Omar
López-Estrada
ab,
Jorge L.
Torres-Moreno
b,
Bernardo
Zuniga-Gutierrez
c,
Patrizia
Calaminici
b,
Sami
Malola
a,
Andreas M.
Köster
b and
Hannu
Häkkinen
*ad
aDepartment of Physics, Nanoscience Center, University of Jyväskylä, FI-40014 Jyväskylä, Finland
bDepartamento de Química, Cinvestav, Av. Instituto Politécnico Nacional, 2508, A.P. 14740, Ciudad de México 07000, Mexico
cDepartamento de Química, Universidad de Guadalajara, CUCEI, Blvd. Marcelino García Barragán 1421, C. P. 44430 Guadalajara, Jalisco, Mexico
dDepartment of Chemistry, Nanoscience Center, University of Jyväskylä, FI-40014 Jyväskylä, Finland. E-mail: hannu.j.hakkinen@jyu.fi
First published on 5th August 2022
Understanding the magnetic response of electrons in nanoclusters is essential to interpret their NMR spectra thereby providing guidelines for their synthesis towards various target applications. Here, we consider two copper hydride clusters that have applications in hydrogen storage and release under standard temperature and pressure. Through Born–Oppenheimer molecular dynamics simulations, we study dynamics effects and their contributions to the NMR peaks. Finally, we examine the electrons’ magnetic response to an applied external magnetic field using the gauge-including magnetically induced currents theory. Local diatropic currents are generated in both clusters but an interesting global diatropic current also appears. This diatropic current has contributions from three μ3-H hydrides and six Cu atoms that form a chain together with three S atoms from the closest ligands resulting in a higher shielding of these hydrides’ 1H NMR response. This explains the unusual upfield chemical shift compared to the common downfield shift in similarly coordinated hydrides both observed in previous experimental reports.
Indeed, NMR spectroscopy has been widely used to non-destructively characterize the reaction state, dynamic phenomena and the chemical environment around the constituent atoms of molecules, macromolecules, nanoparticles, proteins, etc.50 Furthermore, calculations of magnetic properties and their response towards perturbations from an applied external magnetic field have become routine.51 An applied external magnetic field, B, generates a response from the electrons in the system studied which is observed as a current composed of both diamagnetic and paramagnetic contributions in a plane perpendicular to B. This induced current flows in two directions relative to the external magnetic field: in a classical direction, that is clockwise or diatropic, and in a nonclassical direction, that is anticlockwise or paratropic (with directions determined by the right-hand screw rule). The strength of this current can then be related to the shielding/deshielding of the nuclei due to the magnetic field generated by these currents.
In the present work, we elucidate the nature of an unusual chemical shift observed in μn-H (n = 3–5) coordinated hydrides in Cu20H11(S2PH2)933 and Cu32H20(S2PH2)1252 complexes. The μ3-H is found capping the outer part of the clusters with a chemical shift of −0.99 (CDCl3, room T.), −0.55 ppm (Tol-d8, room T.) for Cu20H11(S2PH2)9 and −0.17 (CDCl3, room T.) −0.28 (CDCl3, −60 C) for Cu32H20(S2PH2)12 compared with similar μ3-H positions with chemical shifts of 1.3,14 2.10,41 2.74,43 3.51,4 and 3.5810 ppm. We perform asystematic analysis of the chemical bonding in these clusters, 1H NMR chemical shifts, dynamic effects on the Cu–μ3-H distances, and thermal contributions to the NMR peaks. Finally, we use our recent implementation of gauge-including magnetically induced currents (GIMIC)53,54 to analyse the diatropic and paratropic currents generated by the external magnetic field in the NMR probe. We observe a global diatropic current around a chain of six Cu atoms that form (111)-like facets but also a highly localized diatropic current around the μ3-H hydrides shielding for the nuclei and thus causing an upfield negative shift in the NMR spectrum.
Both model systems were optimized at the B88-P86/def2-TZVP level of theory as discussed in the computational details. To verify the local minimum, a vibrational analysis was performed for each system and the simulated infra-red absorption spectra for clusters 1 and 2 are shown in Fig. SI-1.† The normal modes for the hydrides in cluster 1 were observed in a narrow range between 905–968 cm−1 due to low coordination of the hydrides with the Cu atoms. Cluster 2 absorbs in a broader range of frequencies with vibrational normal modes between 831–1283 cm−1. The wider range is due to the wider variety of hydride coordination present in this cluster. The topological analysis of the density55 gives insight into the chemical bonding in the two copper hydrides (see Fig. SI-2†). Details of these calculations are given in the Computational section. The calculated bond paths shown in the density molecular graphs confirm the hydrides’ formal assigned coordination. This analysis also reveals that there are almost no copper–copper bond paths and, thus, no copper–copper bonding in these clusters. A remarkable exception is the central copper dimer bond in 1 (see Fig. SI-2†). To gain more qualitative insight into the chemical bonding in these systems, we calculated the density, ρ(rCP), and Laplacian of the density, ∇2ρ(rCP), at the Cu–H and Cu–Cu bond critical points, rCP. For all of these bonds,∇2ρ(rCP) > 0 holds, which excludes covalent bonding.56 The corresponding densities at these critical points are between 0.05 and 0.1 a.u., indicating weak metallic or ionic bonding. Of particular interest is the fact that in cluster 1, the ρ(rCP) for the central copper dimer is with 0.51 a.u. smaller than the ρ(rCP) for all Cu–H bonds. Thus, the weak metallic bonding between the copper atoms is the reason for the missing Cu–Cu bond paths. The copper hydride bonds are therefore essential for the cluster structures observed. This is experimentally confirmed by the fact that these clusters decompose under thermal hydrogen release.33,52
In agreement with previous experimental studies,33 we have identified three different types of hydrides for cluster 1 in a 3:2:6 ratio. Six μ3-H hydrides on triangular facets were obtained with an unusual upfield shift of −1.00 ppm (−1.52/PBE) with a deviation of 0.01–0.45 ppm (0.53–0.97 ppm/PBE) with respect to experimental values.33 These deviations depend on the functional and the basis set as well as the solvent used in experiments. Two hydrides μ4-Htr, each in a tetrahedral position inside the triangular cupola at the top and bottom, were identified with a downfield shift of 1.98 ppm (1.83 ppm/PBE) within 0.1–0.52 ppm (0.05–0.37 ppm/PBE) from experimental values reported.33 Three additional hydrides are shifted downfield with a μ4-Hsq position in the center of a slightly distorted square polygon formed by the two central Cu atoms and the vertices of the Cu shell. These hydrides exhibit a calculated downfield shift of 4.25 ppm (4.24 ppm/PBE) differing by 0.93–1.45 ppm (0.92–1.44 ppm/PBE) from experimental measurements. They are also more sensitive to the solvent where Tol-d8 produces a larger downfield shift than CDCl3. These shifts also show the largest difference between the experimental and DFT values. The larger difference is due to the calculations being performed in gas phase. We expect that further studies including the solvent effect, either explicitly or through an implicit solvent model, would improve the agreement between the computed and experimental 1H proton shifts but this is beyond the scope of this work.
For the copper hydride cluster 2, we identified the position of the twenty hydrides divided in five groups summarized in Table 2 in agreement with previous experimental reports.52 As in cluster 1, there are six μ3-H hydrides on triangular (111)-like facets, located on the triangular cupola at the top and bottom of the cluster, with similar unusual upfielded chemical shifts of 0.20, 0.34 ppm (−0.15, −0.3 ppm/PBE) in a 4:2 ratio with a deviation of 0.37–0.62 ppm (0.02–0.13 ppm/PBE) from experimental values. To compare two calculated chemical shifts with one experimental value, the deviation is given as the minimum and maximum difference between the two data sets. Both B88-P86 and PBE functionals showed upfield shifting, but only the PBE results were shifted to the negative part of the spectrum as observed experimentally. It is worth mentioning that both chemical shifts were measured shifted upfield independently of the temperature in CDCl3 solvent. We want to highlight this unusual behaviour and bring later the discussion on this μ3-H hydrides on 1 and 2 clusters.
A second set of six μ3-H1 hydrides was observed on triangular facets around the central rhombohedron of 14 Cu atoms. At room temperature, the experimental NMR showed only one peak at 0.92 ppm but when the temperature was decreased to −60 C, two peaks at 1.32 and 0.13 ppm were reported. We also observed two different values for these μ3-H1 positions, 2.27 and 1.44 ppm (2.12, 1.24 ppm/PBE) in a 4:2 ratio which deviate by 0.95–1.31 ppm (0.80–1.11 ppm/PBE) from experimental values at −60 °C and 0.52–1.35 ppm (0.32, 1.20 ppm/PBE) at room temperature. The effects of temperature on the chemical shifts for these hydrides is addressed later in the discussion. Each μ3-H1 hydride appears symmetric on alternating triangular facets around the rhombohedron pointing towards the top or bottom triangular cupola but always outside the cluster.
The tetrahedrally coordinated hydrides are divided into two groups, μ4-Htr and μ4-Htr1, based on their positions inside the cluster. The former are located in positions similar to those observed in cluster 1 with Cu tetrahedra in the triangular cupolas at the top and bottom of the cluster each containing one μ4-Htr hydride. The latter are located in four tetrahedra formed by the triangular cupolas and the rhombohedron and each tetrahedron contains one μ4-Htr1 hydride. The calculated chemical shifts for μ4-Htr hydrides are 5.27 ppm (5.11 ppm/PBE) with a deviation of 2.15–2.18 ppm (1.99–2.02 ppm/PBE) from experimental values, while the calculated chemical shifts for the μ4-Htr1 hydrides are 6.03 ppm (5.95 ppm/PBE) with a deviation of 1.33–2.04 ppm (1.25–1.96/PBE) from the experimental values.
The last two highly coordinated μ5-Hsp hydrides are each located in distorted square pyramids formed by Cu atoms from both triangular cupolas and the rhombohedron. Each hydride may be found near the center of the distorted square base. The μ5-Hsp hydrides have the largest downfield chemical shift at 8.76 ppm (8.68 ppm/PBE) with a deviation of 2.83–4.06 ppm (2.75–3.98 ppm/PBE) with respect to experimental values. A 2:4:2:6:6 ratio was observed between the hydrides of cluster 2, in good agreement with that previously reported.52
As the 1H NMR measurements were done at 20 and 30 °C for cluster 1, we performed the BOMD simulations at 300 K for this cluster. We followed the three characteristic distances, 1, 2 and 3, of one of the μ3-H hydrides with respect to each of the Cu atoms to which it is coordinated, as shown in Fig. 2. The 5 ps trajectory analysis showed longer 1 = 1.80 Å (σ1 = 0.12 Å) and shorter 2 = 1.69 Å (σ2 = 0.08 Å) bond lengths. The third characteristic distance, 3, has a value of 1.73 Å (σ1 = 0.08 Å). As can be seen from the color bar and histograms in Fig. 2, despite thermal fluctuations in the three different bond lengths, the deviation from the mean values is small, approximately 0.1 Å. All of these values are longer compared with previously reported experimental bond lengths33 for cluster 1 (1 = 1.60 ± 0.04, 2 = 1.72 ± 0.03 and 3 = 1.76 ± 0.04, Table SI-1†). The experimental data was collected at 100 K and our longer values are expected due to the higher dynamics at 300 K. Our values are also in good agreement with typical experimental bond lengths for μ3-H which are 1–7–1.9 Å.4,14,28
Fig. 2 Bond lengths analysis between a μ3-H hydride and its three coordinating neighbor Cu atoms for the BOMD trajectory during 10–15 ps for the cluster 1 at 300 K. |
For cluster 2, previous experimental 1H NMR measurements52 were done at −60 °C and room temperature. We selected three different temperatures (100, 200, 300 K) to perform the BOMD simulations. The simulations at 300 K showed severe structural distortions due to the elongated shape of the cluster 2 and the small S2PH2 model ligands. We therefore chose to focus our analysis on simulations at 100 and 200 K. The trajectory analysis for the μ3-H hydride at 100 K (Fig. SI-3†) showed two nearly equivalent bond lengths, 2 = 1.74 Å (σ2 = 0.03 Å) and 3 = 1.74 Å (σ3 = 0.02 Å), and a third shorter bond length, 1 = 1.67 Å (σ1 = 0.01 Å). At this temperature, the thermal fluctuations are almost negligible as shown in the color bar and histograms of Fig. SI-3.† Although the BOMD trajectories at 200 K (Fig. SI-6†) showed broader deviations from the mean values, the average bond lengths are consistent with their respective values at 100 K (Fig. SI-5†). Again, two equal bond lengths, 2 = 1.73 Å(σ2 = 0.1 Å) and 3 = 1.73 Å (σ3 = 0.09 Å), and a third shorter bond length, 1 = 1.69 Å(σ1 = 0.08 Å) were observed. We observe that the two equivalent distances are shorter and the third one longer compared to the corresponding distances at 100K. For cluster 2, the experimental values reported at 100 K (ref. 52) are 1 = 1.63 ± 0.04, 2 = 1.72 ± 0.03 and 3 = 1.78 ± 0.07 (Table SI-1†). Our values obtained from BOMD at 100 K are thus in good agreement with experiment.
For cluster 1, at 300 K, the small fluctuations in the bond lengths (0.08–0.12 Å) show a direct correlation between the shortening and lengthening of the three bond distances with the standard deviation in the chemical shifts of 0.96–1.16 ppm over time that can also occur in the experimental NMR setup. The average chemical shielding values are always shifted downfield with the μ4-Hsq hydride showing the highest downfield shift followed by the μ4-Htr hydride and the μ3-H . These results show that the ordering of the hydride chemical shifts is not altered by temperature effects and μ3-H is still observed with an average negative chemical shift.
For cluster 2, the standard deviations in the chemical shifts are smaller at lower temperatures, between 0.26–0.51 ppm (100 K), and larger, between 0.84–1.26 (200 K), at higher temperatures in good correspondence with the fluctuations in the three bond lengths observed in the trajectory analysis for both clusters. While the calculations at 0 K did not reproduce the negative chemical shift value observed for the μ3-H hydrides at the B88-P86/def2TZVP level of theory, once the thermal contributions are considered, the 1H chemical shift is moved further upfield to values of at 100K and at 200 K.
Interestingly, the chemical shift for the μ3-H1 hydride shows an average upfield chemical shift of at 100 K and a downfield chemical shift of at 200 K compared with the calculated results at 0 K. As previously discussed, at 0 K, the μ3-H1 hydrides give a signal in a ratio of 4:2 with a significant difference of 0.83 ppm between the peaks. This raises the possibility that thermal contributions average both upfield and downfield shifts during the trajectory.
The highly coordinated hydride positions did not show on average any significant change compared with the 0 K computations after including the thermal contributions, with μ4-Htr hydride , μ4-Htr1 hydride , μ5-Hsp hydride at 100 K and with μ4-Htr, μ4-Htr1, μ5-Hsp at 200 K (Table 3).
1 | 2 | |||
---|---|---|---|---|
Position | 300 K | Position | 100 K | 200 K |
μ3-H | −0.54 (1.02) | μ3-H | −0.09 (0.26) | −0.16 (0.95) |
μ4-Htr | 3.65 (0.96) | μ3-H1 | 1.33 (0.29) | 2.37 (0.84) |
μ4-Hsq | 5.66 (1.16) | μ4-Htr | 5.48 (0.29) | 5.10 (1.26) |
μ4-Htr1 | 6.42 (0.30) | 5.96 (1.03) | ||
μ5-Hsp | 8.67 (0.51) | 7.41 (1.07) |
1 | 2 | ||||||||
---|---|---|---|---|---|---|---|---|---|
z | r | Tot | Para | Dia | z | r | Tot | Para | Dia |
2.8 | 1.0 | −0.04 | 0.01 | −0.05 | 4.68 | 1.0 | −0.05 | 0.01 | −0.06 |
2.0 | −0.13 | 0.07 | −0.20 | 2.0 | −0.11 | 0.06 | −0.18 | ||
3.0 | −0.52 | 0.09 | −0.61 | 3.0 | −0.54 | 0.08 | −0.63 | ||
4.0 | −0.93 | 0.32 | −1.25 | 4.0 | −0.96 | 0.60 | −1.56 | ||
2.58 | 1.0 | −0.04 | 0.00 | −0.05 | 2.23 | 1.0 | −0.05 | 0.00 | −0.05 |
2.0 | −0.12 | 0.02 | −0.14 | 2.0 | −0.61 | 0.00 | −0.61 | ||
3.0 | −0.59 | 0.05 | −0.63 | 3.0 | −0.97 | 0.00 | −0.97 | ||
4.0 | −1.23 | 0.40 | −1.62 | 4.0 | −0.71 | 0.35 | −1.06 | ||
0 | 1.0 | −0.05 | 0.00 | −0.05 | 0.51 | 1.0 | −0.01 | 0.01 | −0.02 |
2.0 | −0.17 | 0.01 | −0.18 | 2.0 | −0.10 | 0.10 | −0.20 | ||
3.0 | −0.15 | 0.07 | −0.22 | 3.0 | −0.58 | 0.30 | −0.88 | ||
4.0 | 0.42 | 0.65 | −0.24 | 4.0 | −1.22 | 0.35 | −1.56 |
For the cluster 1 (Fig. 5a1), in the plane containing the three μ4-Hsq hydrides (z1 = 0.0 Å), they are embedded in global diatropic currents of −0.18 Å2 nA T−1 (r = 2.0 Å) and −0.22 Å2 nA T−1 (r = 3.0 Å) spread inside the core of the cluster thereby causing the high deshielding and thus the downfield shift in the NMR spectrum.
In the plane containing a μ4-Htr hydride (z3 = 2.8 Å), there are three localized paratropic contributions from the Cu atoms surrounding the hydride (Fig. 5a3). At r = 2.0 Å a global diatropic current of −0.20 Å2 nA T−1 is observed but a small current of 0.07 Å2 nA T−1 from the paratropic counterpart decreases the total current strength (Table 4). The downfield shift of this μ4-Htr inside the cluster compared with the μ3-H hydride is therefore expected due to the proton's deshielding.
Looking at the μ3-H hydrides in the z1 = 2.58 Å plane, we observed highly localized diatropic current contributions around each of them (Fig. 5a2) and a global total current of −0.59 (r = 3.0 Å) and −1.23 Å2 nA T−1 (r = 4.0 Å). This difference between the two radii is due to the high contributions of the localized diatropic currents around the hydrides. The localized diatropic areas are easily identified from their spacial representation on the plane containing the μ3-H hydride. The μ3-H hydrides are highly shielded because of the highly localized diatropic currents around them thus giving origin to the negative peak value in the NMR spectrum.
In cluster 2, we observed a global diatropic current surrounding the central part of the Cu core with highly localized paratropic current contributions (Fig. 5b1). In the plane (z1 = 0.51 Å) containing three of the six μ3-H1 hydrides, there is a local paratropic current effect closer to the two symmetrically equivalent μ3-H1 hydrides compared to the third μ3-H1 hydride. The location of the paratropic current explains the 4:2 ratio observed in the calculated NMR at 0 K. Although the total global contributions are very similar (−0.58 at r = 3.0 Å and −1.22 Å2 nA T−1 at r = 4.0 Å) to those observed for the μ3-H hydrides at z2 = 2.58 Å in cluster 1, the paratropic currents reduce the total shielding effect around these hydrides. The chemical shifts for these μ3-H1 positions are thus distinguished from the μ3-H at the cluster's extremities.
The z2 = 2.23 Å plane contains one μ5-Hsp and two μ4-Htr1 hydrides (Fig. 5b2). These hydrides inside the core of the Cu cluster have higher local diatropic contribution for μ4-Htr1 hydrides than for μ5-Hsp, with global diatropic currents of −0.61 Å2 nA T−1 spread in the plane within the area enclosed by r = 2.0 Å with completely negligible paratropic contributions. Then, the higher downfield shift of μ5-Hsp is understood due to the higher deshielding of these protons inside the cluster compared with μ4-Htr1 hydrides.
The last plane at z1 = 4.68 Å (Fig. 5b3) contains both μ4-Htr and μ3-H hydrides. The μ4-Htr hydride at the center is surrounded by localized paratropic currents causing a similar deshielding effect to that observed in cluster 1 thus producing an equivalent downfield shift in the 1H NMR peak. The highly localized diatropic currents around the μ3-H hydrides and the global diatropic currents contributions of −0.63 (r = 3.0 Å) and −1.56 Å2 nA T−1 (r = 4.0 Å) are also similar to the corresponding quantities in cluster 1. These μ3-H hydrides are therefore highly shielded as in cluster 1 because of the highly localized diatropic currents around them and thus show similar negative chemical shifts in the 1H NMR spectrum. The analysis of the magnetic induced currents is supported by the separation of the 1H chemical shieldings into diamagnetic and paramagnetic contributions. Most of the hydrides in clusters 1 and 2 have negative diamagnetic shifts that are smaller in absolute value than the corresponding positive paramagnetic shifts. For the μ3-H hydrides with overall negative chemical shifts, this relation is reversed due to the strong shielding from their local environment.
For the magnetic shielding tensor calculations, either of the optimized ground state structures or along the BOMD trajectories, the B88-P86/def2-TZVP/GEN-A2* or PBE67/aug-cc-pVDZ68,69/GEN-A2* methodologies were used. The latter has proven particularly accurate for hydrogen shift calculations.70 The 1H chemical shifts for the hydrides were referenced against the 1H chemical shift of TMS computed at the same level of theory. The magnetically induced current densities were computed employing our recent implementation53,54 of the electronic structure method for the gauge-including magnetically induced currents (GIMIC) theory.57 All computations were performed with the quantum chemistry code deMon2k.71
Footnote |
† Electronic supplementary information (ESI) available: Calculated IR spectra, molecular graphs, BOMD bond lengths analyses, BOMD 1H NMR chemical shifts. See DOI: https://doi.org/10.1039/d2nr02415b |
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