Open Access Article
This Open Access Article is licensed under a Creative Commons Attribution-Non Commercial 3.0 Unported Licence

Tungsten disulfide nanosheets supported poly(xanthurenic acid) as a signal transduction interface for electrochemical genosensing applications

Jimin Yang , Xuesong Yin, Min Xia and Wei Zhang*
School of Chemistry and Chemical Engineering, Linyi University, Linyi 276005, China. E-mail: zhangweiqust@126.com; Fax: +86-539-7258620; Tel: +86-539-7258620

Received 19th October 2018 , Accepted 22nd November 2018

First published on 27th November 2018


Abstract

Tungsten disulfide (WS2) nanosheets supported poly(xanthurenic acid) (PXa) was used as the signal transduction interface for electrochemical genosensing. The WS2 nanosheets were obtained from bulk WS2 using a simple ultrasonic method. Due to the unique physical adsorption of Xa monomers to WS2, the electropolymerization efficiency was greatly improved, accompanied with an increased electrochemical response of PXa. The obtained PXa/WS2 nanocomposite not only served as a substrate for DNA immobilization but also reflected the electrochemical transduction originating from DNA immobilization and hybridization without any other indicators or complicated labelling steps. Owing to the presence of abundant carboxyl groups, the probe ssDNA was covalently attached on the carboxyl-terminated PXa/WS2 nanocomposite through the free amines of DNA sequences based on the 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide and N-hydrosulfosuccinimide crosslinking reaction. The covalently immobilized probe ssDNA could selectively hybridize with its target DNA to form dsDNA on the surface of the PXa/WS2 nanocomposite. This developed biosensor achieved a satisfactory detection limit down to 1.6 × 10−16 mol L−1 and a dynamic range of 1.0 × 10−15 to 1.0 × 10−11 mol L−1 for detection of circulating tumor DNA related to gastric carcinoma. Selectivity of the biosensor has been investigated in presence of non-complementary, one-mismatched and two-mismatched DNA sequences.


1. Introduction

In recent years, much attention has been focused on utilizing circulating cell-free DNA, specifically the tumor-derived circulating cell-free DNA (circulating tumor DNA, ctDNA) isolated from peripheral blood, as a biomarker of disease status in metastatic cancer patients. In cancer patients, the high cell turnover rate of tumors results in the release of ctDNA. Numerous studies have shown that the ctDNA carries genetic information from the entire tumor genome and can therefore provide insight into clonal heterogeneity and evolution of all solid cancers present at any one time.1–3 Thus, the presence of ctDNA in the blood provides information via a minimally invasive liquid biopsy, eliminating the morbidity associated with serial sampling of tumors for monitoring patients with advanced solid cancers.4–7 Utilizing the ctDNA as the liquid biopsy has significant potential to pave the way toward a better understanding of cancer at the molecular level and improve patient outcomes in the future. The traditional methods for analyzing the ctDNA in the blood mainly include the polymerase chain reaction and DNA sequencing. Although these technologies have led to significant contributions to the ctDNA detection, further application is still restricted by the complicated sample preparation and the interference caused from the constituents of the biological environment.8,9

Layered two-dimensional (2D) transition metal dichalcogenides (TMDCs) with single or few atomic layers have attracted immense interest due to their special structures with high specific surface area and unusual electronic properties.10–12 As one of the newly emerging 2D TMDCs, layered tungsten disulfide (WS2) composed of S–W–S sandwiches in a trigonal prismatic coordination is a typical example of inorganic analogues of graphene,13,14 which has shown promising prospect in the field of electrocatalysts, batteries, supercapacitors, and so on.15–17 Nevertheless, less attention has been paid to its application as the electrode material for electrochemical sensing because the electronic conductivity of WS2 is still relatively low, similar to the most transition metal oxides. To overcome this problem, hybrid materials that incorporated WS2 with high electronic conductive materials seem to be imperative.

As a novel conducting polymer, poly(xanthurenic acid) (PXa), is of much interest due to its several advantages including high redox activity and low toxicity, which has been used for determination of biomolecules.18–20 In this work, Xa was electropolymerized on the pre-obtained WS2 nanosheets substrate to obtain a novel polymer nanocomposite, which was adopted as an ideal interface for electrochemical determination of the PIK3CA gene. The PIK3CA gene existing in the peripheral blood of patients with gastric carcinoma is a kind of ctDNA. The probe ssDNA was covalently linked to the PXa/WS2 nanocomposite via the free amines of ssDNA and the carboxyl groups of PXa, which caused a “signal-off” model with decreased current, ascribed to flexible probe ssDNA strands covering the surface and blocking the electron transfer channel between the electrode interface and the solution.21 After hybridization with the complementary sequence, the conformational changes and the different properties between ssDNA and dsDNA could affect the redox kinetics of the functional nanocomposite,22,23 followed by an increase (“signal-on”) of the redox current. The self-signal changes induced by DNA immobilization and hybridization could be sensitively recognized via cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS). To the best of our knowledge, the integration of an unconventional conductive polymer (PXa) and WS2 nanosheets as the sensing interface for the direct electrochemical detection of DNA hybridization via self-signal changes has not yet been reported.

2. Experimental

2.1. Apparatus and materials

The electrochemical measurements were performed on a CHI660E electrochemical workstation (Shanghai CH Instrument Company, China). A conventional three-electrode system was used with carbon paste electrode (CPE, ∅ = 3 mm) or the modified CPE as the working electrode, a saturated calomel electrode (SCE) as the reference electrode and a Pt wire as the counter electrode. Transmission electron microscopy (TEM) was carried out on a JEM-2100 machine (JEOL, Japan).

Graphite powder (spectral pure, diameter about 30 μm) was purchased from Shanghai Colloid Chemical Plant (China). The bulk WS2 was obtained from Shanghai Aladdin Biological Technology Corporation (China). Xa was acquired from Acros Organics (Belgium). 1-Ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC) and N-hydrosulfosuccinimide (NHS) were obtained from Sigma (USA). N,N-Dimethylformamide (DMF) and phosphate-buffered saline (PBS) solution were provided by Shanghai Reagent Company (China). All the chemicals were of analytical grade and used as received.

The DNA oligonucleotides of the PIK3CA gene related to gastric carcinoma were synthesized by Shanghai Sangon Bioengineering Limited Company (China). Their base sequences were listed below:

Probe DNA (ssDNA): 5′–NH2–AGT GAT TTT AGA GAG-3′;

Complementary DNA (cDNA): 5′-CTC TCT AAA ATC ACT-3′;

One-base mismatched DNA: 5′-CTC TCT A[G with combining low line]A ATC ACT-3′;

Two-base mismatched DNA: 5′-CTC TCT A[G with combining low line]A AT[G with combining low line] ACT-3′;

Noncomplementary DNA (ncDNA): 5′-TAC TCC GCG CTA ACG-3′.

2.2. Electrochemical fabrication of PXa/WS2/CPE

The CPE was fabricated as reported previously.24 The WS2 nanosheets were prepared by a simple ultrasonic exfoliation method. Briefly, bulk WS2 (10 mg) was transferred into DMF (10 mL) followed by ultrasonication for 6 h, and then a homogenous suspension was obtained with the concentration of 1.0 mg mL−1. In order to obtain a smooth surface, the surface of CPE was pre-treated by polishing with a weighing paper. 10 μL of the suspension was dripped on the pre-treated surface of CPE uniformly to obtain the WS2/CPE.

The electropolymerization of PXa was accomplished by immersing the pre-obtained WS2/CPE in 0.3 mol L−1 PBS (pH 5.5) containing 400 μmol L−1 Xa monomers and then cycling the potential between 1.2 V and −0.6 V with a scan rate of 50 mV s−1 for 15 cycles, and the obtained electrode was denoted as PXa/WS2/CPE. For comparison, the PXa/CPE was also fabricated under the similar procedure.

2.3. Immobilization and hybridization of DNA

The ssDNA probes were covalently attached on the PXa/WS2/CPE surface through the free amines of ssDNA probes by using the EDC/NHS cross-linking reaction. The terminal carboxyl groups of the PXa/WS2 nanocomposite were activated by immersion in 0.3 mol L−1 PBS (pH 7.0) containing 2.0 mmol L−1 EDC and 5.0 mmol L−1 NHS for 1 h. The linker/PXa/WS2/CPE was rinsed with PBS (pH 7.0) to wash off the redundant EDC and NHS. 10 μL of PBS (pH 7.0) containing ssDNA probes (1.0 × 10−11 mol L−1) was then pipetted onto the chemically modified electrode and air-dried, rinsed with ultrapure water to remove the unimmobilized ssDNA, and this probe-captured electrode was denoted as ssDNA/PXa/WS2/CPE.

Afterwards, 10 μL of hybridization solution (PBS, pH 7.0) containing cDNA was pipetted onto the probe-modified electrode, followed by thoroughly washed with ultrapure water to remove the unhybridized cDNA. The same procedures as mentioned above were applied to the probe-modified electrode for hybridization with ncDNA (1.0 × 10−11 mol L−1), one-base mismatched DNA (1.0 × 10−11 mol L−1) and two-base mismatched DNA (1.0 × 10−11 mol L−1).

2.4. Electrochemical measurements

The CV measurements were carried out in 0.3 mol L−1 PBS (pH 7.0) from 0.3 V to −0.4 V with a scan rate of 100 mV s−1. The EIS measurements were performed in 0.3 mol L−1 PBS (pH 7.0) with the AC voltage amplitude of 5 mV, and the voltage frequencies ranged from 105 Hz to 1 Hz.

The reported result for every electrode in this assay was the mean of three independent measurements. During the whole experiments, the solution was continuously bubbled with nitrogen for removing the oxygen. Unless specifically noted, all the experiments were carried out at room temperature.

3. Results and discussion

3.1. TEM characterization

TEM were used to characterize the morphology of the PXa/WS2 composite. The representative TEM images of the WS2, PXa/WS2 composite and PXa were displayed in Fig. 1. Apparently, the WS2 (Fig. 1A) showed a nanosheet structure with smooth basal, and the nanosheets overlapped with each other and stacked on the electrode surface. After the polymerization of Xa, the nanosheet surface of PXa/WS2 composite (Fig. 1B) was uneven and showed many swellings. It may be because PXa growing on the surface of WS2 formed relatively rough film. However, as shown in Fig. 1C, PXa formed on the bare CPE without WS2 exhibited an unsmooth morphology with many wrinkles.
image file: c8ra08669a-f1.tif
Fig. 1 TEM images of WS2 (A), PXa/WS2 (B) and PXa (C).

3.2. Electrochemical synthesis of the PXa/WS2 nanocomposite

As shown in Fig. 2A, a quasi-reversible redox (peaks a and b in Fig. 2A) revealing the formation of PXa appeared and increased with the increment of the CV cycles. The specific oxidation peak (peak c in Fig. 2A) could also be seen which indicated the oxidation and electropolymerization of Xa. Obviously, the specific peaks of PXa/WS2/CPE (red line in Fig. 2A) were larger than those of PXa/CPE (blue line in Fig. 2A), which demonstrated that the WS2 nanosheets had a positive influence on the electropolymerization of Xa. This might be due to the unique physical adsorption of Xa monomers with the WS2 nanosheets, which could provide more nucleation sites and effectively improve the electropolymerization efficiency.
image file: c8ra08669a-f2.tif
Fig. 2 (A) Electropolymerization process of Xa at different electrodes: PXa/CPE (blue line) and PXa/WS2/CPE (red line). (B) CVs of the bare CPE (a), PXa/CPE (b) and PXa/WS2/CPE (c) recorded in 0.3 mol L−1 PBS (pH 7.0).

To further investigate the influence of WS2 nanosheets on the electrochemical polymerization, the electrochemical properties of different modified electrodes were compared by monitoring the self-redox signals of PXa in 0.3 mol L−1 PBS (pH 7.0), as displayed in Fig. 2B. No peaks were observed on the bare CPE (curve a). The voltammetric response of the PXa/CPE (curve b) consisted of a couple of redox peaks, which could be ascribed to the self-redox reactions of the electrodeposited PXa film that occur at the electrode surface and the redox process going from quinone structure to hydroquinone structure (inset in Fig. 2A). The current response of the PXa/WS2/CPE (curve c) showed a much larger value compared with that of the PXa/CPE (curve b), demonstrating that the presence of WS2 nanosheets could dramatically enhance the electropolymerization efficient and resulted in an improved electrochemical self-redox response of PXa.

3.3. Optimization of experimental conditions

The amount of WS2 nanosheets could play a key role in the performance of the PXa/WS2 nanocomposite film. With the increase of the amount of WS2 nanosheets, the electrochemical response of the PXa/WS2 nanocomposite increased gradually, and the maximum was obtained at 10 μL of 1.0 mg mL−1 WS2 nanosheets. The low concentration of WS2 nanosheets will result in too thin WS2 film, so the few binding sites of thin WS2 film with Xa result in the weak physical adsorption between WS2 and Xa. However, if the concentration of WS2 nanosheets was larger than 1.0 mg mL−1, the current response decreased, which may be attributed to much thicker WS2 sheets so that they stack together and affect the conductivity of the formed nanocomposite film. Therefore, 10 μL of 1.0 mg mL−1 WS2 nanosheets was selected for the electrode modification in experiments.

The electrochemical response of the PXa/WS2 nanocomposite could also be obviously affected by the electrochemical preparation conditions, such as the electropolymerization cycles. The electrochemical signals of the PXa/WS2 nanocomposite reached a maximum at the 15th cycle, and then decreased with further scans. Therefore, a 15-cycle electropolymerization was chosen in experiments.

3.4. Self-signal monitoring of DNA immobilization and hybridization

The self-redox properties of the PXa layer were investigated to monitor the immobilization and hybridization of DNA on the PXa/WS2 nanocomposite by CV in 0.3 mol L−1 PBS (pH 7.0) and shown in Fig. 3. Just as discussed above, the resulting PXa/WS2/CPE displayed fine electrochemical activities in a neutral environment (curve a). Subsequently, after the NH2-ssDNA was captured through covalent bonding on the surface of the PXa/WS2 nanocomposite, the self-redox signals of the ssDNA/PXa/WS2/CPE decreased significantly (curve b). The probe ssDNA behaves as random coils and possesses the flexible traits, which may change the conformation and block the effective electron transfer along the PXa chains.21 Therefore, the response of the ssDNA/PXa/WS2 layer decreased (“signal-off”). However, when the ssDNA probes were hybridized with the cDNA, an increase of the CV signals (curve c) was observed compared with curve b. Interpretation of the current enhancement upon hybridization might be proposed on the basis of changes in the conformation of DNA. Indeed, the ssDNA behaves as random coils while the dsDNA leads to a more organized surface, through which counter ions along the double-helix structure could diffuse more freely. At the same time, ssDNA is a flexible molecule while dsDNA acts as a rigid rod, and hence the electron transfer rate along the double-helix structure is much faster than that along the single-chain structure.22,23 Therefore, the self-redox signals increased after the hybridization of ssDNA with its cDNA (“signal-on”). The above results demonstrated that the self-redox signal changes of the PXa layer could serve as a simple and efficient tool for direct DNA detection by CV without adding any labels to the ssDNA probes or target molecules and needing any outer indicators.
image file: c8ra08669a-f3.tif
Fig. 3 CVs of the PXa/WS2/CPE (a), ssDNA/PXa/WS2/CPE (b) and dsDNA/PXa/WS2/CPE (c) recorded in 0.3 mol L−1 PBS (pH 7.0).

3.5. Selectivity of DNA hybridization recognition

As a sensitive transduction technique, EIS has been widely used to investigate the interface property change of electrode surface.25 The selectivity of this DNA biosensor was investigated by using the probe ssDNA to hybridize with different DNA sequences of the PIK3CA gene related to gastric carcinoma. After the hybridization of the probe ssDNA, the changes of the Bode plots in 0.3 mol L−1 PBS (pH 7.0) were shown in Fig. 4. Curve a was the Bode plot of the PXa/WS2/CPE. The impedance increased obviously when the probe ssDNA was attached onto the PXa/WS2 nanocomposite (curve f), indicating the successful immobilization of the probe ssDNA. After the hybridization with the cDNA, a dramatic decrease of the impedance was observed (curve b). There are mainly two factors that may influence the change of impedance of the electrode after DNA hybridization. On one hand, it is well-known that dsDNA is more conductive than ssDNA.26,27 On the other hand, the DNA molecules can modulate the work function and the double layer thickness at the surface of the electrode due to the intrinsic negative charge of DNA molecules.28 In this experiment, when the hybridization reaction occurs, an obvious decrease of impedance was observed, indicating that the first factor may occupy the chief status. And therefore the decrease of impedance after DNA hybridization in this experiment can be attributed to the much higher conductivity properties of dsDNA compared to ssDNA. When hybridized with the ncDNA, the impedance (curve e) changed little compared with the curve f, illustrating that no hybridization occurred. The impedance related to the one-base mismatched DNA (curve c) and two-base mismatched DNA (curve d) were larger than the curve b, indicating that complete hybridization was not accomplished due to the base mismatch. The above results demonstrated that the indicator-free DNA biosensor based on the PXa/WS2 nanocomposite had good selectivity for the DNA hybridization recognition.
image file: c8ra08669a-f4.tif
Fig. 4 Bode plots recorded at the PXa/WS2/CPE (a), ssDNA/PXa/WS2/CPE (f), dsDNA/PXa/WS2/CPE (hybridized with cDNA), (b), hybridized with ncDNA (e), hybridized with one-base mismatched DNA (c), and hybridized with two-base mismatched DNA (d) in 0.3 mol L−1 PBS (pH 7.0).

3.6. Quantitative analysis of complementary target sequences

The probe ssDNA/PXa/WS2/CPE was used to quantitatively detect the different concentrations of the complementary PIK3CA gene sequences, and the obtained Bode plots were shown in Fig. 5A. The difference (namely Δlog[thin space (1/6-em)]Z) between the log[thin space (1/6-em)]Z values of the probe-captured electrode and that after hybridization with the cDNA was adopted as the measurement signal. The results showed that the Δlog[thin space (1/6-em)]Z value was linear with the logarithm of the PIK3CA gene target sequence concentrations in the range from 1.0 × 10−15 mol L−1 to 1.0 × 10−11 mol L−1 with the regression equation Δlog[thin space (1/6-em)]Z = 0.049 log[thin space (1/6-em)]C + 0.783 and the regression coefficient (R) 0.9951 (Fig. 5B). The detection limit could be calculated to be 1.6 × 10−16 mol L−1 using 3σ (where σ was the relative standard deviation (RSD) of the blank solution, n = 11). Compared with other reported works for the PIK3CA gene detection with the detection limit of 50 fM and detection range (50 fM to 3200 fM) by localized surface plasmon resonance,29 and the detection limit of 10−17 M and detection range (10−16 M to 10−13 M) by differential pulse voltammetry,30 these results showed that the developed indicator-free impedance detection assay in our work had a favorable sensitivity for electrochemical detection of DNA hybridization.
image file: c8ra08669a-f5.tif
Fig. 5 (A) Bode plots recorded at the ssDNA/PXa/WS2/CPE (a) and after hybridization reaction with different concentrations of PIK3CA gene target sequences: (b) 1.0 × 10−15, (c) 1.0 × 10−14, (d) 1.0 × 10−13, (e) 1.0 × 10−12 and (f) 1.0 × 10−11 mol L−1 in 0.3 mol L−1 PBS (pH 7.0). (B) The plot of Δlog[thin space (1/6-em)]Z versus the logarithm of the PIK3CA gene target sequence concentrations.

3.7. Stability and reproducibility of the DNA biosensor

The stability of the constructed DNA biosensor was tested. It was stored in the refrigerator at 4 °C for one week. No apparent change of EIS signals was observed after one week. In addition, the probe-modified electrode was stored in PBS (pH 7.0) at 4 °C for one month and the decrease of the EIS response was got as 5.68%. The above results illustrated that the prepared DNA biosensor exhibited favorable stability and could be applied for further quantitative assay.

The reproducibility of this hybridization biosensor was measured by detecting 1.0 × 10−15 mol L−1 target sequences with six parallel-made probe-captured electrodes. The results showed that a RSD of 5.8% for the signal changes was estimated, indicating that the biosensor had an acceptable reproducibility for DNA analysis.

4. Conclusions

In conclusion, a novel electrochemical sensing interface for detecting ctDNA related to gastric carcinoma was developed based on WS2 nanosheets supported PXa. The formed PXa/WS2 nanocomposite possessed fine biocompatibility, as well as favorable electrochemical activity in a neutral environment. The self-signal changes of the PXa layer induced by DNA immobilization and hybridization could be sensitively recognized via CV and EIS. The total process is simple, direct and requiring no labelling processes or external indicators, and this procedure may be extremely useful for the cost effective mass production of a new generation of biosensors. The major limitations of the method lie in performing the assay with real blood samples. And we will further apply this sensor platform for the detection of specific DNA hybridization on real blood samples accompanied with the improvement of our experimental conditions.

Conflicts of interest

There are no conflicts to declare.

Acknowledgements

This work was supported by the Shandong Province Natural Science Foundation (No. ZR2017QB013) and the Undergraduate Training Program for Innovation and Entrepreneurship of Linyi University (No. 201810452170).

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Footnote

These two authors contributed equally to this work.

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