (A) and CTB-488 in R0 (DCTB0) (B) in patterned samples with varied p. The two pattern geometries in Fig. 2 (A1 = 0.75 and 0.95) were used. Each data point represents the evaluation from a single fluorescence micrograph. Results from at least four independent samples were compiled. |
Localization of TR-PE and CTB-488 in the patterned membranes reflects the accumulation of Ld and Lo phases in R1 and R0, respectively. We estimated the occupied area fractions of Ld phase in R0 and R1 ( and ) from the observed enrichment of TR-PE in R1, assuming the following two conditions. First, we assumed that the gross area fractions of Lo and Ld phases were 0.5 (equal area of the two phases) for the lipid composition used (DOPC/SM/Chol = 1:1:1), as previously estimated by the atomic force microscopy observations.28 Second, we assumed that the area fraction of Ld phase was proportional to the fluorescence intensity of TR-PE, since TR-PE was predominantly partitioned in the Ld phase. By applying these boundary conditions to the experimentally obtained enrichment of TR-PE in R1 (DTR1 in Fig. 3(A)), we could calculate the area fractions of Lo/Ld in R0 and R1 (eqn (4)–(6)).
(4) |
The total areas of Ld domains after the phase separation should be equal to the gross area of Ld phase:
(5) |
From the eqn (4) and (5), the area fraction of Ld phase in R0 can be calculated as follows:
(6) |
The estimated area fractions are shown in Fig. 4. For A1 = 0.75, decreased and increased progressively with p, indicating enrichment of Lo and Ld phases in R0 and R1, respectively. On the other hand, in the case of A1 = 0.95, decreased with p, whereas increased only slightly, indicating that R0 consisted mostly of Lo phase, whereas R1 remained a mixture of Lo and Ld phases. This asymmetric enrichment can be understood by considering the fact that R0 is much smaller compared with that of R1 (A0 = 0.05 and A1 = 0.95). As a consequence, a part of the Lo phase should have remained in R1, even if R0 was highly enriched with Lo phase.
Fig. 4 The area fractions of Ld phase in R0 and R1 were estimated from the enrichment of TR-PE in Fig. 3(A). We assumed that the gross area fractions of Lo and Ld phases were 0.5 for the lipid composition used. Open circles: Ld phase in R1 (); filled circles: Ld phase in R0 (). |
The results in Fig. 4 demonstrate that we can quantitatively control the local Lo/Ld ratios in a patterned membrane by the pattern geometry (area fractions of R0 and R1) and the polymeric bilayer fraction in the partially polymeric region. This feature enables to create an array of model membranes with varied local Lo/Ld ratios. Fig. 5 shows a patterned membrane that has four regions with different polymeric bilayer coverages, a polymer free region (a), two partially polymeric regions (b and c), and a fully polymeric region (d). By incorporating DOPC/TR-PE, we could estimate the area fractions of polymeric bilayers in (b) and (c) to be 0.02 and 0.48, respectively (Fig. 5(A)). Subsequently, we incorporated DOPC/SM/Chol (1:1:1) containing GM1 and TR-PE (1 mol% each), and observed that TR-PE and CTB-488 were distributed in the three regions ((a)–(c)) according to the densities of polymeric bilayer domains. TR-PE was most accumulated in the region (c) where the density of polymeric bilayers was highest (except for the fully polymerized region (d)) (Fig. 5(B)), whereas CTB-488 was most accumulated in the polymer-free region (a) (Fig. 5(C)) (enrichment of TR-PE at the boundaries between the regions (b) and (d) was caused presumably by the partial polymerization at the boundary of these regions). From the fluorescence intensities of TR-PE, we evaluated the fractions of Ld phase in each region to be 0.24 (a), 0.34 (b), and 0.96 (c) (the Lo/Ld ratio could not be quantified in the fully polymeric region).
An important feature of the present micropatterning approach is the fact that polymeric and fluid bilayers are forming a continuous, two-dimensional composite membrane. Therefore, the phase separation is induced by the structural element (polymeric bilayer domain) embedded within the membrane. It is in contrast with other approaches which generally utilize the interactions of the membrane with the substrate surface for patterning Lo and Ld phases.11–16 The fact that the present approach does not rely on the interaction with the substrate should allow us to construct a model membrane on a wider variety of substrates. In the future, it may be possible to detach the membrane from the substrate with a hydrophilic polymer cushion and suspend it in a similar fashion as black lipid membranes.29,30
There are also some technical limitations at present. The phase separation takes quite a long time to complete (several hours to several days). The rate is presumably limited by the slow diffusion of lipid domains on the glass substrate. It has been reported that lateral diffusion of large domains is hindered due to the frictional drag on the substrate.31 Another important factor to be considered is the effect of embedded polymeric bilayers on the diffusion of membrane-bound molecules. Our previous studies have suggested that the lateral diffusion coefficients of lipids decreased proportionally with the polymer fraction.20 The retarded diffusion may affect the distribution of membrane-bound molecules by the kinetic effects. These technical hurdles must be mitigated by optimizing the pattern geometry and the amount of polymeric bilayer. It is also important to note that information on the gross area fractions of Lo and Ld phases for the lipid composition used is needed to determine the Lo and Ld fractions in R0 and R1 from the experimentally observed distributions of marker molecules (e.g. TR-PE) (Fig. 4). The Lo/Ld fractions have been mostly determined from the microscopic observation of giant vesicles.22,32 Since the Lo/Ld fractions may slightly vary for SPBs and giant vesicles due to the presence (or absence) of the solid support, the total area fractions should be evaluated using an SPB. The effects of polymeric bilayer domains on the phase behaviors of lipid membranes should be evaluated, as well.
In summary, a patterned composite membrane of polymeric and fluid bilayers can quantitatively control the local distribution of membrane-bound molecules according to their affinities to Lo and Ld phases. By changing the pattern geometry (R0/R1 area fractions) and polymeric bilayer coverage in R1, we can modulate the local Lo/Ld ratios with a designed pattern. A potential application of the patterned membrane should be to measure the partitioning of membrane-bound proteins to Lo and Ld phases. It is commonly conceived that the association of proteins with lipid rafts is playing important functional roles.33,34 Therefore, quantitative evaluation of protein partitioning into lipid rafts is an important issue. Conventionally, enrichment in detergent-resistant membranes (DRMs) was used to evaluate the association of proteins with lipid rafts.35,36 A more quantitative approach was recently developed by the microscopic observation of giant vesicles.37,38 Micropatterned model membrane with controlled distribution of Lo/Ld phases provides new possibilities to gauge the association of proteins to lipid rafts. Since patterned membranes are amenable to parallel analyses, it should significantly facilitate the determination process. Furthermore, we can construct an array of model membranes with multiple Lo/Ld ratios, as shown in Fig. 5. Such membranes may find various biomedical applications, including the separation of membrane bound molecules in combination with an electrophoretic or fluidic devices.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/c4ra09981h |
This journal is © The Royal Society of Chemistry 2015 |