Yu Hongab,
Yi-Rong Liub,
Hui Wena,
Shou-Kui Miaoab,
Teng Huanga,
Xiu-Qiu Pengab,
Shuai Jiangb,
Ya-Juan Fengb and
Wei Huang*abc
aLaboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics & Fine Mechanics, Chinese Academy of Sciences, Hefei, Anhui 230031, China
bSchool of Information Science and Technology, University of Science and Technology of China, Hefei, Anhui 230026, China
cCAS Center for Excellence in Urban Atmospheric Environment, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, Fujian 361021, China. E-mail: huangwei6@ustc.edu.cn
First published on 14th February 2018
Oxalic acid, which is one of the most common dicarboxylic acids, is expected to be an important component of atmospheric aerosols. However, the contribution of oxalic acid to the generation of new particles is still poorly understood. In this study, the structural characteristics and thermodynamics of (C2H2O4)(CH3NH2)n (n = 1–4) were investigated at the PW91PW91/6-311++G(3df,3pd) level of theory. We found that clusters formed by oxalic acid and methylamine are relatively stable, and the more the atoms participating in the formation of a ring-like structure, the more stable is the cluster. In addition, via the analysis of atmospheric relevance, it can be revealed that clusters of (C2H2O4)(CH3NH2)n (n = 1–4) have a noteworthy concentration in the atmosphere, which indicates that these clusters could be participating in new particle formation. Moreover, by comparison with (H2C2O4)(NH3)n (n = 1–6) species, it can be seen that oxalic acid is more readily bound to methylamine than to ammonia, which promotes nucleation or new particle formation. Finally, the Rayleigh scattering properties of clusters of (C2H2O4)(CH3NH2)n (n = 1–4) were investigated for the first time to determine their atmospheric implications.
It has been proved that the concentration of sulfuric acid (SA) vapor can influence nucleation rates observably, according to various field and lab measurements.10,31,32 However, it is difficult for the binary H2SO4/H2O nucleation (BHN) mechanism to explain the measured nucleation rates in the lower atmosphere.33–36 Recently, interest in organic species in atmospheric nucleation has increased.28,37–40 Research into organic acids involved in nucleation, both pioneering laboratory experiments by Zhang et al. and theoretical studies by Yu et al., has pointed out that organic acids have the ability to accelerate both nucleation and the subsequent growth.39,41
Most research has focused on the nucleation of organic with inorganic species, whereas few studies have been carried out on the nucleation of organic acids with organic species. Dicarboxylic acids, which are representatives of familiar organic acids in the atmosphere, are frequently observed at significant concentrations and are expected to participate in nucleation owing to their relatively low vapor pressures.42–45 Oxalic acid, as the most common dicarboxylic acid, is the major constituent of ultrafine and fine aerosol particles.46–48 Martinelango et al.47 indicated that the gas-phase concentrations of oxalic acid are high enough for it to play an important role in nucleation. Moreover, according to field measurements, a strong correlation exists between oxalic acid concentrations and cloud condensation nuclei (CCN), which implies that oxalic acid may accelerate the activation of CCN.49 Recently, it has been found that oxalic acid is effective in binding with ammonia, which indicates that oxalic acid and ammonia may form thermodynamically stable clusters.50 In addition, methylamine is one of the structurally simplest and lowest-molecular-weight organic amines in the atmosphere, and its estimated global emissions total 83 ± 26 Gg N a−1 (109 g per annum).51 Concentrations of methylamine are less than those of ammonia in the atmosphere; however, they have increased strikingly in specific situations such as animal husbandry, fish processing, industry, automobiles, sewage treatment, biomass burning, bacterial culture, and the ocean.52 Methylamine is among the neglected species in atmospheric nucleation. Nucleation studies that involve methylamine are few. Thus, it is of significance and interest to investigate clusters composed of oxalic acid and methylamine molecules.
In this work, the structure and stability of (H2C2O4)(CH3NH2)n (n = 1–4) in the aerosol phase have been thoroughly studied. The basin-hopping (BH) method,53–55 coupled with a density functional theory (DFT) method, was used to search for low-lying structures for each cluster size. The thermodynamic properties were also evaluated. According to the results, the temperature in the formation of (H2C2O4)(CH3NH2)n (n = 1–4) was studied, and the nucleation mechanism of oxalic acid with methylamine was researched in general terms. In addition, Rayleigh scattering properties are among the most significant factors for global climate change.56–59 However, studies of the scattering properties of molecules are lacking, and no relevant references have been found for the (H2C2O4)(CH3NH2)n (n = 1–4) system. Therefore, it is meaningful to investigate the Rayleigh scattering properties of these clusters.
The BH method included two procedures. Firstly, new configurations were generated via the random displacement of atoms; then, these configurations were optimized to the local minima. Secondly, the optimized local energy minima were used as criteria to accept or reject the initially generated structure spaces using the Boltzmann weighting at a finite temperature. To ensure that there were no imaginary frequencies, the frequency calculation for each stationary point was included. The convergence criteria were the default settings in the Gaussian 09 suite of programs.68
Single-point energy calculations were performed at the DF-LMP2-F12/VDZ-F12 (second-order Møller–Plesset perturbation theory-explicitly correlated methods with density fitting) level of theory on the basis of the optimized geometries at the PW91PW91/6-311++G(3df,3pd) level of theory using Molpro 2010.1.69 The zero-point corrected energies [E(0 K)], atmospheric-temperature enthalpies [H(T)] and Gibbs free energies [G(T)] were calculated at the PW91PW91/6-311++G(3df,3pd) level of theory. The PW91PW91 functional was chosen to be the specific DFT method used in this study owing to its fine performance in predictions of structural characteristics and the thermodynamics of cluster formation and satisfactory similarity in comparison with experimental results.7,42,70,71
Tables 1 and 2 present the benchmark work carried out for the (C2H2O4)(CH3NH2)n (n = 1–4) cluster system. The binding energies, thermal contributions to the free energies and resulting Gibbs free energies were calculated using three functionals (ωB97X-D, PW91 and M06-2X) with the same 6-311++G(3df,3pd) basis set. In Table 1, the Gibbs free energy calculated by PW91 is similar to those calculated by M06-2X and ωB97X-D. On comparing the results of the PW91PW91 functional and the DF-LMP2-F12/VDZ-F12 method in Table 2, the difference between ΔEPW91 and ΔECCSD(T) is larger than that between ΔEDF and ΔECCSD(T). It is generally seen that both the PW91PW91 functional and the DF-LMP2-F12/VDZ-F12 method overestimated the binding energies, but the DF-LMP2-F12/VDZ-F12 method was more accurate than the PW91PW91 functional. DFT methods were used to calculate ΔE because of their lower memory consumption. Moreover, the accuracy of electronic energies could be improved by the PW91PW91/6-311++G(3df,3pd) thermodynamic corrections combined with the DF-MP2-F12 single-point energies. Thus, the DF-LMP2-F12/VDZ-F12//PW91PW91/6-311++G(3df,3pd) method used in this study could be viewed as a compromise between accuracy and computational efficiency. A higher level of theory may change the exact order of these clusters in terms of energy, but we believe that the current paper would be a starting point for additional refinements at higher levels of theory.
Method | ΔE (kcal mol−1) | ΔGtherm (kcal mol−1) | ΔG (kcal mol−1) |
---|---|---|---|
ωB97X-D | −15.94 | 11.88 | −4.06 |
M06-2X | −16.41 | 11.75 | −4.66 |
PW91PW91 | −16.08 | 11.27 | −4.81 |
ΔEPW91 | ΔEDF | ΔECCSD(T) | ΔΔECCSD(T)/PW91 | ΔΔECCSD(T)/DF | |
---|---|---|---|---|---|
I-a | −16.08 | −15.34 | −12.66 | 3.42 | 2.68 |
II-a | −27.04 | −26.78 | −23.68 | 3.36 | 3.10 |
II-b | −26.53 | −25.84 | −22.85 | 3.68 | 2.99 |
According to the global minima of (C2H2O4)(CH3NH2)n (n = 1–4) determined in this study, optical properties, such as the depolarization ratios and Rayleigh scattering intensities for natural light, of the pre-nucleation clusters were then calculated. We calculated the anisotropic polarizabilities and mean isotropic polarizabilities of the clusters at the CAM-B3LYP/aug-cc-pVDZ level of theory. The CAM-B3LYP/aug-cc-pVDZ level of theory was a good compromise between efficiency and accuracy. The mean isotropic polarizability ā, anisotropic polarizability Δα, Rayleigh scattering intensity of natural light Rn and depolarization ratio σn are defined as follows:72
(1) |
(2) |
(3) |
Rn = 45(ā)2 + 13(Δα)2 | (4) |
The optimized structures corresponding to the global and local minima are shown in Fig. 1. The intramolecular and intermolecular interaction distances for the global minimum structures are displayed in Fig. 2. As shown in Fig. 2, a strong N⋯H–O hydrogen bond with a length of 1.414 Å is formed in the (C2H2O4)(CH3NH2) cluster. It is observed that the global minimum structure for the (C2H2O4)(CH3NH2)2 cluster is II-a, which possesses a ring configuration. The length of the strong hydrogen bond increases from 1.414 Å to 1.433 Å. We can see that the more molecules participate in the ring-like structure, the more stable is the cluster. Besides, structures with two methylamine molecules on the same side of the oxalic acid molecule are more stable than those in which they are on opposite sides. For (C2H2O4)(CH3NH2)3, we located nine low-lying isomers. Isomer III-a has the lowest electronic energy. In this configuration, proton transfer occurred in which a methylamine molecule acted as an acceptor while the C2H2O4 molecule acted as a donor to form an HC2O4−/CH3NH3+ ion pair. The number of structures increases rapidly for the clusters with three methylamine molecules. Moreover, a dramatic structural change occurs in these clusters. The most stable structure (III-a) possesses a cage-like configuration, followed by ring-like structures. Among the structures with three methylamine molecules on the same side of the oxalic acid molecule, except for III-e, the more atoms participate in the ring-like structure, the more stable is the cluster, which is similar to the case of (C2H2O4)(CH3NH2)2. For the structures with three methylamine molecules on opposite sides of the oxalic acid molecule, the same conclusion applies. For isomer III-e, the hydrogen bond that connects the oxalic acid molecule and the methylamine molecule that does not participate in the ring is weak, and its length is 2.1 Å, which is longer than all the other hydrogen bonds. This may be the reason why III-e is less stable than III-a, b, c, and d. For the (C2H2O4)(CH3NH2)4 clusters, the diversity of structures increases. Two rings are formed for the most stable cluster, and the isomer that possesses a ring configuration is more stable than the isomer without the ring configuration. As shown in Fig. 2, a strong N⋯H–O hydrogen bond with a length of 1.798 Å is formed in the (C2H2O4)(CH3NH2)4 cluster IV-a, while a weaker O⋯H hydrogen bond with a length of 2.080 Å is formed in this (C2H2O4)(CH3NH2)4 cluster. There is also an interesting phenomenon, namely, the difference between the strong and weak bonds in (C2H2O4)(CH3NH2)4 is less than that in (C2H2O4)(CH3NH2)n (n = 1–3).
Fig. 1 Optimized geometries of (H2C2O4)(CH3NH2)n (n = 1–4) at the PW91PW91/6-311++G(3df,3pd) level of theory (red for oxygen, white for hydrogen, gray for carbon and blue for nitrogen). |
RPF = [H2C2O4·iCH3NH2]/[H2C2O4] | (5) |
With reference to the following equation:
(6) |
(7) |
The concentrations of all the clusters were calculated, and the results are listed in Table 3. It is predicted that the concentration of (H2C2O4)(CH3NH2) clusters in the atmosphere is 2.706 × 103 molecules per cm3. These results can only be used as simple approximations, because the atmosphere is much more complex. However, we can perform an overall analysis from the data. RPF values are shown in Table 3 for (H2C2O4)(CH3NH2)n (n = 1–4) at a temperature of 298.15 K. In addition, as the number of binding methylamine molecules increases, the concentrations of the clusters decrease rapidly, which could be because the concentration of methylamine is lower than that of oxalic acid in the atmosphere. We also found that the concentration of (H2C2O4)(CH3NH2)4 clusters is low at typical atmospheric temperatures in the boundary layer.
n | Isomer | ΔG (kcal mol−1) | RPF × 100% | Molecules per cm3 |
---|---|---|---|---|
a PW91PW91/6-311++G(3df,3pd) results.b With respect to the corresponding clusters. | ||||
1 | I-a | −7.52 | 5.41 × 10−7 | 2705.80 |
2 | II-a | −7.10 | 4.42 × 10−19 | 2.21 × 10−11 |
II-b | −6.92 | 3.26 × 10−19 | 1.63 × 10−11 | |
II-c | −6.92 | 3.27 × 10−19 | 1.64 × 10−11 | |
3 | III-a | −7.76 | 2.25 × 10−31 | 1.13 × 10−24 |
III-b | −7.97 | 3.19 × 10−31 | 1.60 × 10−24 | |
III-c | −6.54 | 2.86 × 10−32 | 1.43 × 10−25 | |
III-d | −5.50 | 4.98 × 10−33 | 2.49 × 10−26 | |
III-e | −4.77 | 1.44 × 10−33 | 7.22 × 10−27 | |
III-f | −3.28 | 1.16 × 10−34 | 5.82 × 10−28 | |
III-g | −4.38 | 7.44 × 10−34 | 3.72 × 10−27 | |
III-h | −4.17 | 5.24 × 10−34 | 2.62 × 10−27 | |
III-i | −4.56 | 1.01 × 10−34 | 5.03 × 10−27 | |
4 | IV-a | −7.91 | 4.86 × 10−44 | 2.43 × 10−38 |
IV-b | −8.58 | 1.49 × 10−43 | 7.43 × 10−38 | |
IV-c | −6.24 | 2.88 × 10−45 | 1.44 × 10−39 | |
IV-d | −6.07 | 2.14 × 10−45 | 1.07 × 10−39 | |
IV-e | −6.13 | 2.39 × 10−45 | 1.19 × 10−39 | |
IV-f | −5.43 | 7.27 × 10−46 | 3.64 × 10−40 | |
IV-g | −6.18 | 2.61 × 10−45 | 1.31 × 10−39 | |
IV-h | −5.42 | 7.13 × 10−46 | 3.57 × 10−40 | |
IV-i | −4.48 | 1.47 × 10−46 | 7.34 × 10−41 | |
IV-j | −4.48 | 1.47 × 10−46 | 7.34 × 10−41 | |
IV-k | −1.33 | 7.13 × 10−49 | 3.57 × 10−43 |
Concentrations of methylamine are less than those of ammonia in the atmosphere; however, they have increased strikingly in specific situations such as animal husbandry, fish processing, industry, automobiles, sewage treatment, biomass burning, bacterial culture, and the ocean,52 which will cause an increase in the concentration of (H2C2O4)(CH3NH2)4 clusters.
(8) |
Fig. 3–5 show the temperature dependence of the conformational populations for (H2C2O4)(CH3NH2)2, (H2C2O4)(CH3NH2)3, and (H2C2O4)(CH3NH2)4, respectively. It is observed that the relative populations of the most abundant isomers decrease rapidly while those of the other isomers increase with an increase in temperature.
Fig. 3 Changes in the conformational populations of the low-energy isomers of (H2C2O4)(CH3NH2)2 as a function of temperature. |
Fig. 4 Changes in the conformational populations of the low-energy isomers of (H2C2O4)(CH3NH2)3 as a function of temperature. |
Fig. 5 Changes in the conformational populations of the low-energy isomers of (H2C2O4)(CH3NH2)4 as a function of temperature. |
For n = 2 in Fig. 3, the global minimum structure II-a accounts for the largest proportion, but its proportion undergoes a downward trend from 100 K to 400 K. The proportion of II-b is similar to that of II-c. The difference between II-b and II-c reaches a maximum of 0.28% at a temperature of 100 K and decreases with an increase in temperature to a minimum at T = 400 K.
For n = 3 in Fig. 4, the most stable isomer III-a is predominant in comparison with the other isomers, and its proportion exceeds 50% when the temperature is lower than 400 K. It is obvious that the proportions of the other isomers display a rising trend from 100 K to 400 K, and the proportion of structure III-c has the fastest rate of increase. The most stable structures, namely, III-a, III-b and III-c, have a combined proportion of greater than 95%, which decreases with an increase in temperature.
For n = 4 in Fig. 5, the percentage of isomer IV-b is the highest and is much greater than those of the other isomers, and its proportion exceeds 60% when the temperature is lower than 400 K. An interesting phenomenon is found, namely, that the conformational population could be thought of as a linear function of temperature. The combined proportion of structures IV-a and IV-b exceeds 95% and decreases with an increase in temperature, which is similar to the case of (H2C2O4)(CH3NH2)3 clusters in Fig. 4.
In general, it could be deduced from the Gibbs free energies of the (H2C2O4)(CH3NH2)n (n = 2–4) clusters at various temperatures that the stability order of the isomers would be affected by temperature. As the temperature increases, the ΔG values indicate that the proportion of the global minimum structure decreases, whereas those of other local minimum structures increase. Although no H2O molecules were included in the calculations, significant information was still provided for an understanding of the formation processes of clusters of H2C2O4 with CH3NH2 in this work. Future work is needed to investigate the effects of H2O.
n | Isomer | ΔErel (kcal mol−1) | ΔE0 (kcal mol−1) | ΔH (kcal mol−1) | ΔG (kcal mol−1) |
---|---|---|---|---|---|
1 | I-a | 0 | −15.34 | −17.03 | −7.52 |
2 | II-a | 0 | −26.78 | −26.92 | −7.10 |
II-b | 0.93 | −25.84 | −25.82 | −6.92 | |
II-c | 0.93 | −25.85 | −25.83 | −6.92 | |
3 | III-a | 0 | −37.49 | −37.51 | −7.76 |
III-b | 0.71 | −36.78 | −36.57 | −7.97 | |
III-c | 1.65 | −35.84 | −35.81 | −6.54 | |
III-d | 2.06 | −35.43 | −35.56 | −5.50 | |
III-e | 4.00 | −33.49 | −33.21 | −4.77 | |
III-f | 4.78 | −32.71 | −33.21 | −3.28 | |
III-g | 4.38 | −33.12 | −32.98 | −4.38 | |
III-h | 5.24 | −32.25 | −31.88 | −4.17 | |
III-i | 5.25 | −32.25 | −31.86 | −4.56 | |
4 | IV-a | 0 | −46.4 | −46.68 | −7.91 |
IV-b | 0.12 | −46.82 | −46.49 | −8.58 | |
IV-c | 0.83 | −46.10 | −45.93 | −6.24 | |
IV-d | 1.37 | −45.57 | −45.37 | −6.07 | |
IV-e | 2.29 | −44.65 | −44.24 | −6.13 | |
IV-f | 2.62 | −44.31 | −43.81 | −5.43 | |
IV-g | 2.33 | −44.61 | −44.30 | −6.18 | |
IV-h | 3.16 | −43.78 | −43.25 | −5.42 | |
IV-i | 3.64 | −43.30 | −42.83 | −4.48 | |
IV-j | 3.64 | −43.30 | −42.83 | −4.48 | |
IV-k | 4.42 | −42.52 | −42.80 | −1.33 |
In our previous study concerning clusters of oxalic acid and ammonia molecules, the Gibbs free energies of the clusters ranged from −6.30 kcal mol−1 for (H2C2O4)(NH3) to 9.13 kcal mol−1 for the formation of (H2C2O4)(NH3)n (n = 1–6).77 In comparison with ammonia, methylamine is more readily bound to oxalic acid, which promotes nucleation or new particle formation.
Recent studies78,79 showed that ammonia and alkylamines could promote the formation of sulfate aerosols. Shields et al. focused on a ternary system of sulfuric acid, methylamine, and up to six water molecules to evaluate its implications for aerosol formation.78 More recently, they discussed how ammonia and alkylamines act together and separately in the formation of sulfate aerosols.79 The discussions in both papers are instructive and give us a new direction for future research.
In addition, Fig. 6 shows stepwise changes in the Boltzmann-averaged free energy of binding, which is calculated by the following equation:
(9) |
It is illustrated that the binding strength decreases from 100 K to 400 K for each cluster size, which means that the higher is the temperature, the less favorable is the formation of the clusters. The changes in Gibbs free energy for the (H2C2O4)(CH3NH2)2 cluster are less than those for the other clusters, and the difference in Gibbs free energy between 100 K and 400 K is only 0.03 kcal mol−1, which shows that this structure is less affected by temperature. The results also reveal that the clusters formed from oxalic acid and methylamine molecules could be stable in the atmosphere.
As shown in Fig. 7(a), it was found that the mean isotropic polarizability ā increases nearly linearly as the number of methylamine molecules increases, which is consistent with the study of clusters of oxalic acid with ammonia.75 From Fig. 7(b), we can see that the change in the anisotropic polarizability Δα is non-monotonic with an increase in the number of methylamine molecules. It is seen that the anisotropic polarizability Δα decreases from n = 1 to n = 3 and then increases from n = 3 to n = 4. The mean isotropic polarizability ā increases by approximately 80 au, whereas the change in the anisotropic polarizability Δα is 5 au.
In Fig. 7(c), the Rayleigh scattering intensity of natural light Rn as a function of the number of methylamine molecules is observed to follow a second-order polynomial trend with a correlation coefficient of ρ = 0.99991. In Fig. 7(d), the depolarization ratio σn of the (H2C2O4)(CH3NH2)n (n = 1–4) clusters can be seen as a function of the number of methylamine molecules in the clusters. Owing to the increase in the mean isotropic polarizability ā with the number of methylamine molecules and the relatively gentle variation in the anisotropic polarizability Δα, the depolarization ratio σn exhibits a declining trend with an increase in the number of methylamine molecules.
Concerning the relationship between the number of hydrogen bonds and the polarizability of the cluster obtained from earlier studies, the calculated values of ā were fitted as a linear function of the cluster size n, i.e., H:
= a + b × n + c × O–H + d × N–H | (10) |
(a) Oxalic acid interacts strongly with methylamine, which means that strong hydrogen bonds are formed in the (C2H2O4)(CH3NH2)n (n = 1–4) clusters. It is also predicted that the more atoms participate in a ring-like structure, the more stable is the cluster.
(b) From the thermodynamics and concentration data, it can be seen that there is a high probability that oxalic acid forms clusters with methylamine molecules in the atmosphere. The free energies at different temperatures show that the formation of (C2H2O4)(CH3NH2)n (n = 1–4) clusters is more favorable under low-temperature conditions. As the temperature increases, the ΔG values indicate that the proportion of the global minimum structure decreases, whereas those of other local minimum structures increase. We also found that methylamine is more readily bound to oxalic acid than ammonia, which promotes nucleation or new particle formation. (C2H2O4)(CH3NH2) clusters have an evident concentration in the atmosphere, and these clusters could probably participate in new particle formation. However, as the number of binding methylamine molecules increases, the concentrations of the clusters decrease rapidly, which could be because the concentration of methylamine is lower than that of oxalic acid in the atmosphere.
(c) In this system, it can be indicated that the mean isotropic polarizability has an almost linear relationship with the number of methylamine molecules, whereas the Rayleigh scattering intensity follows a second-order polynomial trend with the number of methylamine molecules.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/c7ra13670f |
This journal is © The Royal Society of Chemistry 2018 |