Yingxin
Feng
a,
Linsen
Zhou
b,
Qiang
Wan
a,
Sen
Lin
*ab and
Hua
Guo
*b
aState Key Laboratory of Photocatalysis on Energy and Environment, College of Chemistry, Fuzhou University, Fuzhou 350002, China. E-mail: slin@fzu.edu.cn
bDepartment of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA. E-mail: hguo@unm.edu
First published on 14th June 2018
The active-site structure, reaction mechanism, and product selectivity of the industrially important selective hydrogenation of 1,3-butadiene are investigated using first principles for an emerging single-atom Pd catalyst anchored on graphene. Density functional theory calculations suggest that the mono-π-adsorbed reactant undergoes sequential hydrogenation by Pd-activated H2. Importantly, the high selectivity towards 1-butene is attributed to the post-transition-state dynamics in the second hydrogenation step, which leads exclusively to the desorption of the product. This dynamical event prevails despite the existence of energetically preferred 1-butene adsorption on Pd, which would eventually lead to complete hydrogenation to butane and be thus inconsistent with experimental observations. This insight underscores the importance of dynamics in heterogeneous catalysis, which has so far been underappreciated.
Single-atom catalysts (SACs) have recently emerged as a promising alternative to traditional catalysts for catalyzing various chemical transformations, because of their high atomic efficiency and unique reaction mechanisms.7–9 Highly active and selective SACs of the hydrogenation of 1,3-butadiene have been reported by several groups. Zhang et al.,10 for example, found that the hydrogenation of 1,3-butadiene over Au/ZrO2 catalysts has 100% selectivity towards butenes owing to a small number of isolated Au3+ ions on the ZrO2 surface. Sykes and coworkers showed that isolated Pt atoms on a Cu surface can also catalyze under mild conditions the butadiene hydrogenation reaction with high selectivity towards butenes.11 More recently, by using two-dimensional graphene as the support, atomically dispersed Pd has been reported by Yan et al.12 to exhibit near 100% butene selectivity in 1,3-butadiene hydrogenation with 95% conversion at 50 °C.
The observed selectivity in SAC-catalyzed butadiene hydrogenation can be rationalized partially by the fact that an atomically dispersed SAC site is incapable of the di-π-adsorption commonly seen on metal surfaces or nanoparticles,13–17 where the molecular plane is parallel to the metal surface. Rather, the atomic size of the SAC necessitates mono-π-adsorption and preferential hydrogenation of one CC double bond at a time. Nevertheless, SAC catalytic mechanisms are often more complex than this simple geometric argument, particularly on the question of selectivity. Indeed, a sequential hydrogenation mechanism does not automatically lead to selectivity. The selective production of a butene has to stem from either thermodynamic or kinetic obstacles to its further hydrogenation.
To gain a deeper understanding of the selectivity, theoretical insights are very helpful. On the Pt(111) and Pd(111) surfaces, for example, density functional theory (DFT) calculations by Sautet and coworkers have revealed that the selectivity can be attributed to the difference in adsorption energy between 1,3-butadiene (stronger adsorption due to two CC double bonds) and butene (weaker adsorption due to one CC double bond) as well as the different stabilization energies of key radical intermediates.14 However, such a mechanism is unlikely to operate on SACs because the adsorption energy of neither the reactant nor intermediate will be much different, given the fact each SAC can only bind to a single CC double bond.
Liu and coworkers recently investigated the conversion of 1,3-butadiene catalyzed by an Au SAC supported by a ZrO2 surface.18 Their DFT calculations revealed that the first hydrogenation step is with a OH group on the oxide surface followed by abstraction of H adsorbed on Au, while the subsequent hydrogenation toward butane was found to have a similar barrier height as the first hydrogenation step. Arguments against the total hydrogenation were offered, but no direct evidence was presented.18 While this insightful work sheds much light on the catalytic mechanism on metal SACs on oxide supports, neither would it be applicable for SACs on metals11 or on 2D materials,12 as OH groups are unlikely to be present in the latter two systems.
In this work, by combining static DFT calculations with ab initio molecular dynamics (AIMD)19 or direct dynamics20 simulations, the key steps of 1,3-butadiene hydrogenation over a graphene supported Pd SAC (Pd1/graphene) are examined. This system is unique as it offers a clean prototype for understanding the selective butadiene hydrogenation on a structurally well-defined SAC.12 Our DFT calculations pay particular attention to the active-site structure of the SAC and putative catalytic pathways, which are found to be consistent with existing experimental observations. Perhaps more interestingly, the origin of selectivity is revealed by AIMD simulations to be the post-transition-state dynamics in the second hydrogenation step, in which the 1-butene desorbs as the exothermic transfer of a hydrogen atom from Pd supplies sufficient kinetic energy to overcome the adsorption energy. This dynamical event prevails even when there exists a lower energy alternative for the binding of the remaining CC double bond of 1-butene with Pd, which would lead to the total hydrogenation to butane and thus be inconsistent with the experimental observation.
The importance of dynamics in heterogeneous catalysis has recently attracted much attention. For the mandatory initial dissociative chemisorption, detailed experiments have shown that different forms of the reactant energy (vibration vs. translation) promote the dissociation with different efficacies.21–23 However, there has been no example on the influence of dynamics in product branching in surface chemistry. The dynamically driven selectivity demonstrated here is conceptually at odds with the conventional picture in which the potential energy surface (PES) dictates not only the mechanism and reactivity, but also product branching. Specifically in the so-called statistical paradigm,24 a reaction should follow the intrinsic reaction coordinate (IRC) on the PES, which defines the minimum energy path from reactants to the transition state and then to the various products. However, there is increasing experimental and theoretical evidence indicating that this energetically based picture may not be valid for many chemical reactions, in which the avoidance of the IRC after passing through the reaction transition state leads to “unexpected” products.25–31 The key factor in non-IRC reactions is the kinetic energy, which is not accounted for by the PES alone. In a full dynamic characterization of the reaction, as a result, the kinetic energy gained after passing through the transition state can lead trajectories to stray from the minimum energy path. In the system discussed here, the dynamically driven selectivity in the hydrogenation of 1,3-butadiene demonstrates that potential energy is not always the only determining factor in heterogeneous catalysis. Under such circumstances, the dynamics has to be explicitly considered.
Our model of the Pd1/graphene SAC thus consists of one Pd–C and three Pd–O bonds, as shown in Fig. 1, consistent with the observed first-shell peaks of the EXAFS spectrum.12 The oxygen species Oa, which bridges the Pd atom and graphene, corresponds to a phenolic oxygen created by oxidation of graphene.12 The Pd atom is further anchored on the graphene with Ca. To complete the tetra-coordination of Pd, two other oxygen species (Ob and Ob′) are included (Fig. 1a), which are presumably the residues after the removal of the hexafluoroacetylacetate ligands used in the atomic layer deposition of the Pd species.12 Furthermore, we found that an additional oxygen is needed to saturate two carbon atoms in the graphene defect site in order to avoid the formation of two additional Pd–C bonds. This C–O–C moiety is formed on the opposite side of the graphene and serves largely as a structural rather than catalytic motif. As shown in Table 1, the optimized geometry of the SAC yields bond lengths that are in good agreement with the experimental values of the Pd–C and Pd–O bond lengths in the first coordination shell.12 In addition, the presence of second shell carbon atoms in our model is also consistent with the weak peaks in EXAFS.12 The Bader charge analysis indicates that the charge of the Pd atom is +0.69e, consistent with the experimental observation that the isolated Pd atoms on the graphene surface are positively charged.12
Fig. 1 Side and top views of the Pd1/graphene SAC (a) before and (b) after reduction. Color scheme: C, gray; O, red; Pd, blue. |
Bond | Theo. | Expt.12 |
---|---|---|
Pd–Oa | 2.09 | 2.05 |
P–Ob | 2.05 | 2.07 |
Pd–Ob′ | 2.00 | 2.07 |
Pd–Ca | 2.25 | 2.00 |
The SAC structure discussed above is unfortunately not a very active catalyst based on our preliminary DFT calculations of the hydrogenation reaction (not shown here), presumably because of the chemical inertness of the tetra-coordinated Pd. It is noted however that in the experiment the catalyst was pretreated in 10% H2 in Ar at 150 °C, which could conceivably reduce the O moieties bonded to Pd. To explore this possibility, reactions (1)–(3) are examined theoretically:
PdO2/graphene + H2 → Pd(OH)2/graphene | (1) |
Pd(OH)2/graphene + H2 → PdOH/graphene + H2O | (2) |
PdOH/graphene + H2 → Pd/graphene + H2O | (3) |
It was found from DFT calculations that reaction (1) has a large exothermicity of −3.28 eV, indicating that two Pd binding O moieties can be readily reduced to hydroxyl (OH) groups in the presence of H2 (Fig. S1 in ESI†). These two ligands can be further reduced by an additional H2 molecule to form two free H2O molecules in reactions (2) and (3). These two reactions are calculated to have moderate barriers, 0.98 and 0.63 eV, respectively (Fig. S2†). The final activated SAC is thus likely an unsaturated single Pd atom anchored on graphene (Fig. 1b).
The resulting Pd1/graphene SAC model is used below to investigate both the adsorption and catalysis. This SAC is reasonably stable, with a Pd binding energy of −1.87 eV which is calculated from Eb = EPd–support − Esupport − EPd where EPd–support is the energy of Pd-SAC, Esupport is the energy of the support by removing the Pd atom and EPd is the energy of the Pd atom. This is similar to the Pd adsorption energy (−1.75 eV) on CeO2(111).42 The Pd atom has a charge of +0.30e, suggesting a significant cationic character due to charge transfer to its two ligands.
For 1,3-butadiene, we have used the trans-form in our calculations because it is the dominant isomer at room temperature. Since the SAC-catalyzed hydrogenation is sequential, furthermore, no fundamental difference is expected between the cis and trans isomers because the corresponding products (cis and trans-1-butene) are related by a (free) rotation around the middle single C–C bond. As expected, only one CC double bond is capable to bind with the Pd atom, while another CC double bond is tilted from the graphene surface. The length of the adsorbed CC double bond moiety is 1.41 Å, which is elongated by 0.07 Å relative to the isolated molecule, and the Pd–C bond distances are 2.13 and 2.17 Å, respectively. The binding energy is −1.66 eV, much larger than that of H2.
For 1-butene, the most stable adsorption configuration involves the remaining CC double bond attached to the Pd atom. Its adsorption energy (−1.72 eV) is quite similar to that for 1,3-butadiene. For butane, on the other hand, the molecule is found to interact weakly with the Pd atom with a relatively small binding energy of −0.56 eV. For all these adsorption states, the Pd atom keeps its bonds with the substrate carbon atom and the phenolic oxygen of the graphene support.
Fig. 3 Energetics and structures of stationary points along the reaction pathway for the first hydrogenation step of 1,3-butadiene to form 1-butene on the Pd1/graphene SAC. IS: initial state; TS: transition state; IM: intermediate state; FS: final state. The same color scheme as in Fig. 2 is used. |
The first hydrogenation step is rate limiting in this SAC catalyzed reaction. Its barrier of 1.33 eV is higher than that of the Pd catalyzed hydrogenation reaction, which is 1.24 eV on Pd(111).14 This is not inconsistent with the smaller turnover frequency (0.35 s−1)12 on the SAC than that on supported Pd nanocrystals with particle sizes of about 4 nm (>6.5 s−1).43
The first hydrogenation step described above opens the Pd atom up for a further adsorption of H2, because of the conversion of the mono-π-adsorption of 13BD* to a mono-π-adsorption of 2B1R* accompanied by the loss of a Pd-bound H. This is quite plausible as the feed gas in the experiment contains a large amount of H2 (4.7%),12 and necessary for the formation of the final product. The adsorption of an additional H2 has a binding energy of −0.20 eV with the H–H bond length of 0.81 Å, signifying its relative stability. In Fig. 4, the energy profile of the second hydrogenation step is given starting with IS2. The attack of C2 of 2B1R* by the Pd-bound H leads to a small barrier of 0.35 eV. At the transition state (TS2), the H–Pd distance is 1.57 Å while the H–C2 distance is 1.59 Å.
Fig. 4 Energetics and geometries of stationary points along the reaction pathway for the second hydrogenation step of 1,3-butadiene to form 1-butene with a preadsorbed H2 on the Pd1/graphene SAC. The same color scheme as in Fig. 2 is used. |
The possible outcome of the second hydrogenation step presents an interesting situation. On one hand, the 1-butene product can stick to Pd, as shown in Fig. 4, with a strong mono-π-adsorption with the C3C4 moiety (adsorption energy of −1.72 eV). In Fig. S3,† the minimum energy path connecting the transition state (TS2) and adsorbed 1-butene (1B*) is shown and it is clear that it involves significant reorientation of the molecule. This energetically favored state is expected to undergo further hydrogenation to butane, thus inconsistent with the experimental observation. On the other hand, the 1-butene product can desorb, leading to a product state with an energy of −0.65 eV, as shown in the same figure. If energy were the only determining factor, the former would dominate, but this would be inconsistent with the experimentally observed high selectivity toward 1-butene, as the subsequent hydrogenation of the C3C4 double bond would be readily catalyzed by the same Pd SAC.
Fig. 5 AIMD post-transition state simulation of product formation. (a and b) Initial and final snapshots of AIMD trajectory in both top and side views, respectively. The same color scheme as in Fig. 2 is used. (c) Time evolution of the distance between the center-of-mass of carbon atoms in 13BD and the Pd atom. The insets depict the potential energy of the entire system and kinetic energy of 1-butene, respectively. |
The desorption of 1-butene is apparently driven by the repulsion between the incipient 1-butene and Pd SAC following the hydrogenation. Recall that a saturated carbon is significantly farther from Pd (∼2.52 Å in the butane–Pd system) than that before hydrogenation (2.09 Å in IM1), so the hydrogenation places the incipient 1-butene in a repulsive part of the PES, which pushes it to desorption. This is reflected in the insets of Fig. 5c where the potential energy of the entire system and kinetic energy of 1-butene are plotted as a function of time. The post-transition-state repulsive interaction results in a rapid decrease of the potential energy of the system and concomitant increase of kinetic energy of 1-butene in the first 100 fs, some of which is subsequently used to overcome the adsorption potential during desorption. The kinetic energy forces the system to avoid the minimum energy path defined by the IRC, which eventually leads to the adsorption of 1-butene.
These AIMD calculations clearly demonstrated that the post-transition-state dynamics drives the system to the desorption of the desired product (namely the 1-butene), without accessing the energetically preferred state of adsorbed 1-butene, which can be further hydrogenated to butane. This non-IRC mechanism, which has recently been found to operate in many organic25–30 and enzymatic reactions,31 explains the experimentally observed high selectivity in this SAC-catalyzed reaction. Interestingly, this mechanism for selectivity is fundamentally different from that on Pt(111) and Pd(111), where the different adsorption energies of 1,3-butadiene and 1-butene in combination with different stabilization energies for key radical intermediates are responsible for the selective production of 1-butene.14 There, no dynamics is needed to rationalize the selectivity.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/c8sc00776d |
This journal is © The Royal Society of Chemistry 2018 |