A.
Toral-Lopez†
*a,
E. G.
Marin
ab,
J. M.
Gonzalez-Medina†
a,
F. J.
Romero†
a,
F. G.
Ruiz†
a,
D. P.
Morales
a,
N.
Rodriguez†
a and
A.
Godoy†
*a
aDpto. Electrónica, Fac. Ciencias, Universidad de Granada, 18071, Spain. E-mail: agodoy@ugr.es; atoral@ugr.es
bDipartimento di Ingegneria dell'Informazione, Università di Pisa, 56122 Pisa, Italy
First published on 30th November 2018
BioFETs based on two-dimensional materials (2DMs) offer a unique opportunity to enhance, at a low cost, the sensitivity of current biosensors enabling the design of compact devices compatible with standard CMOS technology. The unique combination of large exposed surface areas and minimal thicknesses of 2DMs is an outstanding feature for these devices, and the assessment of their behaviour requires combined experimental and theoretical efforts. In this work we present a 2D-material based BioFET simulator including complex electrolyte reactions and analysing different models for the electrolyte–molecule interaction. These models describe how the molecular charge is screened by the electrolyte ions when their distributions are modified. The electrolyte simulation is validated against experimental results as well as against the analytical predictions of the Debye–Hückel approximation. The role of the electrolyte charge screening as well as the impact of the interaction model on the device responsivity are analysed in detail. The results are discussed in order to conclude about the consequences of employing different interaction approximations for the simulation of BioFETs and more generally on the correct modelling of biomolecule-device interaction in BioFETs.
Although the origin of BioFETs dates back to the 70's and 80's,4–7 it is in the last decade when they have come into the spotlight thanks to the auspicious progress made with new structures and materials. In particular, nanowire-based BioFETs have been demonstrated to notably boost the sensitivity of previous devices.1,8 However, their integration with planar technology is challenging and the shift to the industrial arena is predicted to be limited. This gap is expected to be filled by graphene9 and the two-dimensional (2D) material family (including transition metal dichalcogenides,10 group IV,11,12 group V,13,14etc.), which promises high sensitivity, integration with standard technology and easier surface functionalization.3,15–17 Indeed, several 2D material-based BioFETs have already been successfully fabricated2,3,16–19 and their operating principles are subject of intense research.20–26 This growing interest in the design of new and highly sensitive biosensors based on 2D materials is driven by a myriad of practical applications with an expected huge impact from a technological and economical point of view.
2D BioFETs can be classified into two categories according to the device-target interface:27 electrolyte–insulator–semiconductor (EIS) and electrolyte–semiconductor (ES). In the EIS BioFETs, an insulator layer, placed between the electrolyte and the semiconductor, is functionalized (usually via silanization). The objective of this process is to attach receptor agents (e.g. antibody-(TNF-alpha), PSA-mAb), able to capture the target molecules.2,3,17 This layer prevents possible reactions between the ions contained in the solution and the semiconductor surface, but it reduces the electrical coupling between the device and the molecules.27 In addition, most of the materials used as gate insulators have a hydrophilic nature that hinders the functionalization and reduces the efficiency of the bindings.16 In ES BioFETs, the insulator layer is removed leaving the semiconductor directly in contact with the electrolyte. In these devices, the semiconductor surface must be functionalized, although some biosensors without the functionalization layer have also been tested.16,28 These experiments have shown that the bare surface can be enough to trap the molecules, but not selectively, resulting in a weak modulation of the device response. Amongst 2D materials, MoS2, reduced graphene oxide (r-GO) and graphene show a hydrophobic behaviour and are good candidates to be employed in ES BioFETs.16,17,29,30 Indeed, the hydrophobic nature of these materials improves the quality of the molecular bindings16 and the absence of the insulator enhances the coupling between the target molecules and the semiconductor channel. ES BioFETs can be classified according to the measurement process, i.e. if the device surface is dried after the exposure to the analyte and before its electrical characterization (so-called dry environments), or if it is kept in contact with the sample during the measurement process (so-called wet environments). The former is a simpler alternative and has been demonstrated on a MoS2 channel driven by a back gate.16 Dry devices show some additional advantages: a simplified processing, the avoidance of molecule attaching/detaching events as a source of noise, and the availability of rapid measurement methods.31 However, they cannot be used for in vivo measurements where it is not easy to control, or to dry, the environment and have, therefore, limited application. In contrast, in wet devices the electrolyte is preserved.
In this work, we will focus on the structures where the electrolyte is present, and specifically on the modelling of the interaction between the electrolyte ions and the target molecules attached to the sensing interface. The BioFET simulation has been so far carried out using either commercial TCAD simulators,20–23 which are not purpose-designed to include the electrolyte effects, or ad hoc software.24–26 In particular, TCAD simulators make coarse approximations to model the effect of the electrolyte and biomolecules. First, the electrolyte is commonly modelled as a semiconductor with modified characteristics trying to fit its actual behaviour.22,23 Although the approach is useful for simple electrolytes, there are important limitations when multiple types of ions are present in the solution.22 Second, the biomolecules are usually modelled as a set of charged blocks immersed in the electrolyte close to the device surface (typically one block per attached molecule). This approach results in a set of blocks equally distributed along the device surface.20,21 Uncharged blocks are associated with unattached molecules resulting in unrealistic potential distributions in the electrolyte region, blocking the distribution of ions. The modelling of the semiconductor is, in contrast, performed in detail as it corresponds to the specific purpose of those software packages.
In ad hoc simulators, differently, specific equations governing the electrolyte are used. Therefore, a more realistic description of the device can be carried out incorporating in the model: (i) non-linear effects (e.g. surface ion adsorption making use of the site-binding model5,32) and (ii) the specific characteristics of the molecules such as their orientation with respect to the device surface or their dipole moment.24,26 In addition, complex electrolytes with multiple ion species can be simulated without coarse approximations. However, these numerical tools are oriented to specific structures, mainly nanowires25,26 and planar devices with bulk semiconductors,24 paying little attention to 2D materials, and the options to reconfigure the structure are very limited in comparison with TCADs. Despite the detailed study of the electrolyte, the modelling of the interaction with molecules attached to the device surface is frequently missed. Most of the studies describe the modelling of the electrolyte ionic charges but, they do not clarify how the molecular charges are implemented. This interaction between the target molecules and the electrolyte via charge screening remains elusive. It is a fundamental point to understand and reproduce the operation of BioFETs,1 and therefore deserves attention.
In this context, a comprehensive understanding of the working principles of 2D-material based BioFETs and the development of accurate models and simulators become mandatory to accelerate their development. Taking into consideration these principles and the aforementioned technical limitations of the present numerical models, we have developed a simulator which accurately integrates the modelling of both, the 2D semiconductor material and the biological region, which includes the electrolyte and the molecules. It is designed for planar structures which can be easily modified considering different materials for the semiconductor channel and for the layers above and below it. Multiple ion species and their concentration in the solution can be simultaneously included to define the electrolyte composition and the molecule–electrolyte interaction is implemented in distinct manners.
The rest of the paper is organised as follows. First, Section 2 describes the main characteristics of the simulator. The models used for each component of the device are introduced, including those of the electrolyte–biomolecule interaction that will be compared later. In Section 3, the simulation conditions and results are presented. First, a validation of the electrostatic model of the electrolyte is performed, and then the interaction models will be used to compare the impact on the device response. Finally, Section 4 draws the main conclusions.
Two main regions can be distinguished in the structure: the semiconductor region and the biological region, and the latter includes the electrolyte and the biomolecules. The potential distribution, V(x, y), in the whole structure is evaluated by means of the Poisson equation:
∇(ε∇V) = −(ρsemic + ρbio) | (1) |
The charge in the semiconductor is evaluated using the Schrödinger equation for thin channels or a 2D Density of States (DoS) under the EMA (Effective Mass Approximation) for 2D materials. In particular, when the Schrödinger equation is considered, it is solved under equilibrium conditions. Next, out of equilibrium, the calculated energy levels are rigidly shifted with the channel potential to determine the charge distribution from the corresponding wavefunctions. This approach, although approximate, is computationally very efficient as compared to the full-blown self-consistent solution. The charge density profile from the source to the drain is obtained from the 1D continuity equation:
(2) |
ρsemic(x,y) = φL(y)·nL(x) | (3) |
The electrolyte charge comprises the ion and the molecule charge densities. The ion charge density is given by where NAvg is the Avogadro constant and ci is the i-th ion concentration calculated using a modified Boltzmann equation:22
(4) |
Eqn (4) is used to model regular ions concentrations in the electrolyte. However, it is very common that the electrolyte contains a Phosphate-Buffer Saline (PBS) solution, to stabilize the pH, that must be described differently. The PBS comprises simple salts, the ions of which are modelled by using eqn (4), and compounds that perform the main part of this pH regulation. The concentration of the ions associated with these compounds has an additional component that is defined by a set of chemical reactions. These reactions take place in the solution to modify the local pH concentration (pH = −log10([H+])).33 The PBS considered in this case is based on NaH3PO4, so the reactions involved are the following:
(5) |
Unlike the ions, the charge and position of the trapped biomolecules are assumed to be fixed. For the sake of simplicity we assume a uniform distribution of molecules in the channel, although an arbitrary distribution could be easily implemented. As depicted in Fig. 1, each molecule is translated into a box of size LM × hM over the channel characterized by a constant charge density ρM, where LM and hM are the length and height of the molecule box, respectively. The number of boxes is defined as NM and the distance between boxes, dM, is modified to distribute them uniformly along the channel. So that, the total number of molecules in the channel can be written as: NM = LCh/(LM + dM). The total charge density in the electrolyte due to the biomolecules can be written as:
(6) |
As aforementioned (see Fig. 1), each biomolecule is modelled in two sections, a neutral part, which is the one adhered to the device interface, and a charged region which interacts with the ions in the electrolyte. Based on the different approaches of ref. 34–36, we have considered three descriptions of how these regions constrain the ion distribution so as to assess the differences between them (see Fig. 2):
1. Model 1: “Hollow boxes”. Ions are allowed to penetrate in the molecular regions.
2. Model 2: “Partially solid boxes”. Ions are allowed to enter the neutral region of the molecule but not the charged region.
3. Model 3: “Solid boxes”. The molecular regions behave as solid boxes, preventing any ion access.
The differences between these models and their impact on the modelling of a 2D BioFET will be discussed in detail in the next section.
ϕ(x) = ϕ0e−x/λD | (7) |
(8) |
Fig. 3 shows the potential profiles obtained for each electrolyte concentration for different oxide contact potentials and the three concentrations: 0.01 × PBS (a), 0.1 × PBS (b) and 1 × PBS (c). Each of these profiles is compared with eqn (7), where ϕ0 is set according to the calculated oxide–electrolyte interface potential and λD is analytically calculated using eqn (8) for each electrolyte composition. The simulated potential profiles match the exponential approximation for all the cases validating the complex electrolyte modelling.
The potential profile self-consistently determines the ion concentration in the electrolyte. In order to illustrate its distribution, Fig. 4 shows the concentration profiles as a function of the position for 0.1 × PBS and an oxide contact potential of 10 mV. The ion concentration derived from NaH3PO4, that depends on the pH, reveals a strong change in the concentration (Fig. 4 bottom right) demonstrating that a proper electrostatic modelling of the electrolyte should not neglect these complex reactions.
The simulation was handled under two situations of the oxide–semiconductor interface: pristine interface (no traps) and non-ideal interface. The interface traps included in the latter case are donor-kind, described by a constant density of states with a value of 5 × 1010 eV cm−2 at the SiO2–MoS2 interface, and 5 × 1012 eV cm−2 at the HfO2–MoS2 interface, with Gaussian distributions extending 2 nm inside the insulators. Fig. 5 shows the experimental curve and the simulation results.3 In order to achieve a deeper insight of the impact of the electrolyte modelling we have also simulated a device where the electrolyte is void of ions (dashed lines). The trend of these curves is clearly very different from the experimental results. However, when the electrolyte ions are included in the simulations the agreement with the experiment is considerably improved and the match is, indeed, excellent when the effect of interface traps is simulated. The excellent fitting with the experimental data indicates that the electrolyte–semiconductor device, including the coupling between the two regions of the device, and the non-idealities at the interfaces are correctly modelled. The impact of the traps on the BioFET performance is the result of the complex reciprocal relationships between the electrolyte ions, PBS, and semiconductor charges, which makes the overall behaviour not easy to predict. For example, in Fig. 5, when ions are considered, the presence of the traps tends to increase the output current, as a consequence of some balanced screening effect between the ions and the trap. Indeed, this behaviour might be affected by many trap parameters such as their polarity, position, energetic and spatial profiles, density, etc.; and therefore its comprehensive study would require a deep and dedicated analysis.
Fig. 5 Comparison between the data measured by Sarkar et al.3 (solid blue) and the results of the BioFET simulations, with ions (solid) and without ions (dashed). Markers indicate whether interface traps are considered in the simulations (squares) or not (circles). |
Parameter | Value |
---|---|
L M | 2 nm |
d M | 8 nm |
h M | 2 nm |
h C | 6 nm |
Q M | 2q |
First, the same structure of Fig. 3 is simulated, but one molecule is added at a distance hN from the oxide and centred in the longitudinal direction. Fig. 6 shows the total ion charge density distribution when the three interaction models are used, for the 0.1 × PBS concentration case. The influence of each molecule model on the ion distribution is clearly observable. The impact of the different PBS concentrations is shown in Fig. 7, where the longitudinal charge density profiles at y = 6 nm are depicted for the different PBS concentrations. Far away from the molecular charge, the ionic charge density is roughly the same independently of the interaction model used. Near the molecular charge, nevertheless, large differences in ρelec arise. Model 1 (hollow box) presents the maximum of the ion concentration at the molecule centre while in Models 2 and 3 the ions are prevented from entering into the molecular region.
Fig. 7 Longitudinal charge density profiles at y = 6 nm. The cases depicted correspond to the three interaction models when the PBS concentration is modified: 0.01 × PBS, 0.1 × PBS and 1 × PBS. |
The sensitivity of a BioFET device is determined by its capability to reproduce the molecule charges in the channel. That depends, of course, on the PBS concentration, and to what extent the molecule charge is screened by the electrolyte. In order to understand the differences between the molecular models in this regard, Fig. 8 shows the oxide contact charge (Qcont) and the electrolyte charge (Qelec) normalized to the molecular charge (QM) in the structure. Since the molecular charge is positive the changes of Qcont from negative to positive indicate that QM is completely screened and the contact associated charge only depends on Qelec.
The relation Q/QMvs. Vcont always follows a linear trend, and the values obtained using the different models become closer as the PBS concentration is increased. For a given PBS concentration, Models 1 and 3 define the extreme values of Q/QM and Model 2 provides intermediate results that approach those of Model 1 or Model 3 depending on the PBS concentration. Thus, for low PBS concentrations, the screening is expected to be weak and the values of Model 2 are closer to those of Model 3 (solid box), while for high PBS concentrations, where a high screening takes place, Model 2 results approach the results of Model 1 (hollow boxes). This adaptability of Model 2 can be explained according to the relative role of the neutral and charged regions of the molecule under different screening conditions. In a high screening situation, the contact charge is mainly determined by the charge of the ions between the oxide interface and the molecule charged region. This neutral region is modelled in the same way in Models 1 and 2, and therefore the results obtained in both models are similar. In the weak screening case the charged region of the molecule gains relevance and Model 2 is similar to Model 3.
• First case: hN = 4 nm. The distance from the device surface to the molecular charge is lower than the Debye screening length (7.633 nm).
• Second case: hN = 20 nm. The distance from the device surface to the charged region of the molecule is higher than the Debye screening length.
In both cases the IDS − VGS response of the device is compared to the case when no molecules are attached to the device surface, IDS0. The change in the transfer characteristics is calculated as Γ = (IDS0 − IDS)/IDS0. The results of the simulations using hN = 4 nm and hN = 20 nm are depicted in Fig. 9. The most noticeable difference is observed for Model 3, where, independently of the sign of the molecule charge, the IDS response tends to be lower than the reference IDS0. This is not the case for Models 1 and 2, where the change in the sign of QM makes the output current higher or lower than IDS0. This makes sense as a negative molecule charge acts as a negative gate voltage reducing the charge density in the channel and, as a consequence, lowering the output current. The same argument can be applied to a positive QM, which acts as a positive gate voltage. In addition, the increase in hN is expected to reduce Γ to a great extent, as hN > λD.35 However, this is not the case for Model 3; in this case, Γ does not show such noticeable reduction when hN is increased from 4 nm to 20 nm, and it is even greater in the case QM > 0.
Focusing on Models 1 and 2, Γ is symmetric, in the case of hN = 20 nm, to changes the sign of QM. In contrast for hN = 4 nm certain asymmetries are observed. The explanation of this behaviour comes from the differences in the modelling of the molecular charge. In the strong screening case, hN = 20 nm, the molecular charge does not have a main role in the modulation of the semiconductor charge. Then, the differences between Models 1 and 2 are translated into an increase of the magnitude of Γ. When hM is reduced to 4 nm, there is a weaker screening situation and the effect of these differences is translated into the asymmetries observed.
Footnote |
† Pervasive Electronics Advanced Research Laboratory. |
This journal is © The Royal Society of Chemistry 2019 |