Kasper M.
Vonk
,
E. W.
Meijer
and
Ghislaine
Vantomme
*
Institute for Complex Molecular Systems, Laboratory of Macromolecular and Organic Chemistry, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven, The Netherlands. E-mail: g.vantomme@tue.nl
First published on 29th September 2021
Controlling the reciprocity between chemical reactivity and supramolecular structure is a topic of great interest in the emergence of molecular complexity. In this work, we investigate the effect of a covalent reaction as a trigger to depolymerize a supramolecular assembly. We focus on the impact of an in situ thiol–ene reaction on the (co)polymerization of three derivatives of benzene-1,3,5-tricarboxamide (BTA) monomers functionalized with cysteine, hexylcysteine, and alkyl side chains: Cys-BTA, HexCys-BTA, and a-BTA. Long supramolecular polymers of Cys-BTA can be depolymerized into short dimeric aggregates of HexCys-BTAvia the in situ thiol–ene reaction. Analysis of the system by time-resolved spectroscopy and light scattering unravels the fast dynamicity of the structures and the mechanism of depolymerization. Moreover, by intercalating the reactive Cys-BTA monomer into an unreactive inert polymer, the in situ thiol–ene reaction transforms the intercalator into a sequestrator and induces the depolymerization of the unreactive polymer. This work shows that the implementation of reactivity into supramolecular assemblies enables temporal control of depolymerization processes, which can bring us one step closer to understanding the interplay between non-covalent and covalent chemistry.
Recently, chemists have combined covalent and non-covalent synthesis for the construction of complex molecular systems.9 Methods to construct these complex systems require implementing chemical reactivity into synthetic supramolecular assemblies. Inclusion of chemical functionality in the assembled building blocks enables in situ covalent modification, which induces changes in the structural unit and consequently impacts the assembly properties. In supramolecular polymerization, the lability of the non-covalent interactions makes the structures intrinsically dynamic and sensitive to changes in molecular functionalities and external conditions. Therefore, aside from increase in temperature,10–13 addition of cosolvent,14,15 and use of supramolecular additives,16–19 the modification of structural units by covalent reactions would provide an alternative method to control supramolecular polymerization. Elegant examples have been presented in which adaptation, regulation and replication can be demonstrated by integrating chemical reactions with polymerization processes.20–24 Complementarily, deepening our understanding on the molecular mechanisms at stake and structure–property relationships is essential as the complexity of molecular systems is ever growing, in particular in the cooperative supramolecular polymerization of reactive multi-component systems.
The assembly of benzene-1,3,5-tricarboxamides derivatised with amino-ester side chains (ester-BTAs) has been reported in great details.25,26 Studies have demonstrated that the nature of the side chains dramatically influences the structure, length, and mechanism of formation of the aggregates. Ester-BTAs are known for their ability to self-assemble into helical stacks in apolar solvent by formation of an intermolecular three-fold hydrogen bonding between the amides or into dimeric structures by six-fold hydrogen bonding of the ester carbonyls depending on the nature of the side chains, the concentration and the temperature of the solutions (Scheme 1).25 Recently, these chiral ester-BTA have been shown to intercalate into achiral assemblies and generate homochiral helices, indicating the effectiveness of ester-BTAs in steering the co-assembly process.27–30
Scheme 1 An overview of the structures of benzene-1,3,5-tricarboxamides Cys-BTA and HexCys-BTA and the transformation induced by the thiol–ene reaction. (A) The molecular structure of the helical stack formed by Cys-BTA derived from X-ray data31 and (B) the dimeric hydrogen-bonded structure formed by HexCys-BTA derived from DFT calculations.25 |
Here, we report on the controlled depolymerization of supramolecular 1D polymers into well-defined dimers triggered by a covalent reaction on the side chains of the monomer. For the purpose of this study, we selected Cys-BTA, a monomer of BTA derived from cysteine with a thiol containing residue. In the assembly of this monomer, a morphological change from stacks to dimeric species is induced by performing a covalent reaction on these reactive thiol groups. The changes in both the hydrogen bond pattern and the size of the aggregates were analysed by spectroscopic and light scattering techniques to follow the kinetics of the reaction. A detailed analysis was conducted to understand how the differences in molecular structure of the monomers (reagents and products) and the kinetics of the thiol–ene reaction affect the depolymerization and the overall mechanism of the process. Moreover, an unreactive achiral alkyl-BTA monomer copolymerized with a Cys-BTA additive was also depolymerized upon performing the thiol–ene reaction on Cys-BTA. These results demonstrate how an unreactive monomer in a multi-component system can be depolymerized by a covalent reaction through competitive interactions with a reactive sequestrator.
Assembly in bulk | Assembly in solution | ||||
---|---|---|---|---|---|
Structure | T c | Structure | c* | Viscosity | |
a Crystallization transition temperature (Tc) determined with DSC using a cooling rate of 5 K min−1. b The critical concentration (c*) from which stacks predominate over dimers in MCH solution investigated at 20 °C. c No transition between dimers and stacks have been observed in the range of concentrations 0.05–10 mM at 20 °C. | |||||
Cys-BTA | Stacks | 170 °C | Dimers + stacks | 0.150 mM | Viscous |
HexCys-BTA | Stacks | 130 °C | Dimers | —c | Fluid |
Fig. 1 shows that the IR spectrum of Cys-BTA in 1 mM methylcyclohexane (MCH) solution displays an N–H stretch at about ≈3229 cm−1, the unbonded ester at ≈1748 cm−1, CO amide I at ≈1644 cm−1, and the amide II at ≈1558 cm−1. The unbonded ester and bonded carbonyl of the amide suggests the presence of one-dimensional polymers stabilized by helically ordered, intermolecular hydrogen-bonds. In contrast, the IR spectrum of HexCys-BTA presents vibrations for the NH stretch at ≈3388 cm−1, the bonded ester at ≈1737 cm−1, the free amide I at ≈1675 cm−1, and the free amide II at ≈1527 cm−1. In this case, the bands imply the presence of dimers with intermolecular hydrogen bond formation between the N–H protons and the ester carbonyls. The formation of helically-ordered polymers and dimeric structures for Cys-BTA and HexCys-BTA, respectively, are in line with previous studies on the aggregation of these ester-BTAs.25 From the IR data, the critical concentration (c*) for polymerization of Cys-BTA was determined to be approximately 0.150 mM in MCH at 20 °C (Fig. S9†), below which the dominant species shifted from the helical assemblies to the dimers. HexCys-BTA remained in its dimeric form irrespective of concentration, indicating that the steric hindrance posed by the hexyl group prevents further aggregation even at high concentrations.
CD spectroscopy provides further evidence for the existence of the assemblies determined by IR spectroscopy. Fig. 1 shows that at 50 μM in MCH, both Cys-BTA (dashed blue trace) and HexCys-BTA (dashed orange trace) display the chiroptical signatures of dimers (maxima at λ− = 205 nm, λ+ = 225 nm, and λ− = 255 nm). While no change in the shape of the CD spectrum of HexCys-BTA (orange trace) occurred upon increasing the concentration to 0.2 mM, the spectrum of Cys-BTA (blue trace) shows both a shift for the maximum λ+ = 225 nm to 220 nm and the disappearance of the minimum at λ− = 255 nm. This transition indicates the formation of helical stacks at a concentration of 0.2 mM. Moreover, NMR spectroscopy of 5 mM MCH solution of Cys-BTA (Fig. S10A†) confirms the aggregation into large assemblies as only broad signals are observed and no signals related to protons of the BTA core are visible. In contrast, 5 mM MCH solution of HexCys-BTA shows well-resolved signals, confirming the formation of well-defined dimers because of the diastereotopicity of the H1 and H2 protons in the ester-bonded dimer (Fig. S10B†).25,32 Additionally, in the more polar solvent CHCl3, a single signal is observed at 4.2 ppm indicating the presence of only monomers in solution (Fig. S10C†). In MCH, splitting of this same signal at 4.2 ppm occurs which is characteristic of six-folded hydrogen bonding. Additionally, fitting of the scattering curves to a cylindrical model with a fixed radius of 6 nm also provided us with an approximate length of 180 nm for the helical Cys-BTA assembly (Fig. S11†).33 Variable temperature measurement in CD also revealed that at a concentration of 200 μM in MCH, the homodimer of HexCys-BTA remains stable between 10 °C and 90 °C, whereas the CD spectrum of Cys-BTA at the same concentration shifts from a helical to a dimeric shape around 40 °C (Fig. S12†). The lack of isodichroic point for Cys-BTA further supports the presence of multiple species (monomers, short aggregates and stacks) co-existing in solution.24 The relatively low temperature required for this change in morphology is indicative of the instability of the helical assembly at this specific concentration (Fig. S12†).
To understand the mechanism of dimerization in more detail, we explored the possibility of heteroaggregates formation between HexCys-BTA and Cys-BTA (Fig. 2). This study is similar to previously reported results on the mixing of dimeric ester-BTA and polymeric alkyl-BTA.27,33 IR and CD data point to the exclusive formation of heterodimers between HexCys-BTA and Cys-BTA above 50 mol% of HexCys-BTA (Fig. 2). Decrease of the ratio of HexCys-BTA below 50 mol% leads to the co-existence of heterodimers, homodimers of HexCys-BTA and Cys-BTA dominated fibres with intercalated HexCys-BTA. In details, the comparison of the IR spectra of 1 mM MCH solutions of Cys-BTA/HexCys-BTA mixtures (blue to orange traces in Fig. 2B) shows a transition from helical stacks to dimeric species above 50 mol% of HexCys-BTA indicating the interaction between the two monomers. Furthermore, it shows that addition of 50 mol% of HexCys-BTA is sufficient to depolymerize the helical assembly by formation of heterodimers. Even at 10 mol% of HexCys-BTA, a small band at 1675 cm−1 can be observed, which corresponds to the formation of dimers and thus indicates the ability of HexCys-BTA to act as a sequestrator by stabilizing the free Cys-BTA monomers.24 The CD spectra of the Cys-BTA/HexCys-BTA mixtures show a similar trend where a small negative minimum at λmin = 255 nm can be observed, which indicates the presence of dimers (Fig. 2A).
To elucidate in detail the efficiency of the in situ depolymerization, we conducted a series of experiments analysed by NMR, IR, CD, and static light scattering (SLS) (Fig. 3–5). Addition of 0.3 eq. of catalyst 2,2-dimethoxy-2-phenyl acetophenone (DMPA) and 3 eq. of 1-hexene (stoichiometric amount) to a solution of Cys-BTA (MCH, 1 mM) and subsequent irradiation with UV light for 10 minutes, results in a shift in the CD signals from the helical assembly to the chiroptical signatures of dimers (Fig. 3A). This observation suggests the in situ conversion of Cys-BTA to HexCys-BTA. 1H-NMR spectroscopy confirms this in situ conversion, as new and sharper signals corresponding to the formation of HexCys-BTA emerge in the spectrum (Fig. S13C†) attributed to short defined aggregates of HexCys-BTA (Fig. S13D†).
Kinetics experiments give valuable information on the mechanism of the depolymerization. Interestingly, by combining different characterization techniques, both changes in structural morphologies and chemical conversion can be followed over time at various concentrations. Time-resolved IR spectroscopy was used to provide insights into the changes from polymers to dimers and chemical conversion over time (Fig. 4), while kinetics of the reaction followed by SLS (Fig. 3B) and CD (Fig. S14†) gave the change in the aggregate size and morphology, respectively. Over 20 minutes irradiation of a 1 mM MCH solution containing Cys-BTA, 1-hexene (3 eq.), and DMPA (0.3 eq.), a shift in the distinctive bands of the NH stretch (from ≈3240 cm−1 to ≈3389 cm−1) and the three carbonyl bands (between 1500 and 1800 cm−1) was observed in IR spectroscopy and attributed to the change in hydrogen bonding pattern from helical assemblies to dimers (Fig. 4). Moreover, the band at ν = 2559 cm−1, distinctive of the unreacted thiol moiety, allows to follow the quantitative conversion of free thiol over 20 minutes (Fig. 4). Kinetics of the conversion of the thiol and the loss of polymers show a similar shape (Fig. S15†). However, the disappearance of these polymers exhibits a lag time (about 2 minutes) in comparison to the thiol conversion, indicating that the thiol–ene reaction does not immediately result in a change of the assembly. The presence of such a lag time was already noted on the kinetics of “sergeant and soldiers” experiments with BTA, which is attributed to the exchange dynamics between the two components.34 The depolymerization of Cys-BTA elongated structures over the course of the thiol–ene reaction was also confirmed by SLS (Fig. 3B and S11†). Without the catalyst and 1-hexene, no change in size of the aggregates was observed upon UV irradiation, whereas when these reactants are present a decrease in fibre length was observed after 5 minutes, until the fibres disappear. Combined with the fact that the thiol–ene reaction, unlike most radical reactions, is not affected by oxygen in the air,35 it indicates that the observed changes over time are the result of the thiol–ene reaction between the terminal thiol unit on Cys-BTA side chain and the double bond of hexene to form HexCys-BTA. Conversion of Cys-BTA into HexCys-BTA decreases the free monomer concentration of Cys-BTA and induces the formation of heterodimers Cys-BTA/HexCys-BTA, which therefore pushes the thermodynamic equilibrium of formation of Cys-BTA polymers towards depolymerization.
The normalized kinetic profiles followed at different concentrations between the different techniques were compared (ranging from 0.2 to 10 mM MCH solutions from CD, IR, and SLS kinetic data, Fig. 5A) and no major difference in kinetics was observed. The data were fitted to first order kinetics, which is in correspondence with the usual dependence on the thiol concentration for the thiol–ene reaction between a large variety of thiol/alkene pairs.36,37 Due to the relatively high light intensities used in this study (70 W cm−2), we assume that the concentration of free radicals reaches its steady state quickly and ultimately be of negligent impact. Furthermore, we assume that thus the chain transfer step (movement of the radical from the formed sulfide to a new thiol group) can be considered as the rate-limiting step.38,39 When the reaction is performed with low light intensity (365 nm, ∼7 mW cm−2), and followed by IR, the kinetics of thiol conversion and polymers disappearance overlap with approximately 50% conversion of the thiol after 23 minutes of irradiation corresponding to 50 mol% of the polymer disappearance (Fig. S17†). This result is surprising because the presence of 50 mol% HexCys-BTA with Cys-BTA normally results in the formation of heterodimers. We attribute this difference to the formation of asymmetric mono- and di-substituted Cys-BTA, which are less bulky than HexCys-BTA and could therefore more easily intercalate into the Cys-BTA stacks.
Fig. 5 (A) The normalized kinetics of the IR (ν = 2559 cm−1, 10 mM in MCH, 70 mW cm−2 or 2 mM in MCH, 7 mW cm−2 for IR low light intensity), CD (at λ = 214 nm, 0.2 mM in MCH), and SLS data (0.5 mM in MCH) showing the change in signal intensities over time during UV irradiation at 20 °C. Fitting of the data is given in Fig. S16.† (B) The normalized data of the change in CD intensity at λ = 214 nm during the thiol–ene reaction performed on pure Cys-BTA (blue) and on the 3/1 Cys-BTA/a-BTA mixture (75 mol% Cys-BTA, black) at 0.2 mM in MCH at 20 °C. The dotted lines are the fitted data to first order kinetics (see ESI†). |
The depolymerization of the supramolecular aggregates can also be probed on a macroscopic scale. The ability of BTAs with alkyl side chains to form gels in apolar solvent is a well-known feature.40 The addition of catalyst and 3 eq. of hexene to a gel of Cys-BTA (40 mM in MCH) and irradiation with UV light resulted in an immediate loss in viscosity and the self-supporting properties of the gel (Fig. S18†). This loss of gel property is attributed to the in situ thiol–ene reaction, which initiates the covalent modification of Cys-BTA to form HexCys-BTA and results in the disassembly of the helical structures into dimers.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/d1sc04545h |
This journal is © The Royal Society of Chemistry 2021 |