Claudia
Steinem
*ab and
Michael
Meinecke
*bc
aInstitute for Organic and Biomolecular Chemistry, University of Göttingen, Tammannstr. 2, 37077 Göttingen, Germany
bGöttinger Zentrum für Molekulare Biowissenschaften – GZMB, 37077 Göttingen, Germany. E-mail: csteine@gwdg.de; mmeinec@gwdg.de
cDepartment of Cellular Biochemistry, University Medical Center Göttingen, Humboldtallee 23, 37073 Göttingen, Germany
First published on 12th May 2020
Cellular membranes are anything but flat structures. They display a wide variety of complex and beautiful shapes, most of which have evolved for a particular physiological reason and are adapted to accommodate certain cellular demands. In membrane trafficking events, the dynamic remodelling of cellular membranes is apparent. In clathrin-mediated endocytosis for example, the plasma membrane undergoes heavy deformation to generate and internalize a highly curved clathrin-coated vesicle. This process has become a model system to study proteins with the ability to sense and induce membrane curvature and over the last two decades numerous membrane remodelling molecules and molecular mechanisms have been identified in this process. In this review, we discuss the interaction of epsin1 ENTH domain with membranes, which is one of the best-studied examples of a peripheral and transiently membrane bending protein important for clathrin-mediated endocytosis.
Many adaptor molecules are peripheral membrane proteins with the ability to induce membrane curvature. Several molecular mechanisms of protein-dependent membrane deformation have been described.6–9 Epsins belong to such adaptor molecules as they facilitate membrane binding and protein recruitment. They are part of a conserved family of proteins that are involved in CME and other membrane trafficking events. The best studied member of this family is the mammalian epsin1, though in animals at least three other proteins, epsin2, epsin3 and epsinR, have been identified.10 The general domain structure of epsins is similar (Fig. 1). At the very N-terminus a tightly folded, membrane-binding ENTH (epsin N-terminal homology) domain is found. The C-terminus is comprised of multiple protein–protein interaction domains and is believed to mainly contain intrinsically disordered amino acid stretches.11,12 Through short protein–protein interaction motifs, epsin1 is able to bind to the α-ear of the adaptor complex AP2, to clathrin heavy chains and to Eps15 and intersectin,13–16 all proteins involved in CME. It also contains ubiquitin binding motifs, most probably to recruit ubiquitinated receptors destined for degradation into clathrin-coated vesicles.17–20 There is however a debate if epsin's role in CME might be more general.21,22 Overall, the membrane remodelling activity of epsins has been studied much more extensively than their physiological role in specific membrane trafficking pathways.
The N-terminal ENTH domain has been studied in some detail and multiple high-resolution structures are available.23 At its very N-terminus, the compact globular, α-helical domain shows in solution an unstructured amino acid stretch.24 The ENTH domain binds to membranes in an phosphoinositide-dependent manner with a preference for phosphatidylinositol-4,5-bisphosphate (PIP2).25 Upon binding to PIP2 the unstructured N-terminus folds into an amphipathic helix referred to as α0 (Fig. 2A and B).26 Basic residues on the inner side of α0 stabilize PIP2 binding and position the hydrophobic side of α0 in contact with the membrane to bind.26–28
Fig. 2 (A and B) Atomic structure of ENTH domains in the absence (A) and presence (B) of PIP2. (C and D) Electron micrographs of liposomes in the presence of ENTH domains under the same conditions shown above (pictures taken from Tarasenko et al.35). |
It was noted early on that membrane binding of the ENTH domain leads to membrane deformation (Fig. 2C and D).26 This effect was classically studied using various model membrane systems discussed in Section 3. Another class of proteins that are found in CME and many other membrane trafficking events are the BAR (bin/amphiphysin/rvs) domain containing proteins.29 BAR domain containing proteins also transiently interact with membranes and have the ability to induce membrane curvature.30–32 The reader is referred to excellent reviews on BAR domains.4,29,33,34 The discovery of peripheral membrane proteins that transiently interact with and have the ability to change the morphology of membranes sparked the publication of a wealth of papers identifying proteins that are important to shape the complex and beautiful structure variety of cellular membranes.
Epsin1 not only binds and deforms membranes but is also able to recruit clathrin and promote its oligomerisation into cage-like structures.26 It is hence believed that the local curvature generated by epsin is stabilized by clathrin.8 Some N-BAR domain containing proteins might have evolved to harbour both, curvature induction and stabilization in one molecule.34,42 These molecules display amphipathic helices at the N-terminus of their crescent-shape BAR domains (hence their name N-BAR) and as such can induce and stabilize membrane curvature.
Although, theoretical and structural studies have confirmed that α0 indeed inserts into the bilayer and structure-to-function mutants, with decreased hydrophobicity of the amphipathic α0 show less pronounced effects on membrane morphology,26,37,38,43 the view that the insertion of a small amphipathic domain is the main driving force behind membrane curvature generation by epsin1 and other proteins was challenged several times. Campelo et al.41 presented calculations based on a numerical solution of an analytical continuum mechanics model that suggests conditions under which α0 alone can drive membrane curvature. However, in order to induce high degrees of membrane curvature, an incredibly high protein density on the membrane would have to be established.41,44,45 In case of amphiphysin, it was even shown that α0 did not generate significant membrane curvature in the absence of the BAR domains.46 Similarly, shallow membrane insertion by the N-terminal amphipathic helix of the N-BAR domain of endophilin, another endocytic accessory molecule, was found to have no direct impact on membrane remodelling.42 Hence, a generally agreed consensus regarding the role of α0 has not been reached.
Stackowiak et al.47,48 proposed macromolecular crowding to be the main driving force for membrane deformation (Fig. 3). Similar results were shown by the Baumgart group.49 In these studies, the generation of membrane curvature could be uncoupled from amphipathic helix insertion. Even in the absence of α0, membrane deformation could be detected if protein coverage of a membrane was above 20%.48 In this crowding model, the energy to remodel a lipid bilayer is generated by collisions between membrane bound proteins. The notion that intrinsically disordered protein domains, like found in the C-terminal domain of epsin1, enhances membrane curvature sensing, is in favour of such crowding model.12
Our own results, showing that ENTH domains decrease lateral membrane tension and thereby lower the needed energy to induce membrane curvature, is in line with both models.50 We also recently found that the membrane lipid composition plays a crucial role in epsin1 dependent membrane remodelling. Phosphatidylserine (PS) induces the oligomerisation of ENTH domains and therefore high local protein densities. This in turn is a prerequisite for membrane deformation and efficient CME (Steinem and Meinecke, manuscript in revision). It might very well be that the molecular mechanism used by epsin1 to deform membranes is a combination of different effects relying on a cooperativity between protein–protein and protein–membrane interactions.
Lately, the degree of membrane curvature induced by epsins has gained renewed attention. As discussed, multiple studies found that the addition of epsin1 ENTH domain to membranes results in the induction of membrane curvature. This was classically shown by tubulation of large unilamellar vesicles (Fig. 2C and D). A recent study found though, that the ultimate consequence of ENTH–membrane interaction, and here especially the insertion of α0, is vesiculation rather than tubulation.21 The authors claim to have observed this vesiculation phenotype before26 when they used ENTH domain mutants with increased hydrophobicity at the polar side of α0. They now concluded that the insertion of amphipathic helices results in membrane fission and could hence facilitate the final steps of CME, where a clathrin-coated vesicle is internalised by a scission reaction. Epsin shows a similar recruitment profile during clathrin-mediated endocytosis as clathrin.51 Hence, it is not clear if epsin is particularly enriched at the late fission stage of clathrin mediated endocytosis and it will be interesting to see if it really facilitates the fission reaction. In light of results showing protein crowding rather than shallow insertion drives membrane curvature,42,52 and that only high concentrations of the ENTH domain generate curvature and lead to membrane fission, although less efficient than dynamin mediated fission,53 more work will be needed to fully understand the molecular mechanism of ENTH-dependent membrane remodelling and its physiological function.
Compared to small and large unilamellar vesicles with a large intrinsic curvature, giant unilamellar vesicles (GUVs) with a size of 5–50 μm in diameter are quasi-planar on the scale of individual proteins, large enough to be observed by optical microscopy and amenable to micromanipulation. In the most basic approach, GUVs labelled with a fluorescent dye are incubated with fluorescently tagged protein. Under certain conditions, i.e., at rather low membrane tension and high protein concentration, membrane tubulation or invagination can be observed by confocal laser scanning microscopy.54 For the ENTH domain we are only aware of two studies, in which tubules, generated by the interaction of ENTH with GUVs, have been described.38,48 This is probably due to the fact that the insertion of α0 of ENTH destabilizes the membranes resulting in bursting of the vesicles rather than tubule formation like observed for other membrane shaping proteins such as BAR domains.
Another membrane model that is based on GUVs is to use micropipette-assisted pulling of cylindrical tethers. In this experimental setup, a GUV is aspirated in a micropipette that sets the membrane tension σ. A membrane nanotube is pulled out from the GUV by tethering the vesicle via streptavidin–biotin to a micrometre sized bead held by a second pipette55 or trapped in optical tweezers (Fig. 4A).56 Using this approach, connected membrane regions differing in curvature by orders of magnitude are obtained, which allows quantifying the partitioning of peripherally binding proteins in membrane curvature gradients.55,57 With this membrane system, Baumgart and co-workers quantified systematically the curvature dependence of the ENTH area density on cylindrical membranes with controlled curvature.58 They adjusted the curvature by changing the membrane tension σ and monitored the fluorescence intensity of a construct composed of ENTH and green fluorescent protein (GFP) (ENTH–GFP) bound to membrane tethers composed of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC)/PIP2 (99:1) (Fig. 4B and C). If ENTH bound curvature-independently, the GFP fluorescence would be expected to decrease as σ is increased. However, they observed that the GFP-fluorescence on the tether markedly increased with increasing σ indicating curvature sensing of the protein.
Fig. 4 Curvature partitioning of ENTH–GFP on tubular membranes. (A) Schematic drawing of a membrane tether that is formed from a GUV using optical tweezers. Image taken from Bassereau et al.59 (B) A membrane tether composed of POPC/PIP2 (99:1) was formed by micropipette pulling from a GUV. (a and c) Green channel detecting ENTH–GFP fluorescence; (b and d) red channel detecting Texas Red DPPE fluorescence at two different membrane tensions. Scale bar: 3 μm. (C) Plot of the normalized ratio of green and red channel fluorescence intensities (Ir = Igreen/Ired) as a function of the square root of membrane tension revealing a linear relationship according to eqn (1) and (2). Images taken from Capraro et al.58 |
From the normalized fluorescence intensity ratios Ir/I0r, with Ir = Igreen/Ired as a function of membrane tension, Baumgart and co-workers were able to extract Leibler's thermodynamic curvature–composition coupling coefficient Λ according to the following relation (eqn (1) and (2)):58,60
(1) |
κeff = κ0 − Λ2χ | (2) |
(3) |
In another study Baumgart and coworkers61 made use of wavy surfaces to focus only on the curvature sensing properties of ENTH. They engineered a solid supported wavy membrane with continuous curvatures bearing positive and negative regions allowing an evaluation of the curvature sensitivity of ENTH. A topographical pattern with a wavelength of 1 μm and a depth of 110 nm was generated on a glass support onto which fluid lipid membranes composed of 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC)/PIP2 (99:1) were attached to. ENTH was found to preferentially partition into positively curved membrane regions with a protein density that varied monotonically in the curvature range yielding an increase in the normalized (relative to the average) fluorescence intensity of ENTH–GFP from 0.79 (at the most negative curvature) to 1.46 (at the most positive curvature). As they worked with the same protein construct, they also compared the curvature sensing of ENTH–GFP between free-floating (tether–GUV system) and the supported wavy membranes. In the tether–GUV system, membrane curvatures are accessible from about 0.01–0.11 nm−1 compared to −0.002–0.003 nm−1 for wavy membranes. It turned out that the supported wavy membranes sorted the protein more strongly than the tether–GUV system, which was hypothesized in terms of out-of-plane undulations occurring in freestanding membranes, which do not occur in the supported case. Of note, both membrane systems are under high tension so that this hypothesis needs to be further proven. The tether–GUV experiments with ϕv ≠ 0 show the fundamental coupling between membrane curvature sensing and generation. They are synergistically coupled phenomena both quantified through the parameter Λ.
More proof of the ENTH domain's curvature sensing activity was delivered by Pucadyil and co-workers.62 In this study the authors used a different low-tension model membrane system called SUPER templates. Here, a membrane reservoir is tubulated either by epsin or by extrusion through buffer flow. In the latter case, epsin was found to preferentially bind to membrane tubes. Interestingly, the authors could also show the recruitment of clathrin to highly curved membrane areas via epsin.
To investigate the influence of ENTH binding on the mechanical properties of membranes in the absence of strongly curved membranes, we established a GUV system, where the GUVs are adhered to a surface via biotin–avidin and Mg2+.50 These GUV membranes are quasi-planar. A change in the Mg2+ concentration then allowed us to adjust the lateral membrane tension by tuning the adhesion strength of the GUV to the surface mediated by Mg2+ ions. With this approach, we covered a lateral membrane tension regime of 0.08–1.02 mN m−1. To investigate the influence of ENTH binding on the adhered vesicles, we prepared GUVs composed of DOPC/1,2-dioleoyl-sn-glycero-3phosphoethanolamine (DOPE)/cap-biotin-PE/Atto488-1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine (DPPE) doped with PIP2 (66.2:30:2:1:0.8) in the presence of 0.5 mM and 2 mM MgCl2. The resulting mean membrane tensions σ were 0.08 mN m−1 and 0.52 mN m−1, respectively. Dependent on the pre-adjusted lateral membrane tension, two different behaviours were observed after ENTH-addition. At low lateral membrane tension (σ = 0.08 mN m−1, cMg = 0.5 mM), part of the GUVs showed tubule formation upon ENTH binding (Fig. 5A). Major part of the GUVs, however showed an increase in adhesion area indicative of transient reduction in lateral membrane tension. If GUVs with a larger membrane tension of σ = 0.52 mN m−1 (cMg = 2 mM) were incubated with ENTH, only an increase in contact adhesion area was observed (Fig. 5B).
Fig. 5 (A) Tubulation after ENTH binding to a GUV with low membrane tension. Time series of three-dimensional reconstructions of spinning disk confocal images of an adhered GUV adhered at low membrane tension. After ENTH addition (t = 0 min), the GUV starts tubulating and forms tethers. Scale bars: 10 μm. (B) Flattening of a GUV after ENTH binding at larger membrane tension. Time series of three-dimensional reconstructions of spinning disk images of an adhered GUV at higher membrane tension. The GUV starts to flatten after ENTH addition (t = 0 min). Scale bars: 20 μm. Figure adapted from Gleisner et al.50 |
From our results and theoretical considerations, we concluded that a substantially reduced area compressibility modulus KA is responsible for the observed flattening (increased adhesion area) of the adhered GUVs. We calculated that KA is reduced from 265 mN m−1 to 145 mN m−1 independent of the initial lateral membrane tension. In terms of thin plate theory of a continuous sheet, this implies that also the bending rigidity κ is reduced, as KA is related to κ according to eqn (4):
(4) |
A membrane system different from GUVs has been developed in recent years by our groups to investigate ENTH-membrane interactions. The idea was to generate a setup that provides slightly curved membranes, which are free-standing but still rather stable and well localized on a surface.64 To achieve this, we established planar and curved pore-spanning membranes (PSMs)65–67 that suspend a highly ordered array of cavities with pore diameters of 850 nm in a Si/SiO2 substrate, which separate an aqueous compartment (Fig. 6). If an osmotic gradient ΔO is applied across the planar membranes, the bilayers start protruding leading to curved membranes. By using different osmotic gradients, the heights of the protruded membranes can be controlled (Fig. 6A). The protrusions are readily visible in the confocal fluorescence images, while the membrane on the Si/SiO2 support are barely discernible owing to the quenching of the fluorescence on the support.
Fig. 6 (A) Confocal z-stack fluorescence microscopy images of an array of Texas Red DPPE labelled PSMs composed of POPC at different osmolarity gradients. The yellow lines (x–y-plane) show the positions of the z-profiles depicted below. The schematic drawings at the bottom illustrates the different stages of membrane protrusions as a function of osmotic pressure difference. Scale bars: 5 μm, height of z-sections: 5 μm. (B) Heights of the protrusions of PSMs as a function of the applied osmolarity gradient ΔO obtained by confocal laser scanning fluorescence microscopy (black circles) and scanning ion conductance microscopy (green diamonds). The solid lines are simulations with different lateral membrane tensions, the dotted line is the best fit. Figure adapted from Gleisner et al.64 |
Compared to wavy membranes on a solid support and membrane tubes, these bilayers are only slightly curved. Compared to the adhered GUVs, the major difference is that the GUVs are assumed to enclose a constant volume, while in case of PSMs, the entire membrane patch slides on the surface and upon an osmotic change, the entrapped volume underneath the membranes change. Area dilation in this regime is negligible. We treated the protrusions as a function of the osmotic pressure difference ΔΠeq = RTΔO with the Young–Laplace equation (eqn (5)):
(5) |
With this approach, we calculated a constant lateral membrane tension of this membrane system of σ = 2.1 mN m−1 in agreement with previous studies, where we used atomic force microscopy indentation experiments to determine the lateral membrane tension of planar PSMs.63,67 We asked the question how ENTH binding to these membranes alters their properties. Besides ENTH interaction, which was verified by fluorescently labelled ENTH, we also observed morphological changes of the protruded PSMs. Dependent on the lipid composition, the protrusions grew considerably owing to ENTH domain–membrane interaction, and/or disappeared. As the height of the protruded membranes is only governed by the lateral tension of the membrane (Fig. 6B) and the initial osmolarity gradient is constant, the only parameter that can explain an increase in height of the protrusions is a decrease in lateral membrane tension. That the protruded membranes disappear is probably a matter of the insertion of α0 of ENTH that forms defects in the membrane, so that the osmolarity gradient is cancelled and the membrane protrusion deflates resulting in the observed disappearance of the protrusion from the focal plane.
The notion, that in clathrin-mediated endocytosis various membrane curvature inducing proteins work not only consecutively but also in parallel displays the necessity to analyse cooperativity within this network. Currently, it is poorly understood how these proteins influence each other and how they are regulated. It will be exciting to see how future studies address the spatial and temporal fidelity of this complex network of proteins and lipids involved in CME.
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