Leland B.
Gee‡
a,
Vladimir
Pelmenschikov‡
*b,
Hongxin
Wang‡
c,
Nakul
Mishra
d,
Yu-Chiao
Liu
ef,
Yoshitaka
Yoda
g,
Kenji
Tamasaku
h,
Ming-Hsi
Chiang
*ef and
Stephen P.
Cramer
*c
aDepartment of Chemistry, Stanford University, 333 Campus Drive, Stanford, CA 94305, USA
bInstitut für Chemie, Technische Universität Berlin, Strasse des 17 Juni 135, 10623 Berlin, Germany. E-mail: pelmentschikov@tu-berlin.de
cSETI Institute, 189 Bernardo Avenue, Mountain View, CA 94043, USA. E-mail: scramer@seti.org
dDepartment of Chemistry, University of California, Davis, One Shields Ave, Davis, CA 95616, USA
eInstitute of Chemistry, Academia Sinica, Nankang, Taipei 115, Taiwan
fDepartment of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung 807, Taiwan
gJapan Synchrotron Radiation Research Institute (JASRI), SPring-8, 1-1-1 Kouto, Sayo-gun, Hyogo 679-5198, Japan
hRIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan
First published on 6th May 2020
A diiron complex containing a bridging hydride and a protonated terminal thiolate of the form [(μ,κ2-bdtH)(μ-PPh2)(μ-H)Fe2(CO)5]+ has been investigated through 57Fe nuclear resonance vibrational spectroscopy (NRVS) and interpreted using density functional theory (DFT) calculations. We report the Fe–μH–Fe wagging mode, and indications for Fe–μD stretching vibrations in the D-isotopologue, observed by 57Fe-NRVS. Our combined approach demonstrates an asymmetric sharing of the hydride between the two iron sites that yields two nondegenerate Fe–μH/D stretching vibrations. The studied complex provides an important model relevant to biological hydrogen catalysis intermediates. The complex mimics proposals for the binuclear metal sites in [FeFe] and [NiFe] hydrogenases. It is also an appealing prototype for the ‘Janus intermediate’ of nitrogenase, which has been proposed to contain two bridging Fe–H–Fe hydrides and two protonated sulfurs at the FeMo-cofactor. The significance of observing indirect effects of the bridging hydride, as well as obstacles in its direct observation, is discussed in the context of biological hydrogen intermediates.
These special –SH/M–H− interactions take various forms. In [FeFe] hydrogenases there is a conserved cysteine situated at the end of a proton transfer chain formed by hydrophilic amino acid residues and water molecules, with the –SH thiol group adjacent to an azadithiolate (ADT) bridge of the [2Fe]H sub-cluster (Fig. 1c). There is considerable evidence that the ADT bridge plays a critical role in proton acceptance and relay to the catalytic Fed site.17 Moreover, disruption of the proton supply chain in the enzymes from Chlamydomonas reinhardtii (CrHydA1) or Desulfovibrio desulfuricans (DdHydAB) has allowed the transient Hhyd catalytic state to be trapped and unequivocally shown to involve a terminal Fed–H− hydride (Fig. 1c).14,18–21 For [NiFe] hydrogenases, the catalytic Ni–R state has been shown to feature a bridging hydride, with a Ni-bound protonated cysteine sulfur (Fig. 1b).6 Finally, in nitrogenases the E2 state is presumed to have one bridging Fe–H−–Fe hydride with a nearby protonated sulfur capable of H2 release, while two hydrides capable of reductive elimination have been proposed for the E4 or ‘Janus intermediate’ of the Fe(Mo,V,Fe)-cofactor (Fig. 1d).9
To model the aforementioned biological hydrides, previous efforts produced and characterized synthetic protonated thiols coordinated to diiron centers.22–25 Here we extend this work by exploring 57Fe-specific vibrational dynamics for a diiron center with a bridging hydride and a protonated thiol ligand. Specifically, we have characterized the [(μ,κ2-bdtH)(μ-PPh2)(μ-H)Fe2(CO)5]+ (bdt = 1,2-benzenedithiolate) model compound, referred hereafter as ‘μHSH’ (Fig. 1a), and as well its deuterated isotopologue [(μ,κ2-bdtD)(μ-PPh2)(μ-D)Fe2(CO)5]+, μDSD, using nuclear resonance vibrational spectroscopy (NRVS). We also recorded the spectrum of the S-methylated complex: [(μ,κ2-bdtCH3)(μ-PPh2)(μ-H)Fe2(CO)5]+, here referred to as ‘μHSMe’.
57Fe-NRVS is a synchrotron-based technique that observes excitation of an 57Fe nucleus together with the excitation/deexcitation of vibrational modes.26–28 NRVS is essentially the recoil fraction that steals intensity from the recoil-free Mössbauer effect, with the measured intensity for a given normal mode proportional to the 57Fe kinetic energy in that mode, ultimately yielding an 57Fe partial vibrational density of states (PVDOS). The experimental frequencies and intensities can be directly compared with normal mode calculations from density functional theory (DFT) or even empirical force fields.
The asymmetric diferrous compound μHSH is relevant to the protonated and bridging hydride-bound states proposed for H2 production in [NiFe] hydrogenases and to the nitrogenase E2 and E4 intermediates. It is also a good benchmark for comparison with the NRVS for intermediates in [FeFe] hydrogenase proposed to contain a μ-hydride ligand bridging the Fep(II) and Fed(II) sites (Fig. S1†).29 In line with a recent interpretation that [FeFe] hydrogenase operates exclusively with bridging CO intermediates,30 the μ-hydride intermediates were attributed to the enzyme's ‘slow cycle’.
At higher energies, a band at 745 cm−1 is particularly significant – it represents an Fe–H–Fe wagging mode. This assignment is based on comparison with results for similar Fe–μH−–Fe synthetic complexes and their computational models,31,32 as well as Ni–μH−–Fe models and the Ni–R state of [NiFe] hydrogenase.11 The significant weakening at this position in the μDSD spectrum supports this assignment; residual intensity likely results from an incomplete H-to-D exchange. Below the 745 cm−1 band is a second candidate wagging mode feature at ∼701 cm−1. Although this energy region coincides with benzene-dithiol modes, their Fe motion is predicted to be low. The energy is also consistent with the predicted hydride wagging motion of a deprotonated species, μHS−, based on DFT calculations as described below. For the μHSMe complex, a slight downshift to 733 cm−1 is observed for the main wagging mode feature.
From previous NRVS work on Fe–H/D− complexes,11,31,32 as well as guidance from the conventional vibrational spectroscopy literature,33 we expect observation of the Fe–H stretching modes at vibrational energies above 1100 cm−1. There are hints of such features at 1165 cm−1 and 1403 cm−1, but the signal-to-noise is not convincing. Even in the best of cases, these modes are extremely weak in NRVS because they primarily involve the hydride nucleus motion with an almost static Fe partner. Below, we will use DFT calculations to investigate additional factors such as sample heterogeneity and intermolecular coupling that conspire to split the already weak Fe–H stretches into a multitude of even weaker modes that are below the current detection limit.
Fig. 3 DFT-based 57Fe-PVDOS for different chemical models and their isomers. Left (a): μHSH or μDSD. Right, top to bottom: (b) μHS− or μDS−, (c) μHSMein or μDSMein, (d) [μHSH]2 or [μDSD]2, (e) μHSHinvs.μHSH (= μHSHout) or μDSDinvs.μDSD (= μDSDout). The high energy region >650 cm−1 (b–e) is multiplied by 2 for visibility. In (a), the intensities <210 cm−1 are based on the [μHSH]2 or [μDSD]2 dimer calculations, as explained in the main text and shown in Fig. 5. |
To better understand the differences in these two spectra, we calculated the PVDOS for the bridging H and D nuclei, as shown in Fig. 4 and S7d.† Inspection of these curves reveals three distinct hydride bands, whereas there are only two distinct deuteride bands above 650 cm−1. The intensity for the third deuteride band (corresponding to the wagging motion) is redistributed throughout the 400–600 cm−1 region, indicating significant coupling in the motions of the D nucleus with the five CO ligands. A comparison of the single wagging mode in μHSH with three prominent μDSD modes involving coupled motions is also depicted in Fig. S5.†
The computed spectrum of μDSD sees shifts of the Fe–H stretching modes at 1424/1196 cm−1 to respectively 1015/855 cm−1. The 57Fe-PVDOS intensities of the Fe–D (vs. Fe–H) bands are enhanced due to the amplified 57Fe displacements when the heavier deuteride is the bridging ligand, which allows the Fe–D stretching signals to raise above the NRVS noise level (Fig. S11 and S12†). For future NRVS observation of such stretching modes, Fe–D complexes are clearly favored over Fe–H isotopologues.
The deduction that the Fed site contributes more NRVS intensity than the Fep site in the wagging and stretching hydride modes is supported by the differing Fe–H bond lengths revealed in the DFT-optimized geometry of μHSH, Fep–H = 1.73 Å vs. Fed–H = 1.65 Å; comparable values and their variations are seen as well in the X-ray structure34 (Table S1†). The ∼0.1 Å difference in the Fep/d–H bond lengths as well rationalizes the ∼230 and splittings in the predicted Fep/d–μH and Fep/d–μD stretching frequencies.
An even higher degree of hydride sharing asymmetry is calculated for the μHS−/μDS− model (Table S1†) and, consequently, larger energy splittings between the predicted bands for the Fep/d–μH/D stretches (Fig. 3b and S8b†). Specifically, the Fep–μH/D stretches calculated respectively at 818/1138 cm−1 are significantly red-shifted when compared to the best-fit μHSH/μDSD model, due to a stronger Fep–Sp bond strength which in turn leads to a weaker adjacent Fep–μH− bonding. Notably, the deprotonation of μHSH to μHS− leads to a predicted upshift by 15 cm−1 (332 to 347 cm−1, Fig. S8b†) for the band observed at 330 cm−1 and having the strongest Fep–Sp stretching character (see ESI† for these modes animated). Finally, to produce a more realistic simulation of the observed NRVS spectrum, in Fig. 6 and S12† we provide an average of the three DFT models considered above.
The vibrational calculation on [μHSH]2 shows an increased density of normal modes and significant improvement in the low-energy <200 cm−1 region of the predicted NRVS spectrum over that of the μHSH monomer only (Fig. 5 and S10†). Of note is reproduction of the broad experimental feature centered at 35 cm−1 produced by highly-delocalized expansions of the dimer, see Fig. 5 and ESI† for the representative normal mode at 38 cm−1 animated. The intermolecular dispersion interaction plays an important role here, included as a correction to our DFT setup on [μHSH]2 (see ESI Methods†). The dimer computational model does not capture all of the features in the low-energy region – specifically the prominence at ∼70 cm−1 – which may be reproduced by models accounting for more molecules and/or their structural periodicity, however such a computational effort is beyond the scope of this work.
Fig. 5 (A) The normal mode calculated at 38 cm−1 showing relative displacements of the two enantiomers comprising the [μHSH]2 dimer. Actual amplitude of this [μHSH]–[μHSH]m vibration is ∼0.05 Å. (B) Low-frequency (<350 cm−1) 57Fe-PVDOS spectra for the μHSH compound from NRVS experiment (blue) and DFT calculations using [μHSH]2 dimer (black) and μHSH monomer (orange) models; for the full-range spectra, see Fig. S10.† |
Notably, the dimer is composed of μHSH and its mirror-image isomer μHSHm, or the enantiomer, yet the [μHSH]2 structure itself does not exhibit a symmetry (higher than C1). Deviation from the exact mirror-image symmetry between μHSH and μHSHm effectively splits the Fe–μH/D stretching normal modes >800 cm−1, which are particularly sensitive to even minimal Fe–μH bond length changes of ∼0.01 Å (Table S1†), in line with the hydride mode variations indicated above for the monomer models. This results in a more faithful simulation of their low PVDOS intensities – see the calculated [μHSH]2/[μDSD]2vs.μHSH/μDSD spectra compared to the observed H/D sample NRVS data in Fig. 6, S10, and S12.†
The DFT calculations reveal that Fe–H stretching modes are even more sensitive to variability at the Fe–S ligand than the Fe–H–Fe wag modes. In contrast to the well-defined wag mode, current S/N limitations unfortunately prevented unambiguous experimental assignments of the stretching modes. The predicted position of the lower frequency Fep–H stretch mode is especially sensitive to the chemistry at the sulfur ligand adjacent to Fep, varying by almost 70 cm−1 in the range of the considered alternatives (S−: 1138 cm−1, SHout: 1195 cm−1, SMein: 1204 cm−1, SHin: 1206 cm−1).
Another result from the DFT calculations is the inequitable sharing of the bridging hydride. This is most directly seen in the optimized ∼0.1 Å Fe–H distance differences. Similar differences have been predicted by DFT previously in the bimetallic cofactors of [FeFe] and [NiFe] hydrogenases and their models.11,20,32 The difference in Fep/d–μH bonding is also reflected in the prediction of two distinct Fe–H stretching modes split by as much as 322 cm−1. Even greater asymmetry was observed in a Ni–μH–Fe model complex, where Ni–H and Fe–H stretches were seen respectively at 954 cm−1 and 1468/1532 cm−1, the latter split by 64 cm−1 due to a conformational heterogeneity in the μ-pdt ligand.11 It is noteworthy that the asymmetry is modulated by the status of the iron-bound sulfur – a larger asymmetry occurs when the sulfur is deprotonated.
The model studies have relevance to proposed [FeFe] hydrogenase intermediates. A terminal hydride state Hhyd has been convincingly assigned using NRVS.18–20,29 However, bridging hydride species have also been proposed for intermediates named H(s)red using other methods,29,37 and a recent report has investigated the Hred state using a combination of 57Fe-NRVS and other spectroscopies, supported by QM/MM calculations.29 It was proposed that the Hred state contains a bridging Fep–μH−–Fed hydride with its wag distributed among the ∼600–650 cm−1 (Fe–)CO/CN−/ADT motions, thus prohibiting its direct observation.
Our experimental results on model compounds found wagging modes at higher frequencies, ranging from 694–702 cm−1 in a sterically congested diiron hydride32 to 733–745 cm−1 for the current samples to 758 cm−1 in a Ni–μH–Fe model complex.11 Of course, structural differences can conspire to move wagging modes to lower frequencies – in a recent study of a complex with an Fe(μ-H)2Fe core the wagging modes were identified at 455 and 587 cm−1, mostly screened by other NRVS bands.38 For future work with improved S/N, observation of Fe–D and Fe–H stretching modes would be a more rigorous way to test various structural hypotheses.
Fe–H and Fe–D stretching modes were also scrutinized by DFT modeling for the isomeric μHSHin/out and deprotonated μHS− forms of μHSH, as well as a [μHSH]2 dimer relevant to the polycrystalline NRVS sample. These modes exhibit larger frequency and intensity shifts, making them an even more delicate probe of iron-hydride bonding. Their routine application awaits improvements in sample preparation, beamline flux, monochromators, and detectors.
Footnotes |
† Electronic supplementary information (ESI) available: Materials and methods, Fig. S1–S12, Table S1, atomic Cartesian coordinates, animated vibrational modes. See DOI: 10.1039/d0sc01290d |
‡ These authors contributed equally. |
This journal is © The Royal Society of Chemistry 2020 |