Md. Helal Miaha,
Md. Rakib Hossain*a,
Md. Saiful Islama,
Tahmina Ferdousb and
Farid Ahmedb
aDepartment of Physics, Bangabandhu Sheikh Mujibur Rahman Science and Technology University, Gopalganj-8100, Bangladesh. E-mail: rakibphy_r@bsmrstu.edu.bd
bDepartment of Physics, Jahangirnagar University, Savar, Dhaka-1342, Bangladesh
First published on 30th November 2021
The application of low-dimensional nanomaterials in clinical practice as efficient sensors has been increasing day by day due to progress in the field of nanoscience. In this research work, we have conducted a theoretical investigation to nominate a potential electrochemical sensor for the allopurinol (APN) drug molecule via studying the fundamental interactions of the drug molecule with two nanocages (carbon nanocage/CNC – C24 and boron nitride nanocage/BNNC – B12N12) and two nanosheets (graphene – C54H18 and boron nitride – B27N27H18) by means of the DFT B3LYP/6-31G(d,p) level of theory in both gas and water phases. The adsorption energies of APN–BNNC conjugated structures are in the range of −20.90 kcal mol−1 to −22.33 kcal mol−1, which indicates that weak chemisorption has occurred. This type of interaction happened due to charge transfer from the APN molecule to BNNC, which was validated and characterized based on the quantum theory of atoms in molecules, natural bond analysis, and reduced density gradient analysis. The highest decreases in energy gap (36.22% in gas and 26.79% in water) and maximum dipole moment (10.48 Debye in gas and 13.88 Debye in water) were perceived for the APN–BNNC conjugated structure, which was also verified via frontier molecular orbital (FMO) and MEP analysis. Also, the highest sensitivity (BNNC > BNNS > CNC > GNS) and favorable short recovery time (in the millisecond range) of BNNC can make it an efficient detector for the APN drug molecule.
Nanostructured materials are materials of nanoscale in size (generally 1–100 nm range) with zero-dimensional (nanocage), one-dimensional (nanotube), two-dimensional (nanosheet), or three-dimensional (diamond) structures. A tremendous appeal to nanomaterials by the scientific research community has been made after the synthetization of the two-dimensional carbon nanostructure named graphene by the group of K. S. Novoselov et al.20 Nanostructures are considered for nanoscale drug delivery and drug sensing tools due to their biocompatibility, low toxicity and low cost, as well as their intriguing electronic and mechanical properties.21–23 In past years, it has been revealed theoretically and experimentally that pure carbon-based nanostructures can be used as sensors towards various toxic gases and life-threatening drugs.24 For instance, P. Wu et al. fabricated an efficient glucose detector by providing a general approach for constructing a graphene-based bio-sensing platform through assembling enzymes/proteins on the graphene surface.25 Also, a number of experimental studies have been done by different research groups to sense metronidazole, doxorubicin, β-cyclodextrin etc. drugs by using graphitic carbon nitrides (g-C3N4) and they obtained very promising results to apply this technique clinically.26–28 Similarly, S. J. Rodríguez and E. A. Albanesi proposed a type of field-effect transistor device based on graphene for detecting amino acids with the help of DFT calculations in combination with the non-equilibrium Green's function in the OpenMX3.844 software package.29 In addition, M. Z. Tonel et al. conducted a theoretical study and they found physisorption interaction between a pristine graphene nanosheet and doxorubicin anticancer drug with 0.49 eV binding energy and also showed a decrease in the interaction with increasing temperature by means of DFT theory with the GGA-PBE functional in SIESTA code.30 Moreover, the C24 nanocage has been proposed as a sensing nanostructure towards anticancer drug Melphalan by performing DFT at the B3LYP/6-31G(d) level of theory by the research group of E. S. Mirkamali et al.31 Finally, E. O. Kweitsu's research group theoretically showed that pristine C60 is a suitable sensor for sensing phosgene gas by using DFT/LDA calculation in Quantum Espresso Software.32
With advances in nanoscience, researchers have set themselves to discover the properties of boron nitride (BN) nanostructures and the isoelectronic structure of carbon allotropes, for the purpose of applying them in diversified fields. It was first synthesized as a cubic form in 1957, as a tubular form in 1995, as a nanocage in 2004, and as a nanosheet in 2011.33–36 BN nanostructures have emerged as potential candidates in the field of sensing and transporting of drugs in targeting sites for their lucrative improved properties, including higher thermal and chemical stability, and wide bandgap compared to their famous counterpart carbon-based nanostructures.37,38 With the assistance of the DFT method, Md. Rakib Hossain's research group conducted a comparative theoretical investigation and showed that pristine and functionalized boron nitride nanostructures are potential substrates to interact with different drug molecules.39–42 S. D. Dabhi et al. proposed boron nitride nanoribbons as a biosensor to sense DNA and RNA nucleobases by using van der Waals corrected DFT/GGA theory.43 Different groups claimed that 6-tetragonal and 8-hexagonal ringed Th symmetric B12N12 nanocages are a more sensible choice and capable of drug delivery and sensing systems.24,44 K. Nejati et al. conducted a comparative study among BN nanostructures towards cathinone drug, and they concluded that the B12N12 nanocage is a more sensible electronic sensor than BNNT or BNNS by calculating −16.1 kcal mol−1 adsorption energy and a 46% decrease in the HOMO–LUMO gap by using the B3LYP-D/6-31G* method.45 A. Hosseinian's team proposed pristine B12N12 nanocages as an effective chemical sensor to detect the anticancer drug α-cyano-4-hydroxycinnamic acid because of their maximum adsorption energy of −23.7 kcal mol−1, high sensitivity (maximum 55.2% decrease in Eg) and short recovery time (22.7 s) with the help of density functional theory calculations.46
In order to find an effective, economical, and biosafe nano-sensor to detect the drug APN, we have conducted a comparative study by performing the quantum computational method DFT. The essential factors for the adsorption of APN drug on a graphene nanosheet (GNS – C54H18), carbon nanocage (CNC – C24), boron nitride nanosheet (BNNS – B27N27H18), and boron nitride nanocage (BNNC – B12N12) in both gas and solvent phases were investigated. To the best of our knowledge, there has been no theoretical study on the interaction of APN drug with the aforementioned adsorbents. Therefore, our aim is to identify a promising APN drug sensor by studying the geometric structure, and electronic and thermodynamic characteristics of the final conjugated structures (CSs).
System | d | DM | EAds (B3LYP) | EAds,CP (B3LYP) | EAds (wB97XD) | EAds,CP (wB97XD) | νmin | νmax | τ |
---|---|---|---|---|---|---|---|---|---|
APN | — | 3.63 | — | — | — | — | 158.61 | 3674.09 | — |
BNNC | — | 0 | — | — | — | — | 325.51 | 1447.64 | — |
CS1 | 1.55 | 8.72 | −26.27 | −21.00 | −31.61 | −27.30 | 19.26 | 3667.13 | 19.9 |
CS2 | 1.61 | 10.48 | −26.48 | −22.33 | −33.61 | −30.09 | 27.59 | 3602.47 | 26.8 |
CS3 | 1.63 | 4.93 | −25.20 | −20.90 | −33.82 | −30.13 | 23.75 | 3599.9 | 4.3 |
BNNS | — | 0 | — | — | — | — | 27.05 | 3626.62 | — |
CS4 | 2.23 | 3.43 | −9.99 | −6.48 | −14.62 | −11.57 | 9.02 | 3672.37 | 1.58 × 10−12 |
CS5 | 2.36 | 3.593 | −2.74 | −0.29 | −23.88 | −17.18 | 4.98 | 3628.82 | 5.01 × 10−17 |
CS6 | 2.40 | 2.81 | −3.69 | −0.48 | −23.64 | −16.93 | 6.08 | 3674.75 | 1.95 × 10−16 |
CNC | — | 0 | — | — | — | — | 375.67 | 1609.76 | — |
CS7 | 2.64 | 2.84 | −3.15 | −0.75 | −6.38 | −4.13 | 13.04 | 3673.9 | 9 × 10−17 |
CS8 | 2.75 | 3.05 | −2.17 | −0.55 | −5.62 | −3.86 | 11.4 | 3634.96 | 2.22 × 10−17 |
CS9 | 3.74 | 3.34 | −0.56 | 0.96 | −8.71 | −6.32 | 10.65 | 3674.02 | 2.23 × 10−18 |
GNS | — | 0 | — | — | — | — | 48.35 | 3199.86 | — |
CS10 | 2.54 | 3.74 | −5.31 | −2.80 | −9.85 | −7.69 | 8.31 | 3673.81 | 1.97 × 10−15 |
CS11 | 2.68 | 3.65 | −1.94 | −1.07 | −19.51 | −15.33 | −3.36 | 3676.37 | 1.6 × 10−17 |
CS12 | 2.68 | 3.58 | −3.45 | −1.82 | −7.60 | −6.16 | 8.27 | 3630.32 | 1.38 × 10−16 |
Systems | ΔH | ΔG | ΔS |
---|---|---|---|
CS1 | −25.42 | −12.54 | −0.043 |
CS2 | −25.00 | −12.39 | −0.042 |
CS3 | −23.71 | −10.76 | −0.043 |
CS4 | −8.34 | 1.41 | −0.033 |
CS5 | −1.50 | 6.12 | −0.026 |
CS6 | −2.42 | 5.65 | −0.027 |
CS7 | −1.91 | 6.65 | −0.029 |
CS8 | −0.90 | 7.12 | −0.027 |
CS9 | 0.64 | 7.70 | −0.024 |
CS10 | −3.27 | 3.88 | −0.024 |
CS11 | −0.76 | 6.26 | −0.024 |
CS12 | −1.49 | 5.36 | −0.023 |
System | E(H) | E(L) | Eg | % ΔEg | E(F) |
---|---|---|---|---|---|
APN | −6.53 | −1.10 | 5.43 | −3.82 | |
BNNC | −7.71 | −0.87 | 6.84 | −4.29 | |
CS1 | −6.74 | −2.27 | 4.47 | 34.66 | −4.50 |
CS2 | −6.76 | −2.39 | 4.36 | 36.22 | −4.58 |
CS3 | −7.00 | −2.47 | 4.52 | 33.91 | −4.74 |
BNNS | −6.53 | −0.04 | 6.49 | −3.29 | |
CS4 | −6.53 | −1.31 | 5.22 | 19.49 | −3.92 |
CS5 | −6.39 | −0.96 | 5.42 | 16.37 | −3.68 |
CS6 | −6.39 | −0.95 | 5.44 | 16.09 | −3.67 |
CNC | −5.87 | −3.35 | 2.52 | −4.61 | |
CS7 | −5.84 | −3.38 | 2.46 | 2.25 | −4.61 |
CS8 | −5.86 | −3.39 | 2.48 | 1.66 | −4.63 |
CS9 | −5.85 | −3.34 | 2.51 | 0.23 | −4.59 |
GNS | −4.94 | −2.12 | 2.82 | −3.53 | |
CS10 | −5.01 | −2.20 | 2.81 | 0.41 | −3.61 |
CS11 | −5.06 | −2.25 | 2.82 | 0.15 | −3.66 |
CS12 | −4.97 | −2.16 | 2.81 | 0.29 | −3.56 |
We have tabulated a comparative study of our DFT calculations of the APN molecule for the fifteen bond lengths and twenty-three bond angles with two other theoretical studies in Table S1.† We know that a higher negative cohesive energy means that the structure attains energetically higher stability. To predict the energetic stability of the APN structure, we have calculated the cohesive energy of the drug molecule and found it to be −6.66 eV per atom, which means that the APN drug molecule is energetically stable. To estimate the cohesive energy of the APN drug molecule and studied adsorbents, we used following formula:52
(1) |
We have also observed that the IR frequency of APN ranges from 158.61 cm−1 to 3674.09 cm−1. The electronic properties, including HOMO, LUMO, and dipole moment of the APN drug molecule were explored and are tabulated in Tables 1 and 3. A 3.63 Debye dipole moment was recorded for the APN drug molecule, which is in excellent agreement with the 3.65 Debye of M. E. Costas et al.53 The APN molecule has an intrinsic dipole moment, which means the asymmetric charge distribution occurs throughout the whole molecule. This has also been observed from MEP (Fig. 1) where electronic charge-rich regions are mainly on O1, N5, and N4 atoms, which act as electrophilic sites and electronic charge-deficient regions are at N2, N3, and C10 atoms which are considered nucleophilic sites. The HOMO level is from the electron-rich portion, while the LUMO level signifies the electron-deficient portion of the nanostructures. The HOMO and LUMO values are −6.53 eV and −1.10 eV, respectively, where the Fermi level is specified at −3.82 eV.
We have done a comparative study to find a suitable adsorbent for the APN drug molecule, and chosen two nanocages (CNC and BNNC) and two nanosheets (hydrogenated GNS and hydrogenated BNNS). The Th symmetric BNNC was chosen as the APN molecule's adsorbent, which has six tetragonal rings (TR) and eight hexagonal rings (HR).37 There are 36 B–N bonds in BNNC where the bond lengths for the TR and HR rings are found to be 1.49 Å and 1.44 Å, respectively, which are completely consistent with various theoretical and experimental results.44,54,55 The cohesive energy of BNNC was also calculated by means of eqn (1) and found to be −7.42 eV per atom, which is consistent with a previous study.56 In order to confirm the natural existence of BNNC, the vibrational frequency was also studied and recorded from 325.51 cm−1 to 1447.64 cm−1. The dipole moment of BNNC is zero, which means the charges are uniformly distributed over the structure. The boron atom acts as a cation by possessing +0.44 |e| electronic charges, and the nitrogen atom acts as an anion by occupying −0.44 |e| electronic charges, which implies that each B–N bond is ionic in BNNC. From the MEP map shown in Fig. 1, it was also confirmed that the symmetric charge distribution occurred throughout the entire structure. The HOMO and LUMO energy values were calculated as −7.71 eV and −0.87 eV, respectively, and the bandgap was found to be 6.84 eV, which are in good agreement with other studies.44,57,58 From Fig. 1, we noticed that the HOMO of BNNC is mainly situated on nitrogen atoms while the LUMO is present at boron atoms.
On the other hand, there are six tetragonal rings and eight hexagonal rings in the optimized CNC structure. In the 36 C–C bonds of the CNC structure, we found two types of bond length. One is 1.49 Å which is shared between the tetragonal ring and the hexagonal ring; the other is 1.38 Å which is shared between two adjacent hexagonal rings. The cohesive energy calculation, like those of the aforementioned studied adsorbents and adsorbate, was accomplished using eqn (1) and −8.14 eV cohesive energy was found for this structure, which is also consistent with previous reports.59 Its natural existence was confirmed by exploring the IR vibrational mode ranging from 375.67 cm−1 to 1609.76 cm−1. The dipole moment of CNC is zero, and there is no ionic charge on the atoms, which implies the C–C bonds are covalent bonds. The HOMO and LUMO energy values are identified as −5.87 eV and −3.35 eV, respectively, showing a band gap of 2.52 eV.
Our studied BNNS and GNS nanosheets as adsorbents comprise 19 hexagonal rings and 18 H atoms, and contain 90 atomic bonds. In the case of the BNNS structure, there are 9 B–H bonds (1.19 Å), 9 N–H bonds (1.01 Å) and 72 B–N bonds (1.42–1.46 Å). The B–N bond lengths in the central rings are about 1.45 Å, and variation in B–N bond length occurred in the peripheral rings due to the influence of hydrogen atoms, which is similar to previous studies.39,60 We also observed that the boron atoms and nitrogen atoms possessed positive and negative electronic charges, respectively, and along with the hydrogen atoms of the N–H and B–H bonds possessed positive and negative charges, respectively. Hence it can be said that all the bonds are ionic bonds. It should also be mentioned that some peripheral nitrogen atoms possessed more negative charge than central nitrogen atoms. On the other hand, a reverse scenario was observed for boron atoms. In GNS, there are 18 C–H and 72 C–C bonds where the bond length of each C–H bond is 1.09 Å and the C–C bond length varies from 1.36 Å to 1.44 Å, which are supported by previous research work.39 In order to know the energetic stability of the BNNS and GNS nanostructures, we have found the investigated cohesive energies to be −6.67 eV per atom and −7.58 eV per atom, respectively, which are consistent with the results of M. R. Hossain et al.39 Vibrational frequencies ranging from 27.05 cm−1 to 3626.62 cm−1 and from 48.35 cm−1 to 3199.86 cm−1 were observed for BNNS and GNS, respectively, which also proved their natural existence. The HOMO energy values for BNNS and GNS are calculated as −6.53 eV and −4.94 eV while the LUMO energy values are −0.04 eV and −2.12 eV, respectively. The HOMO is mainly located on the N atoms while the LUMO is at the peripheral side's B atoms for the BNNS nanostructure, whereas the HOMO and LUMO are mainly located on several definite C–C atom pairs, which are depicted in Fig. 1. For both nanosheets, a zero dipole moment is observed due to the symmetric charge distribution over the whole nanostructure.
EAds = ECS − Eadsorbent − EAPN | (2) |
Fig. 2 Representations of the optimized geometries, HOMOs, LUMOs, and MEPs of the CS1, CS2, and CS3 structures. |
The increase in energy due to the overlapping of the basis sets was adjusted with eqn (3),56 which is known as the basis set superposition error-corrected equation and is used to assess the corrected counterpoise energy.
EAds,CP = EAds + EBSSE | (3) |
The thermodynamic parameters were also inspected at standard temperature (298.15 K) and standard pressure (1 atm) to realize the thermal stability of the studied conjugated structures. During the chemical process, the change in enthalpy permits us to investigate whether a reaction is endothermic (ΔH > 0) or exothermic (ΔH < 0), and the change in Gibbs free energy gives us information about whether there is a spontaneous interaction (ΔG < 0) or not (ΔG > 0) between the adsorbate drug and the adsorbent. The following equation was adopted to estimate ΔG and ΔH:62
ΔU = UCS − Uadsorbent − UAPN | (4) |
The change in entropy was calculated by adopting the following equation:62
(5) |
It can be positive or negative. Here, a negative change indicates that the structures possess more thermodynamic stability.
From Table 1, we can see the adsorption behavior of the APN–GNS and APN–CNC conjugated structures, where APN interacts with GNS and CNC, maintaining a distance of several Angstroms. The observed BSSE-corrected adsorption energies are very low for all APN–GNS and APN–CNC conjugated structures. In addition, a negligible change in thermodynamic parameters was perceived (as shown in Table 2). Hence, energetic and thermodynamics stability have not been achieved by all the APN–GNS and APN–CNC conjugated structures. Although we have perceived better adsorption energy and thermodynamic parameters for APN–BNNS conjugated structures, which are also not sufficient to nominate the BNNS nanostructures as a carrier or sensor for the APN drug molecule.
In APN–BNNC conjugated structures, the APN drug is adsorbed on BNNC from three sites, the oxygen of the carbonyl group in the PD ring, the nitrogen of the PZ ring, and the nitrogen of the PD ring, to different boron atoms of BNNC, and it maintains minimum distances of 1.55 Å, 1.61 Å, and 1.63 Å from the adsorbent. Additionally, BSSE-corrected adsorption energies (EAds,CP) of −21.00 kcal mol−1, −22.33 kcal mol−1 and −20.90 kcal mol−1 were observed for CS1, CS2 and CS3 conjugated structures, respectively. Previous reports by Mohsen Asle Zaeem et al. and Tanveer Hussain et al. said that the value of EAds of ±1 eV (±23 kcal mol−1) is known as weak chemisorption or strong physisorption.63,64 So, it can be said that the BNNC nanocage interacts towards the APN drug molecule with a strong physisorption (weak chemisorption) process, which is feasible for a good adsorption–desorption manner with a reasonable recovery time. The wB97XD functional was also utilized to comprehend the dispersion effect on the adsorption process for all conjugated structures which increase the adsorption energy. The BSSE-corrected EAds,CP of CS1, CS2 and CS3 are −27.30 kcal mol−1, −30.09 kcal mol−1 and −30.13 kcal mol−1, respectively, which are slightly greater than the EAds,CP energies calculated with the B3LYP functional. So, it can be claimed by analyzing our investigated EAds,CP results with the help of both B3LYP and wB97XD functionals that weak chemisorption has occurred between the APN drug molecule and the BNNC nanocage.
In order to comprehend the thermodynamic stability, we calculated ΔH, ΔG, and ΔS for three studied conjugated structures of APN–BNNC and these are tabulated in Table 2. The negative values of ΔH, ΔG, and ΔS for the APN–BNNC structures indicate that the interactions are exothermic, spontaneous and thermodynamically ordered. The natural existence of the three studied APN–BNNC conjugated structures was proved by calculating the IR frequency in the ranges of 19.26 cm−1 to 3667.13 cm−1, 27.59 cm−1 to 3602.47 cm−1, and 23.75 cm−1 to 3599.90 cm−1 for CS1, CS2, and CS3, respectively.
The recovery time (τ), the time required for the desorption of an adsorbate from the adsorbent, is another crucial parameter in the drug sensing arena. Since APN–BNNC conjugated structures have attained more energetic and thermodynamic stability, it is essential to calculate the recovery time to nominate BNNC as an efficient sensor for the APN molecule. According to the investigations by S. Thomas and M. A. Zaeem, a short recovery time of an adsorbent is favorable for fabricating an efficient sensing device.65,66 By considering this issue, we have taken the initiative to evaluate the recovery time by the following equation:67
(6) |
The molecular electrostatic potential (MEP) map reveals the asymmetric charge distribution by showing the higher (positively charged area) and lower (negatively charged area) electrostatic potential area of a molecule. The MEP surfaces are well defined by the 0.0004 electron per bohr3 contour of the electronic charge density. The red to blue (−0.01 a.u. to 0.01 a.u.) colour scheme for the MEP surface indicates the electron-rich site named the electrophilic attack region to the electron-deficient site termed the nucleophilic attack region of the surface, respectively. The MEP maps of the conjugated structures (shown in Fig. S1†) show less alteration in charge density on the adsorbents and APN drug molecule surfaces, which confirms that unfavorable interactions have taken place between the APN dug molecule and the studied adsorbents (GNS, CNC and BNNS). In addition, overall, the red and blue colours are scattered over the whole conjugated structures for the studied APN–GNS, APN–CNC, and APN–BNNS conjugated structures. On the other hand, almost one side of the whole surface is occupied by the red colour (lower electrostatic potential) and the other side by the blue colour (higher electrostatic potential) in the case of APN–BNNC conjugated structures. To be precise, the portion of the APN molecule is blue, and the portion of BNNC is red, which indicates that charge transformation has taken place from the APN drug molecule to the BNNC nanocage. Hence, it has also been attested that APN–BNNC conjugated structures possessed more adsorption energy and more dipole moment than the other conjugated structures.
Moreover, the HOMO energies are stabilized at −6.74 eV, −6.76 eV and −7.00 eV from −7.71 eV and the LUMO energies are at −2.27 eV, −2.39 eV and −2.47 eV from −0.87 eV with respect to bare BNNC for CS1, CS2, and CS3 conjugated structures, respectively (as shown in Table 3). As well as that, for all the studied APN–BNNC conjugated nanostructures, the HOMO is localized on the adsorbent BNNC especially on the nitrogen atoms, whereas the LUMO is distributed over the whole structure of APN, as shown in Fig. 2. So, a shifting of the HOMO and LUMO levels occurs between BNNC and the APN drug, respectively, which predicts a favorable interaction in the case of APN–BNNC conjugated structures.
Insufficient changes in the energy gap (Eg) have been observed for APN–GNS and APN–CNC conjugated structures, which is supported by PDOS and TDOS studies of the adsorbate, adsorbents, and their conjugated structures. The decreases in Eg have been perceived as 19.49%, 16.37%, and 16.09% for CS4, CS5, and CS6 structures, respectively (as shown in Table 3). Additionally, in the PDOS and TDOS studies, a decrease in Eg in the energy band of BNNS has also been observed after interaction with the APN drug molecule. In the case of APN–BNNC conjugated structures, the HOMO–LUMO gaps are shifted from 6.84 eV to 4.47 eV, 4.36 eV and 4.52 eV which are 34.66%, 36.22% and 33.91% decreases for the CS1, CS2, and CS3 structures, respectively (as shown in Table 3). These data are comparable with previous studies by Alireza Soltani and coworkers.69–71 Also, according to Paria Fallahi et al., the decrease in Eg is related to the increase in conductivity of the nanostructure.72 Accordingly, this decrease in Eg for the interaction of APN with the BNNC nanostructure can produce electrical noise, which reveals the potential application of BNNC as an APN drug sensor.
We also performed a calculation of the PDOS of the adsorbate molecule and adsorbent nanostructures and the TDOS of the conjugated structures to realize the orbital hybridization by confirming the availability of the newly generated energy state in the energy band. In Fig. 3, several energy states can be seen in the energy gap of bare BNNC after interaction with the APN drug molecule. This means that orbital hybridization has occurred in the case of all the proposed APN–BNNC conjugated nanostructures. Hence, the energy gap of all the studied APN–BNNC conjugated structures has been reduced, which supports the change in the numerical value of the HOMO–LUMO gap.
Fig. 3 The molecular graphs, RDG scatter maps, RDG isosurfaces, and DOS of the CS1, CS2, and CS3 structures. |
The change in the energy gap (Eg) and the conductivity (σ) are related by the following equation.73
(7) |
(8) |
(9) |
(10) |
The global hardness (η) can be seen as a resistance to charge transfer, which means that the higher its value, the lower the chemical reactivity and the higher the chemical stability. It has been calculated to decrypt the essence of chemical reactivity between the proposed adsorbate and adsorbents (as shown in Table 4). We can observe from the data in Table 4 that the global hardness of BNNC has been reduced after interaction with the APN drug molecule from 3.42 eV to 2.24 eV, 2.18 eV, and 2.26 eV for the CS1, CS2, and CS3 structures, respectively. This is an indication of increasing chemical reactivity over that of bare BNNC. On the other hand, the global softness (S) and electrophilicity index (ω) of BNNC have increased from its pristine structures, which are shown in Table 4. In brief, it can be remarked that higher variation in global hardness and global softness, as well as in the electrophilicity index, have been perceived for APN–BNNC conjugated structures compared to other conjugated structures (as shown in Table 4). Hence, we can conclude that the BNNC is more interactive towards the APN drug molecule than other adsorbents.
System | μ | χ | η | ω | S |
---|---|---|---|---|---|
APN | −3.82 | 3.82 | 2.71 | 2.69 | 0.18 |
BNNC | −4.29 | 4.29 | 3.42 | 2.69 | 0.15 |
CS1 | −4.50 | 4.50 | 2.24 | 4.53 | 0.22 |
CS2 | −4.58 | 4.58 | 2.18 | 4.80 | 0.23 |
CS3 | −4.74 | 4.74 | 2.26 | 4.96 | 0.22 |
BNNS | −3.29 | 3.29 | 3.24 | 1.67 | 0.15 |
CS4 | −3.92 | 3.92 | 2.61 | 2.94 | 0.19 |
CS5 | −3.68 | 3.68 | 2.71 | 2.49 | 0.18 |
CS6 | −3.67 | 3.67 | 2.72 | 2.48 | 0.18 |
CNC | −4.61 | 4.61 | 1.26 | 8.45 | 0.40 |
CS7 | −4.61 | 4.61 | 1.23 | 8.63 | 0.41 |
CS8 | −4.63 | 4.63 | 1.24 | 8.65 | 0.40 |
CS9 | −4.59 | 4.59 | 1.26 | 8.40 | 0.40 |
GNS | −3.53 | 3.53 | 1.41 | 4.42 | 0.35 |
CS10 | −3.61 | 3.61 | 1.41 | 4.63 | 0.36 |
CS11 | −3.66 | 3.66 | 1.41 | 4.74 | 0.35 |
CS12 | −3.56 | 3.56 | 1.41 | 4.51 | 0.36 |
The route of charge transfer has also been elucidated by calculation of the electronic chemical potential as well as the fractional number of charges transferred (ΔN) (shown in Tables 4 and S2†). Generally, electrons flow from higher to lower electronic chemical potential until it becomes equal, which is known as the normal electron demand (NED). According to this statement, the electrons flow from the APN drug molecule (−3.82 eV) towards BNNC (−4.29 eV) in the case of APN–BNNC conjugated structures. The negative fractional number of charges transferred (ΔN = (μB − μA)/(ηA + ηB)) causes a negative change in the individual energy of the acceptor , and thus a negative ΔEB(A) reveals that the APN drug molecule is a donor and BNNC is an acceptor, which is in complete agreement with the MEP result. In addition, the positive change in the individual energy of the donor indicates that APN–BNNC conjugated structures are more stable than an individual BNNC or the APN drug molecule. Moreover, the negative value of the total stabilization energy (ΔESE(AB) = ΔEA(B) + ΔEB(A) = −(μB − μA)2/2(ηA + ηB)) shows that a favorable interaction has occurred between the APN drug molecule and BNNC.
System | Interacting atoms | Distance | ρbcp | ∇2ρbcp | Vbcp | Gbcp | Hbcp | −Gbcp/Vbcp |
---|---|---|---|---|---|---|---|---|
CS1 | B7–O25 | 1.55 | 0.118 | 0.456 | −0.255 | 0.184 | −0.070 | 0.724 |
N8–H37 | 1.74 | 0.049 | 0.108 | −0.036 | 0.031 | −0.004 | 0.875 | |
CS2 | B15–N29 | 1.61 | 0.124 | 0.334 | −0.258 | 0.171 | −0.087 | 0.662 |
N16–H36 | 2.22 | 0.019 | 0.065 | −0.013 | 0.015 | 0.001 | 1.102 | |
CS3 | N9–H36 | 2.16 | 0.021 | 0.060 | −0.014 | 0.015 | 0.0004 | 1.028 |
B14–N28 | 1.63 | 0.119 | 0.273 | −0.240 | 0.154 | −0.086 | 0.642 | |
N13–H38 | 2.44 | 0.014 | 0.057 | −0.009 | 0.012 | 0.002 | 1.266 | |
CS4 | H13–O73 | 2.33 | 0.013 | 0.041 | −0.010 | 0.010 | 0.0003 | 1.032 |
H12–O73 | 2.23 | 0.015 | 0.045 | −0.011 | 0.011 | 9.7 × 10−5 | 1.009 | |
N48–H85 | 2.29 | 0.015 | 0.038 | −0.010 | 0.010 | 4.8 × 10−5 | 1.005 | |
CS5 | N51–H84 | 2.36 | 0.013 | 0.033 | −0.008 | 0.008 | 0.000 | 1.016 |
N50–N76 | 3.69 | 0.003 | 0.012 | −0.002 | 0.002 | 0.001 | 1.379 | |
CS6 | N55–O73 | 3.50 | 0.004 | 0.016 | −0.002 | 0.003 | 0.001 | 1.382 |
N54–H85 | 2.40 | 0.012 | 0.032 | −0.007 | 0.008 | 0.0003 | 1.040 | |
N49–H86 | 3.50 | 0.002 | 0.006 | −0.001 | 0.001 | 0.0004 | 1.611 | |
CS7 | C12–O25 | 3.34 | 0.004 | 0.017 | −0.003 | 0.003 | 0.001 | 1.361 |
C8–H37 | 2.64 | 0.008 | 0.022 | −0.004 | 0.005 | 0.001 | 1.223 | |
CS8 | C23–H36 | 2.75 | 0.008 | 0.022 | −0.003 | 0.004 | 0.001 | 1.283 |
CS9 | C3–N26 | 3.74 | 0.003 | 0.009 | −0.002 | 0.002 | 0.0004 | 1.277 |
C16–C33 | 3.79 | 0.003 | 0.008 | −0.001 | 0.002 | 0.0004 | 1.366 | |
CS10 | H65–O73 | 2.61 | 0.007 | 0.026 | −0.005 | 0.006 | 0.001 | 1.189 |
H71–O73 | 2.57 | 0.008 | 0.028 | −0.005 | 0.006 | 0.001 | 1.151 | |
C52–H85 | 2.54 | 0.009 | 0.027 | −0.005 | 0.006 | 0.001 | 1.213 | |
CS11 | C26–H85 | 2.68 | 0.007 | 0.021 | −0.003 | 0.004 | 0.001 | 1.284 |
C28–H86 | 3.14 | 0.003 | 0.010 | −0.001 | 0.002 | 0.001 | 1.431 | |
CS12 | C16–H84 | 2.68 | 0.007 | 0.023 | −0.004 | 0.005 | 0.001 | 1.321 |
H64–N77 | 2.84 | 0.005 | 0.018 | −0.003 | 0.004 | 0.001 | 1.277 | |
H61–N77 | 2.69 | 0.007 | 0.023 | −0.004 | 0.005 | 0.001 | 1.218 |
σxy = Cxhx + Cyhy | (11) |
(12) |
The filled–empty NBO interaction energy, also known as the stabilization energy of the molecule E(2), is a measure of the stability of a molecule. A higher value of E(2) implies that a significant amount of electron density is delocalized from donor NBO to acceptor NBO and greater stability is attained.82 The stabilization energy is evaluated by using second-order perturbation theory and the associated delocalization of charges from donor NBO (i) to acceptor NBO (j) is calculated with the following equation.79,83,84
(13) |
In our study, the NBO analysis was accomplished by the DFT/B3LYP(6-31G(d,p)) level of theory via the NBO 3.1 program integrated into the Gaussian 09 package. The results of NBO analysis for our studied conjugated structures are tabulated in Tables 6 and 7. Our explanations are restricted to the most intra-NBO and inter-NBO interactions of the APN drug molecule and adsorbents. In our study, we found that the APN drug molecule is adsorbed on BNNC nanostructures by generating a sigma bond between them through a transfer of charges while the rest of the adsorbents interacted with the APN drug molecule through a transfer of charges, but no bond was created between them. In Table 6, we can observe σ(B7–O25), σ(B15–N29), and σ(B14–N28) bonds for CS1, CS2 and CS3 conjugated structures, respectively. It is notable that every bonding NBO must be balanced with a corresponding anti-bonding NBO;81 that is why we have observed the corresponding anti-bonding NBO σ*. It can also be observed that the contribution of the natural atomic hybrid orbitals of the corresponding atom in the APN drug molecule to the newly formed NBOs is larger than that of the adsorbent atoms. Let us explain the formation of a new NBO between B7 and O25 atoms in the case of CS1 conjugated structures. The sp4.79 natural atomic hybrid orbital of B7 and sp1.35 natural atomic hybrid orbital of O25 interact with each other and then form a σ(B7–O25) bond where O25 and B7 make 83.65% and 16.35% contributions, respectively.85 The properties of the new NBO are of a p-character rich NBO because the interacting atomic hybrid orbitals are controlled by p-character (as shown in Table 6). A similar pattern can also be perceived for the CS2 and CS3 conjugated structures.
System | Bond | Occupancy | EDA% | EDB% | Formed NBOs (σxy) | % s character in hybrid AO | % p character in hybrid AO |
---|---|---|---|---|---|---|---|
CS1 | σ(B7–O25) | 1.97755 | 16.35 | 83.65 | =0.4044(sp4.79)B7 + 0.9146(sp1.35)O25 | 17.17 | 82.29 |
42.46 | 57.52 | ||||||
σ*(B7–O25) | 0.10050 | 83.65 | 16.35 | =0.9146(sp4.79)B7 − 0.4044(sp1.35)O25 | 17.17 | 82.29 | |
42.46 | 57.52 | ||||||
CS2 | σ(B15–N29) | 1.97193 | 18.92 | 81.08 | =0.4350(sp4.83)B15 + 0.9004(sp1.30)N29 | 17.11 | 82.55 |
43.47 | 56.52 | ||||||
σ*(B15–N29) | 0.10135 | 81.08 | 18.92 | =0.9004(sp4.83)B15 − 0.4350(sp1.30)N29 | 17.11 | 82.55 | |
43.47 | 56.52 | ||||||
CS3 | σ(B14–N28) | 1.95770 | 18.59 | 81.41 | =0.4311(sp4.77)B14 + 0.9023(sp1.59)N28 | 17.28 | 82.38 |
38.65 | 61.34 | ||||||
σ*(B14–N28) | 0.10232 | 81.41 | 18.59 | =0.9023(sp4.77)B14 − 0.4311(sp1.59)N28 | 17.28 | 82.38 | |
38.65 | 61.34 |
System | Intramolecular donor–acceptor NBOs | Intermolecular donor–acceptor NBOs | ||||||
---|---|---|---|---|---|---|---|---|
Donor NBO(i) | Acceptor NBO(j) | E(2) kcal mol−1 | Donor NBO(i) | Acceptor NBO(j) | E(2) kcal mol−1 | |||
CS1 | LP(1) C30 | → | BD*(2) N26–C31 | 195.63 | LP(1) N8 | → | BD*(1) N27–H37 | 26.91 |
CS2 | LP(1) C30 | → | BD*(2) N26–C31 | 199.43 | BD(2) B6–N8 | → | BD*(1) B15–N29 | 12.74 |
CS3 | LP(1) C30 | → | BD*(2) N26–C31 | 208.75 | BD(2) B19–N20 | → | BD*(1) B14–N28 | 14.04 |
CS4 | LP(1) C78 | → | BD*(2) N74–C79 | 215.56 | BD(2) B44–N48 | → | BD*(1) N75–H85 | 4.34 |
CS5 | LP(1) C78 | → | BD*(2) N74–C79 | 216.06 | BD(2) B39–N51 | → | BD*(1) N74–H84 | 2.61 |
CS6 | LP(1) C78 | → | BD*(2) N74–C79 | 223.47 | BD(2) B34–N54 | → | BD*(1) N75–H85 | 2.15 |
CS7 | BD*(2) N28–C34 | → | BD*(2) C30–C31 | 96.10 | BD(2) C8–C15 | → | BD*(1) N27–H37 | 2.53 |
CS8 | BD*(2) N28–C34 | → | BD*(2) C30–C31 | 94.25 | BD(2) C5–C23 | → | BD*(1) N26–H36 | 1.70 |
CS9 | BD*(2) N28–C34 | → | BD*(2) C30–C31 | 95.89 | BD*(2) C30–C31 | → | BD*(2) C3–C16 | 0.44 |
CS10 | BD*(2) C48–C53 | → | BD*(2) C51–C54 | 243.80 | BD(2) C36–C52 | → | BD*(1) N75–H85 | 1.95 |
CS11 | BD*(2) C13–C15 | BD*(2) C10–C14 | 241.60 | BD(2) C26–C27 | → | BD*(1) N75–H85 | 0.73 | |
CS12 | BD*(2) C16–C33 | BD*(2) C37–C38 | 138.79 | BD(2) C16–C33 | → | BD*(1) N74–H84 | 0.99 |
The second-order perturbation interaction energies between filled NBOs and empty NBOs have been calculated and are tabulated in Table 7 along with donor–acceptor NBOs. The 0.50 kcal mol−1 and 0.05 kcal mol−1 threshold stabilization energies for intra-molecular NBOs and intermolecular NBOs have been printed, respectively. We can observe that more electronic charges have transferred between intramolecular NBOs indicating maximum stabilization energy, whereas less electronic charge transfer has occurred between intermolecular NBOs (as shown in Table 7). Maximum charge transfer between intermolecular NBOs of the APN molecule and adsorbents have been perceived for the APN–BNNC conjugated structures (as shown in Table 6). Finally, it can be said, by taking into account the stabilization energy (E(2)) and newly formed σxy, that covalent interaction has been observed for APN–BNNC conjugated structures. This is the reason behind the superior electronic properties achieved by APN–BNNC conjugated structures compared to other conjugated structures.
(14) |
The RDG will have large positive values in a region far from the molecule where the electron density is decaying exponentially to zero. In contrast, the RDG will have small values, approaching zero, for regions of high electron density, indicating both covalent bonding and noncovalent interactions. But at low electron density and low RDG, weak interactions such as van der Waals (vdW) are observed. However, different types of interaction (i.e., attractive and repulsive) can be observed at the same electron density/RDG. ∇2ρ is used to distinguish the different types of interaction by solving the above problem. In order to understand the interactions, ∇2ρ is decomposed into a sum of three eigenvalues of the electron density Hessian matrix along the three principal axes of maximal variation such as ∇2ρ = λ1(r) + λ2(r) + λ3(r), where λ1(r) < λ2(r) < λ3(r). The second eigenvalue (λ2(r)) is used to classify the types of interaction (λ2(r) < 0 for bonding, λ2(r) > 0 for nonbonding and λ2(r) ≈ 0 for vdW) depending on its positive or negative sign and the electron density delivers information regarding the strength of the interaction.87,88 Thus, the graph will be RDG versus sign (λ2)ρ instead of RDG versus ρ. In addition, the color-filled RDG isosurfaces deliver a rich visualization of different types of interactions as wide-ranging regions in real space, rather than only pairwise interaction between atoms. In our analysis, blue, green, and red zones indicate strong hydrogen bonding interaction, weak interaction and strong repulsion or steric interaction in both the RDG scatter map and the color-filled RDG isosurface map, respectively. To accomplish the RDG study, we used the Multiwfn 3.7 software package and VMD software was used to visualize the RDG isosurfaces.89,90 Our analysis in both the RDG scatter map and the color-filled RDG isosurface map will be limited to a discussion of intermolecular interaction.
According to the map of RDG versus sign(λ2)ρ, the RDG scatter map shows green spikes at low electron density and λ2(r) ≈ 0, which confirms that weak electrostatic interaction has occurred between the APN drug molecule and its adsorbents for the APN–GNS, APN–CNC, and APN–BNNS conjugated structures. In addition, the RDG isosurface map also confirms the weak electrostatic interaction by showing the green patches between the APN drug molecule and its adsorbents (as shown in Fig. S2†). Furthermore, at higher electron density and λ2(r) < 0, blue and green blended spikes were witnessed, which confirms that partial covalent interaction has occurred in the three studied APN–BNNC conjugated structures. In addition, the color-filled RDG isosurface map also confirmed the partial covalent interaction by showing the intermolecular bond as well as blue and green patches between the APN drug molecule and BNNC (as shown in Fig. 3). Moreover, our QTAIM data and NBO results also support the RDG analysis.
Hence, in accordance with the analysis of the RDG versus sign (λ2)ρ graph and RDG isosurface map, it can be concluded that higher interaction strength has been perceived for APN–BNNC conjugated structures due to the partial covalent interaction between the APN molecule and BNNC. That is why APN–BNNC conjugated structures achieved superior structural and electronic properties in favor of sensing than other conjugated structures.
System | DM | Eads | E(H) | E(L) | Eg | % ΔEg |
---|---|---|---|---|---|---|
APN | 4.85 | — | −6.56 | −1.03 | 5.53 | — |
BNNC | 0 | — | −7.70 | −0.81 | 6.89 | — |
CS1 | 12.22 | −27.21 | −7.00 | −1.82 | 5.18 | 24.81 |
CS2 | 13.88 | −28.73 | −7.00 | −1.89 | 5.11 | 25.82 |
CS3 | 6.95 | −26.45 | −7.02 | −1.97 | 5.04 | 26.79 |
BNNS | 0.01 | — | −6.58 | −0.08 | 6.50 | — |
CS4 | 4.87 | −5.61 | −6.56 | −1.14 | 5.42 | 16.66 |
CS5 | 5.10 | −1.48 | −6.57 | −1.04 | 5.53 | 14.94 |
CS6 | 4.76 | −1.75 | −6.57 | −1.05 | 5.52 | 15.05 |
CNC | 0 | — | −5.79 | −3.28 | 2.51 | — |
CS7 | 4.55 | −1.73 | −5.79 | −3.30 | 2.49 | 0.81 |
CS8 | 4.58 | −1.32 | −5.81 | −3.31 | 2.50 | 0.62 |
CS9 | 4.81 | −0.60 | −5.79 | −3.27 | 2.51 | −0.10 |
GNS | 0 | — | −5.10 | −2.28 | 2.82 | — |
CS10 | 4.74 | −2.43 | −5.10 | −2.28 | 2.82 | 0.11 |
CS11 | 5.01 | −0.34 | −5.13 | −2.31 | 2.82 | 0.08 |
CS12 | 4.97 | −1.53 | −5.09 | −2.27 | 2.82 | 0.15 |
The change in the HOMO–LUMO gap of the studied conjugated structures in the water medium has also been calculated and explained for nominating an electrical sensor for the APN molecule from among the studied adsorbents. In the case of APN–GNS and APN–CNC conjugated structures, there are no changes in Eg and an insufficient change in Eg has also been observed in the APN–BNNS conjugated structures. That means these three adsorbents are not efficient enough as electrical sensors. On the other hand, 24.81%, 25.82%, and 26.79% changes in the energy gap have been perceived for CS1, CS2, and CS3 structures, respectively. Furthermore, these variations in Eg of APN–BNNC in the water medium are good for sensing the APN drug molecule. Finally, the superior properties of APN–BNNC structures (highest Eads, DM, and change in HOMO–LUMO gap) in the water medium have also made the BNNC an invincible candidate for sensing the APN molecule in a polar medium, especially in water.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/d1ra06948a |
This journal is © The Royal Society of Chemistry 2021 |