Jess
Healy
*ab,
Tim
Rasmussen
c,
Samantha
Miller
c,
Ian R.
Booth
c and
Stuart J.
Conway
*a
aDepartment of Chemistry, Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford, OX1 3TA, UK. E-mail: stuart.conway@chem.ox.ac.uk; jess.healy@ucl.ac.uk
bDepartment of Pharmaceutical and Biological Chemistry, UCL School of Pharmacy, University College London, 29/39 Brunswick Square, WC1N, 1AX, UK
cInstitute of Medical Sciences, University of Aberdeen, Foresterhill, Aberdeen, AB25 2ZD, UK
First published on 15th February 2016
The thiol–ene coupling reaction is emerging as an important conjugation reaction that is suitable for use in a biological setting. Here, we explore the utility of this reaction for the synthesis of glutathione-S-conjugates (GSX) and present a general, operationally simple, protocol with a wide substrate scope. The GSX afforded are an important class of compounds and provide invaluable molecular tools to study glutathione-binding proteins. In this study we apply the diverse library of GSX synthesised to further our understanding of the structural requirements for binding to the glutathione-binding protein, Kef, a bacterial K+ efflux system, found in many bacterial pathogens. This system is vital to the survival of bacteria upon exposure to electrophiles, and plays an essential role in the maintenance of intracellular pH and K+ homeostasis. Consequently, Kef is an appealing target for the development of novel antibacterial drugs.
The Kef system integrates detoxification of electrophiles via GSH metabolites with activation of K+ efflux. Kef's protective effect stems from the associated drop in the cytoplasmic pH on activation of K+ efflux, which is thought to result in protonation of the nucleophilic groups on DNA and proteins – preventing damage caused by exposure to electrophiles.3 Previous work has shown the magnitude and rate of activation of Kef to be a vital determinant in cell survival on exposure to toxic electrophiles. Kef thus presents an appealing target for antibiotic drug development.4,5 The archetypal E. coli Kef system is a complex multi-domain membrane protein, which contains a cytosolic ligand-binding KTN domain. It is inactive in the presence of GSH, and activated by GSH conjugates (GSX) formed on exposure of the cell to electrophiles. Evidence garnered through a combination of classical mutagenesis and crystallographic studies led to the proposal of a model for regulation of K+ efflux by the negative and positive effectors, GSH and GSX, respectively.3 The peptide core is tethered at either end by a number of key basic residues, R416, R516 and N551. Mutagenesis had previously identified these residues as vital for GSH/GSX recognition,6 and crystallography confirmed their importance as key contacts for the peptide backbone (Fig. 1). Crystallography also suggested a conformational change on binding of GSX, particularly around residue F441 that caps the thiol-binding site in what is proposed to be a ‘closed’ conformation. This hypothesis was tested by site directed mutagenesis, where conservative changes (e.g. F441W) had little effect on gating but more disruptive changes (e.g. F441L or F441D) resulted in significantly impaired activation of K+ efflux.3 Thus F441 was proposed to be involved in activation of K+ efflux. ‘Chemical mutagenesis’, i.e. investigation of the effect of varying the nature of the thiol substituent on both binding and gating, was consistent with the proposed model for channel activation.7 In our previous study, a number of ESG (S-N-ethylsuccinimidyl glutathione) analogues were examined and it was found that larger substituents on the nitrogen atom of the succinimidyl ring including tBu (KD = 400 nM), Bn and Cy had a higher affinity for Kef than the parent compound. Additionally, open chain analogues containing 5, 6 or 8 (KD = 4.4 μM) carbons bound with similar affinity to ESG, indicating that an increase in hydrophobicity and size corresponded to an increase in affinity for the target. However, examination of the effect of these GSX on the rate of K+ efflux, revealed a differentiation between affinity and gating. The structurally rigid succinimidyl analogues were efficient activators, whereas the more flexible analogues resulted in a lower rate of K+ efflux, despite similar affinities. These data suggest that a degree of structural rigidity in the S-substituent is required for efficient gating of Kef.
Fig. 1 The GSH (carbon = yellow) binding site of E. coli KefC, highlighting key residues. This figure was generated with PyMOL using the GSH bound E. coli KefC structure (PDB: 3L9W). |
The ligands employed in this work were exclusively formed by conjugate addition of GSH to a range of enones.7 While this approach was informative in revealing that both steric bulk and structural rigidity are required for Kef activation, the range of sulfur substituents that we could employ were necessarily limited by the requirement for electrophilic reactivity. Therefore, we sought to employ alternative chemistry to conjugate the thiol group of GSH to a range of structurally diverse moieties. Recent advances in the photochemical thiol–ene coupling (TEC) reaction led us to investigate the use of this chemistry to produce derivatives of GSH.
The TEC reaction8–10 is emerging as a useful tool in biologically-important conjugation reactions.11 This transformation, which occurs between thiols and alkenes, has many attractive features as it often fulfils the ‘click’ criteria as defined by Sharpless et al.12 The biocompatibility of the reaction conditions also provides a viable alternative to the Cu-catalysed Huisgen cycloaddition for the ligation of peptides and proteins.12–14 Alternatives to the Cu-catalysed Huisgen cycloaddition are important as the use of this reaction can be complicated by the presence of the Cu catalyst.15,16 Until recently, the TEC had been predominantly employed in polymer and materials chemistry, but recent work has firmly established this reaction in the field of bioconjugation, where it has found applications in glycobiology, the synthesis of thioglycosides,17–21 the detection of thio-phosphorylated proteins,22 protein spin labelling,23 tandem application with native chemical ligation for the synthesis of S-modified peptides,24 lipidated peptides,25 the development of lipophilic amino sugar libraries,26 and the synthesis of stapled peptides.27 Waldmann et al. have utilised this methodology in the synthesis of S-lipidated cysteine derivatives, and more recently to the immobilisation of proteins in microarrays.28–31 The TEC has also found wide application in polymer chemistry,32 and biopolymer applications, for example the synthesis of glycol-microspheres.33 Despite these successes, Dondoni11 noted that TEC conditions are not always general and that significant optimisation can be required for each individual system. Additionally, considering the importance of glutathione (GSH, 4) in biological processes, there have been limited examples of the application TEC to this ubiquitous peptide and in each case GSH modification was not the main focus of these studies.17–19,34 Here, we explore the utility of the TEC reaction to generate a diverse library of GSX. This library was subsequently employed to investigate the requirements for high affinity to the ligand-binding domain of the Kef system from a model organism, Shewanella denitrificans (SdKefQCTD).7
Scheme 1 Synthesis of S-dansylglutathione (DNGSH) 3. Reagents and conditions: a. allylamine, DIPEA, CH2Cl2, 100% b. GSH, DPAP, TCEP·HCl, hν, THF/H2O, 40%.7 |
Entry | GSH:dansyl | t (h) | Yieldb (%) |
---|---|---|---|
a 0.5 eq. DPAP used in all cases. Entry 5: degassed THF/H2O, entry 6: degassed DMF/H2O. b Yields quoted are isolated yields following purification by RP C-18 silica gel column chromatography. c Denotes addition of TCEP·HCl. | |||
1 | 2:1 | 17 | 14 |
2 | 2:1 | 34 | 8 |
3 | 4:1 | 5 | 13 |
4c | 4:1 | 5 | 40 |
5c | 4:1 | 5 | 32 |
6 | 4:1 | 5 | 18 |
Compound 2 is a challenging substrate for the TEC. The thiyl radical reacts more readily with electron-rich enes due to its electrophilic nature, thus the initial rate of addition is expected to be slow for this compound.14,32,37 Additionally, compound 2 contains a heteroatom in the allylic position making it sensitive to elimination to the allyl sulfide after the addition step (Fig. 2).37,38 Given our encouraging results with this challenging ene we were keen to further investigate the scope of this reaction for the generation of structurally distinct GSX as probe compounds for Kef.
We optimised the reaction conditions using the simple terminal alkene, decene, as a model system (Scheme 2, 5c). Using the conditions that we had previously developed a moderate yield of 45% was obtained (Table 2, entry 1). To simplify the purification of the product we excluded the reducing agent, which had no significant effect on the yield of S-labeled peptide obtained with this simple substrate. This result indicates that the GSSG during the formation of 3 resulted from the slower reaction rate of 2 in the TEC. Shortening the irradiation time was found to decrease the yield (Table 2, entry 2, 15%), while an increase in the irradiation time gave no improvement (Table 2, entry 6). We found, however, that the amount of initiator could be reduced to 20 mol% without any impact on the isolated yield (Table 2, entry 5), when using decene. With standard conditions established using a simple substrate, a series of alkenes were selected to probe the scope of the reaction, and which would provide a diverse SAR profile for Kef.
Scheme 2 Scope of thiol–ene coupling to alkyl and heteroalkyl substrates. Reagents and conditions: a. alkene (1 eq.), DPAP, THF/H2O, hν. % yields quoted are isolated yields. |
With simple, terminal and unfunctionalised alkenes the yields ranged from 45% to 97% (Scheme 2, 5a, c, d, e, g). Isolation in all cases was by filtration followed by crystallisation from boiling ethanol and water. With hexene as the ene substrate the resulting labeled peptide was obtained in very high yields (97%, 5a). By comparison, reaction with cyclohexene resulted in a significantly lower yield (59%, 5b), as expected due to increased reversibility of the initial thiyl radical addition to the internal alkene (Fig. 2).37
(−)-β-Pinene (5l) and (+)-α-pinene (5k) were both very poor TEC substrates, with less than 1% of the desired adduct isolated in both cases. These low yields could result from a number of factors: (1) slow rate of hydrogen radical abstraction by the stable carbon radical, formed by both 5k and 5l could mask the expected differences in the rate of reaction with the internal vs. external alkene; or (2) rearrangement or fragmentation of the radical intermediate might result in unwanted products. Reaction with heteroatom-containing allylic substrates (5f, h, i) proceeded well in all cases. However, due to the increased solubility of the hydroxyl- and amino-containing adducts (5h and 5i), purification by reverse phase C-18 silica gel column chromatography was required. These compounds are interesting, however, as they provide handles for further synthetic elaboration. The heterocyclic pyrrolidinone (5j) was also well tolerated.
A series of aryl-substituted, vinyl and allyl alkenes were next investigated (Scheme 3). Styrene (Scheme 3, 6f) is a poor TEC substrate,14 and in our hands yielded the desired adduct in moderate yield (53%). Considering the reaction mechanism (Fig. 2), modification of the electronic properties of the aryl ring by substitution was predicted to affect the overall reaction yield, and this was indeed found to be the case. Addition of electron-withdrawing groups in the para-(6a and 6c) or ortho-(6b) positions of the ring resulted in a decreased yield of the adduct. The electron poor vinyl sulfone (6e) also resulted in a low yield of the labelled peptide. The reduced yields in these cases can be rationalised by either the low reactivity of the electrophilic thiyl radical with these electron-poor alkenes, or a slower hydrogen radical abstraction step. For the para-nitro analogue, competing reduction to the aniline was also observed, and consequently the purity of 6a was lower that of the other GSX in this series. Addition of a methylene unit to the 4-fluoro derivative improved the observed yield (6d, 90% cf.6c, 39%), due to the loss of conjugation with the aromatic system. Conversely, addition of a para-methoxy substituent resulted in an increase in yield of the desired adduct (6g, 84%), due to the increased electron density of the alkene in this case. It can be seen from the data presented here that electron-rich alkenes are better substrates for this reaction due to their greater reactivity with the electrophilic thiyl radical. This observation is consistent with the reactivities trends observed in polymer chemistry.14
Scheme 3 Scope of thiol–ene coupling to aryl substrates. Reagents and conditions: a. alkene (1 eq.), DPAP, THF/H2O, hν. % yields quoted are isolated yields. * denotes the use of TCEP·HCl. |
Electron-poor alkenes provide lower yields in this reaction as they react less readily with the electrophilic thiyl radical. Additionally, we found that for particularly challenging substrates the yield may be increased by modification of the electronic properties of the ene via appropriate substitution, or by the addition of TCEP·HCl as a reducing agent (Table 1, entry 4 and Scheme 3, 6c). This second observation is contrary to a report by Scanlan et al., in which an increase in competing radical desulfurisation was observed in the presence of tBu3P as reducing agent, this was not observed in our hands with TCEP as the phosphine reducing agent.24
Two complementary methods were employed to examine ligand binding to SdKefQCTD: differential scanning fluorimetry (DSF)39 and a fluorescence competition assay using DNGSH (3). DSF relies on an increase in fluorescence that results from SYPRO orange binding to hydrophobic regions of a soluble protein that are exposed by thermally-induced protein unfolding, giving a melting temperature for the protein (Tm). Repeating the process in the presence of a ligand (that binds to a folded state of the protein) usually results in an increase in Tm. The change in Tm between the free and ligand-bound protein (ΔTm) correlates with ligand's affinity for the protein.40–42
In depth biophysical evaluation of compound 3, which is employed in the fluorescence competition assay, has been described previously.7 Briefly, the dansyl chromophore is a solvatochromic probe, which is sensitive to the nature of its environment. On binding to SdKefQCTD, i.e. a transition from a hydrophilic to a hydrophobic environment, both an increase in the quantum yield of fluorescence of 3 and a hypsochromic shift in the λmax of emission are observed. Displacement of the probe by a competing ligand results in a drop in fluorescence intensity that can be used to identify new ligands for SdKefQCTD. Quantitative data can be obtained by titration of SdKefQCTD and 3 with increasing concentrations of the competing ligand, and fitting of the resulting binding isotherm. Good correlation of the data obtained using both methods was observed, as previously reported. Additionally FB/FL values (where FB = fluorescence intensity 3 + SdKefQCTD and FL = fluorescence intensity 3 + SdKefQCTD + GSX and an FB/FL > 1 indicates binding), have shown good correlation with the affinities obtained using quantitative methods.7
Evaluation of the aliphatic and heteroatom containing GSX (Scheme 2, 5a–5j) demonstrated that compounds with simple aliphatic substituents bound with a similar affinity to the known activator ESG (KD = 12 μM) (Fig. 3A and B).7 The smaller, more polar, analogues 5h and 5i were found to bind to SdKefQCTD with a lower affinity, similar to that observed for the native ligand GSH (KD = 900 μM) (Fig. 3A and B), and a known weak activator of E. coli KefC, S-lactoyl glutathione (SLG, KD = 900 μM). A small recovery in binding efficiency was observed for the larger pyrrolidinone analogue 5j.
For the aromatic analogues (Scheme 3, 6a–6g), SdKefQCTD binding of a similar magnitude to the positive control ESG was observed in all cases (Fig. 3C and D). The analogue containing the para-nitro (6a) substituent and the unsubstituted derivative 6f were the only cases for which a statistically significant increase in binding affinity relative to ESG was observed in the fluorescence assay (p ≤ 0.05 in both cases). Also of note, a reduction in SdKefQCTD affinity was observed for the 4-F derivative (6c), which could be recovered through the introduction of an additional methylene unit between the sulfur atom and the aromatic ring (6d).
The diverse library of GSX synthesised using this methodology contained analogues with simple aliphatic (cyclic and acyclic) substituents, small polar heteroatom containing functional groups and a series of substituted styrenes. This set of probe compounds was tested for their ability to bind to SdKefQCTD, and it was found that those ligands containing bulky, hydrophobic substituents bound with greater affinity than those with small polar groups. These data enhance our understanding of Kef SAR, and is invaluable for our continued understanding of the Kef system and attempts to determine whether this protein is a therapeutically useful target for antibacterial drugs. The compounds will also potentially find use in the investigation of other GSH-binding proteins.
S-Propyl-3-trimethylsilylglutathione (5f) was isolated as a colourless solid (120 mg, 85%): Rf 0.16 (MeOH/H2O 50:50); [α]20D −29.0 (c 0.5, 2 M NaOH); m.p. 228 °C (dec.) (EtOH/H2O); νmax (thin film)/cm−1; 3372 (m), 3345 (m), 2954 (m), 1672 (s), 1645 (s), 1513 (s) 1432 (m); 1H NMR (400 MHz, D2O/NaOD, pH 12): δ 4.83 (dd, J = 9.2, 4.9 Hz, 1H), 3.65 (d, JAB = 17.3 Hz, 1H), 3.58 (d, JBA = 17.3 Hz, 1H), 3.11 (dd, J = 7.2, 6.0 Hz, 1H), 2.93 (dd, J = 14.2, 4.9 Hz, 1H), 2.69 (dd, J = 14.2, 9.2 Hz, 1H), 2.50–2.39 (m, 2H), 2.30–2.15 (m, 2H), 1.87–1.63 (m, 2H), 1.50–1.38 (m, 2H), 0.44 (t, J = 8.1 Hz, 2H), −0.16 (s, 9H); 13C NMR (125 MHz, D2O/NaOD, pH 12): δ 182.8, 176.6, 176.5, 172.4, 55.9, 53.6, 43.8, 35.7, 32.6, 31.3, 31.2, 24.2, 15.8, −1.8; HRMS m/z (ES−) [Found; (M − H)− 420.1638. C16H30N3O6SSi requires M−, 420.1360.]; m/z (ES−) 420.1 ([M − H]−, 100%); Anal. Calcd for C16H31N3O6SSi: C, 45.6; H, 7.4; N, 9.9. Found C, 45.6; H, 7.4; N, 10.1.
2-(2-Oxopyrolid-1-yl)-S-ethyl glutathione (5j) was isolated as a hygroscopic colourless solid (118 mg, 83%): Rf 0.6 (H2O); [α]20D −27.4 (c 0.5, H2O); νmax (thin film)/cm−1; 3340 (w), 2360 (s), 1740 (s), 1652 (m), 1558 (m); 1540 (m), 1291 (w); 1H NMR (400 MHz, D2O): δ 4.44 (dd, J = 8.6, 5.1 Hz, 1H), 3.84 (s, 2H), 3.69 (dd, J = 6.4, 6.4 Hz, 1H), 3.42–3.33 (m, 4H), 2.94 (dd, J = 14.2, 5.1 Hz, 1H), 2.76 (dd, J = 14.2, 8.6 Hz, 1H), 2.67 (t, J = 6.5 Hz, 2H), 2.47–2.36 (m, 2H), 2.31 (t, J = 7.5 Hz, 2H), 2.09–1.99 (m, 2H), 1.91 (qn, J = 7.5 Hz, 2H); 13C NMR (100 MHz, D2O): δ 178.9, 175.0, 173.8, 173.7, 172.9, 54.0, 53.4, 48.2, 41.9, 41.8, 32.9, 31.5, 31.3, 29.2, 26.3, 17.6; HRMS m/z (ES−) [Found; (M − H)− 417.1440. C16H25N4O7SNa requires M−, 417.1444.]; m/z (ES−) 417.1 ([M − H]−, 100%); Anal. Calcd for C16H26N4O7S: C, 45.9; H, 6.3; N, 13.4. Found: C, 45.8; H, 6.1; N, 13.3.
2-(2-Trifluoromethylphenyl)-S-ethyl glutathione (6b) was isolated as a colourless solid (64 mg, 39%): Rf 0.4 (H2O/MeOH 50:50); [α]20D −16.6 (c 0.5, 2 M NaOH); νmax (thin film)/cm−1; 3434 (w), 1746 (m), 1674 (m), 1645 (m), 1514 (s), 1314 (s), 1233 (m), 1114 (m); 1H NMR (400 MHz, D2O/NaOD, pH 12): δ 7.60 (d, J = 7.8 Hz, 1H), 7.47 (t, J = 7.8 Hz, 1H), 7.37 (d, J = 7.8 Hz, 1H), 7.30 (t, J = 7.8 Hz, 1H), 4.44 (dd, J = 8.9, 4.7 Hz, 1H), 3.66 (d, JAB = 17.2 Hz, 1H), 3.58 (d, JBA = 17.2 Hz, 1H), 3.10 (dd, J = 7.1, 5.9 Hz, 1H), 3.06–2.94 (m, 3H), 2.83–2.68 (m, 3H), 2.28–2.18 (m, 2H), 1.82–1.62 (m, 2H); 19F NMR (125 MHz, D2O/NaOD, pH 12); δ −58.9; 13C NMR (125 MHz, D2O/NaOD, pH 12): δ 182.4, 176.3, 176.3, 171.9, 138.4, 132.2, 131.4, 127.8 (d, J = 29.3 Hz), 126.8, 126.8 (q, J = 5.7 Hz), 124.6 (d, J = 270 Hz), 55.5, 52.9, 43.3, 32.9, 32.4, 32.2, 31.9, 30.8; HRMS m/z (ES−) [Found; (M − H)− 478.1273. C19H23F3N3O6S requires M−, 478.1265.]; m/z (ES−) 478.1 ([M − H]−, 100%); Anal. Calcd for C19H24F3N3O6S: C, 47.5; H, 5.0; N, 8.8. Found: C, 47.7; H, 4.9; N, 9.1.
Footnote |
† Electronic supplementary information (ESI) available: Further experimental details and NMR spectra. See DOI: 10.1039/c5qo00436e |
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