Ingolf
Harden
a,
Frank
Neese
a and
Giovanni
Bistoni
*ab
aMax-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm Platz 1, 45470 Mülheim an der Ruhr, Germany
bDepartment of Chemistry, Biology and Biotechnology, University of Perugia Via Elce di Sotto, 8, 06123 Perugia, Italy. E-mail: giovanni.bistoni@unipg.it
First published on 4th July 2022
We elucidate the stereo-controlling factors of the asymmetric intramolecular hydroalkoxylation of terminal olefins catalyzed by bulky Brønsted acids [Science2018, 359 (6383), 1501–1505] using high-level electronic structure methods. The catalyst–substrate interaction is described using a dispersion-driven induced-fit model, in which the conformational changes of the catalyst and of the substrate in the transition states are governed to a large extent by London dispersion forces. The distortion energy of the catalyst is dominated by the change in the intramolecular dispersion interactions, while intermolecular catalyst–substrate dispersion interactions are the major stabilizing contribution in the transition state. This model provides a new general framework in which to discuss the stereoselectivity of transformations catalyzed by such confined organocatalysts.
In biocatalysis, reactions occur inside structurally elaborate pockets within the enzyme active site, leading to high degrees of selectivity and activity.2 This stimulated chemists of all disciplines to develop synthetic hosts that emulate these natural biological pockets. As a prominent example, Yoshizawa et al.3 carried out Diels–Alder reactions of anthracene and phthalimide guests in confined aqueous organopalladium cage complexes, which led to unprecedented regioselectivity. Hastings et al. used the tetrahedral assembly K12Ga4L6 (L = 1,5-biscatecholamidenaphthalene) to catalyze Nazarov cyclizations within a confined space. This led to an increase of rate constants of six orders of magnitude,4 showing a catalytic activity that is also reminiscent of that of enzymes. Similarly, under heterogeneous conditions, reactions in confined zeolite spaces are also well-known for their high activity and selectivity.5,6 Notably, in the field of asymmetric organocatalysis, the List group developed a series of confined chiral Brønsted acids with enzyme-like activity and selectivity. These encompass imidodiphosphates (IDP),7–10 imino-imidodiphosphates (iIDP),11 and imidodiphosphorimidates (IDPi) Brønsted acids,12–15 differing in their acidity as well as in the shape of their active site. As a recent example, IDPi catalysts were used to catalyze asymmetric Mukaiyama aldolizations of silylenolethers with Benzaldehyde and it was suggested that the size of the catalyst pocket determines the benzaldehyde enantiofacial preference.16
Based on these findings, List and coworkers suggested that “confinement”, i.e., the shaping of the active site, should be regarded as a unifying element in selective catalysis.17 But how does confinement induce selectivity, and how this information can be used in the design of new catalysts? In biocatalysis, a complex pattern of interactions within the active site forces the substrates into specific orientations, thus favoring and/or disfavoring specific reaction pathways. A similar situation is expected to occur in any kind of selective catalysis, and harnessing the power of such interactions is one of the key challenges in contemporary chemical research.18 These interactions can be either covalent or noncovalent, either attractive or repulsive, depending on the nature of the substrates and of the catalytic system.
A ubiquitous interaction energy component that is commonly associated with the concept of confinement is “steric repulsion”, i.e., the short-range repulsion of atoms, molecules or functional groups. This interaction has often been advocated as the key factor controlling the stereoselectivity of a large number of chemical transformations.19–23 The key idea behind this assumption is that the introduction of bulky groups in a catalytic system can be used to block all the undesirable reaction pathways. However, the increase of catalytic activity that is often associated with confined reaction spaces is difficult to explain using steric repulsion alone,24 and in fact several recent works have emphasized the importance of attractive noncovalent interactions (NCIs) in this context.25,26
In contrast to steric repulsion, attractive NCIs are expected to influence the selectivity of a chemical process by lowering the energy barrier for specific reaction pathways, rather than by blocking those that are undesirable. Among the various types of NCIs, London dispersion (LD) has recently emerged for its ubiquitous importance in selective catalysis.27–36 This attractive interaction is always present between atoms, molecules or groups, irrespective of their nature. Its magnitude increases with the polarizability of the interacting species and decreases with their distance. Its fundamental role in stereoselective catalysis has been emphasized by the group of Schreiner on the Dakin–West reaction32 and the Corey–Bakshi–Shibata reduction.33 The group of Houk has demonstrated its importance for intramolecular Aldol reactions34 as well as in the dual transition metal catalysis of α-allylation reactions.35 In addition, Fürstner and coworkers used London dispersion as a key design element for confined Bismuth–Rhodium catalysts with improved activity and selectivity.36
Thus, steric repulsion and LD are two ubiquitous interaction energy components of opposite sign that increase in absolute terms with the internuclear distance, and hence are expected to play an especially important role in reactions occurring in confined spaces. Their interplay was recently investigated by our group on challenging stereoselective organocatalytic Diels–Alder reactions catalyzed by List's enzyme-like Brønsted acids,37 and it was found that both components must be considered for a thorough understanding of the stereo-controlling factors.
In this paper, we seek to reveal how increasing confinement quantitatively influences dispersion and steric repulsion, and how these energy components can in principle be harnessed to increase the selectivity of asymmetric transformations. As a case study, we consider the intramolecular hydroalkoxylation of unactivated alkenes published by the List group in 2018.38 The reaction conditions and the catalyst used are reported in Scheme 1. Remarkably enough, an in-depth analysis of the key stereo-controlling factors for this reaction is still missing.
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Scheme 1 Reaction and experimental conditions considered in this work. Details can be found in ref. 38. |
As initial guess structures for the transition states leading to the major and minor enantiomers, we used those computed by List and coworkers in their original work.38 Importantly, the stereo-controlling factors of this important transformation were not discussed in this work, and no extensive conformational sampling procedure was carried out for the relevant transition states.
In the first step of our protocol, an initial conformational sampling at the transition states was carried out using the Conformer–Rotamer Ensemble Sampling Tool45–47 (CREST) at the xTB-GFN1 and xTB-GFN2 levels of theory, as implemented in the Extended Tight-Binding Program Package48–50 (xTB). Due to the large number of conformers obtained from various sampling runs, the protocol defined in ref. 37 was slightly changed to reduce the computational time. Instead of performing DFT geometry optimizations for the entire structural ensemble (which consists of 6485 structures), the conformers were initially sorted in energy by means of DFT single point calculations. The Perdew–Burke–Ernzerhof (PBE) functional51 was used in conjunction with the Ahlrichs double-zeta def2-SVP basis set.52 Grimme's dispersion correction D3 (ref. 53) was used together with Becke–Johnson damping.54 To speed up the calculation, the resolution of identity55 in the Split-RJ variant56 was used together with the appropriate Coulomb-fitting basis set.57 This computational protocol is denoted hereafter as PBE-D3/def2-SVP.
The low energy candidate structures were included in the subsequent constrained geometry optimization step. In particular, a cutoff value of 4 kcal mol−1 was used for the relative electronic energies. In addition, to make the protocol more robust, higher-energy structures with significantly different structural features were also included. This step reduced the number of candidate transition state structures from 6485 to 655. Constrained geometry optimizations at the same level of theory were performed for all the 655 structures that survived the initial screening. The N–H bond distance was selected as only constraint. Tight DFT grids were used for the geometry optimizations (GRID6). The relative energies of the structures that lead to the desired products (459 conformers) are shown in Fig. 1.
![]() | ||
Fig. 1 Relative energy obtained from constrained PBE-D3/def2-SVP geometry optimizations leading to the major (black) and minor (red) enantiomeric product for the energetically favored concerted mechanism “A”. The transition state energies of the conformers originally discussed in ref. 38 at the same level of theory are shown in green to emphasize the importance of the conformer sampling procedure. |
Remarkably enough, this protocol identifies more than 100 transition state structures lower in energy than those originally discussed in ref. 38 at the same level of theory. Note that, as discussed in detail in ref. 37, the energy difference between the “constrained” and fully relaxed transition states is typically very small when meaningful constraints are defined.
The low-energy conformers with significantly different structural features were optimized without constraints using the larger def2-TZVP(-f) basis set. Thermochemical corrections were obtained at the same level of theory. Final single point energy calculations were carried out with the domain-based-local-pair-natural-orbitals coupled cluster method with single, double and perturbative triple excitations (DLPNO-CCSD(T))58–63 together with the def2-TZVP basis set. The corresponding correlation-fitting basis set (def2-TZVP/C) was used. The NormalPNO settings with a tightened TCutPairs value of 1 × 10−5 Hartree were used. In addition, the RIJCOSX approximation64 to the exchange integrals was used together with the matching Coulomb-fitting basis set. Tight Grids (GRIDX7) and very tight SCF settings (VerytightSCF) were used. Solvation corrections were included at the B3LYP-D3/def2-TZVP51,65–67 level of theory with the solvation model based on density (SMD).68 Cyclohexane (CyH) was used as solvent. The final Gibbs free energy was calculated via:
![]() | (1) |
For the analysis of the key non-covalent interactions, the local energy decomposition (LED)69–74 was used to decompose free energy reaction barriers ΔG‡ into contributions associated with the interaction of the catalyst and the substrate:
![]() | (2) |
In which represents the thermostatistical correction to the barrier, including all thermal corrections, entropic and solvent contributions.
is the geometric preparation energy, that is, the needed energy in order to distort the catalyst and the substrate from their equilibrium geometries to the geometries they have in the transition state.
represents the non-dispersive part of the interaction between the catalyst and the substrate, including all steric and polarization effects, while
denotes the London dispersion component of the interaction.
Steric maps were obtained with the SambVca 2.1 web tool.75 The protonated nitrogen atom of the catalyst was used as the center of the sphere with a radius of 7 Å. The 3D models are oriented in the same way as the steric maps, with the x-axis pointing to the right, the y-axis pointing upward and the z-axis pointing towards the reader. All distances in the steric maps are given in Å. The percentage of free volume within the sphere, % Vfree, is used in this work as a qualitative measure of “free” volume in the catalyst pocket that is accessible to the substrate.
For calculating the noncovalent interaction (NCI) plots, we used the NCIPLOT program.76–78 They were computed based on the electron density at the B3LYP-D3/def2-TZVP level of theory.
![]() | ||
Fig. 2 Computed mechanisms at the DLPNO-CCSD(T)/def2-TZVP level of theory. All energies are in kcal mol−1. See text for details. |
While the substrate–catalyst adducts A–E, B–E and C–E are all very close in energy, the different conformations of the substrate in these complexes lead to completely different reaction pathways. In the “concerted mechanism A”, the proton from the catalyst is transferred to the terminal methylene group of the folded substrate with simultaneous C–O bond formation, leading to the five-membered oxacycle in a single step. In contrast, the “step-wise mechanism C” involves the unfolded carbocationic species C–I as reaction intermediate. Finally, the “concerted mechanism B” pathway involves a hydrogen-bond assisted proton transfer from the O–H group of the folded substrate to the methylene group, with simultaneous C–O bond formation.
The comparison of the energy profiles associated with the three competing pathways indicates that the “concerted mechanism A” is preferred. As discussed in ref. 38, this pathway is consistent with the experimental observation that the non-terminal isomer of 1 does not react under the experimental conditions (both isomers would proceed through the same carbo-cationic intermediate within a step-wise mechanism).
For the “concerted mechanism A”, the lowest-in-energy transition states leading to the major and minor enantiomeric product are shown in Fig. 3.
It is important to emphasize here that, for the pathway leading to the major enantiomeric product, all the low-energy TS conformers show the same qualitative structural features. Hence, only the lowest in energy structure is shown in Fig. 3 (TS1-1). In contrast, for the minor enantiomeric pathway, two transition states with significantly different structural features and similar energies were identified (TS1-1′, TS1-2′). This aspect is discussed in more detail in the next section. The higher in energy TS conformers are given in the ESI.†
Consistent with the experimental findings, the pathway leading to the major enantiomeric product is energetically favored. However, the difference between the computed free energy barriers ΔΔG‡ associated with the major and minor pathways amounts to ca. 8 kcal mol−1, which is significantly larger than the experimentally determined value of 2.8 kcal mol−1. This deviation might have different origins, including the details of the chosen computational settings, such as the use of an implicit solvation scheme. Importantly, even though the use of different electronic structure methods, solvation schemes or basis sets influences the absolute magnitude of ΔΔG‡, it remains the case that TS1-1 is always more stable than TS-1′ and TS1-2′, irrespective of the computational settings used (see Table S3, ESI†). Importantly, extrapolation of the coupled cluster electronic energies to the complete basis set limit reduces the ΔΔG‡ by around 1 kcal mol−1, thus shifting the computed stereoselectivity closer to the experimental one (see Tables S5 and S6, ESI†). In the following, we will provide an in-depth, quantitative analysis of the physical and chemical origin of this energy difference, which will allow us to achieve a thorough understanding of the stereo-controlling factors of this transformation.
Our results show that the catalyst in its ground state is described by a closed and compact structure, which shields the active site. To enable interaction with the substrate 1, the catalyst pocket has to open up, which raises the catalyst energy with respect to its ground state of an amount that is expected to be roughly proportional to % Vfree. The “open” structure assumed by the catalyst in the transition state is shown in Fig. 4b for TS1-1 and Fig. 4c and d for TS1-1′ and TS1-2′, respectively.
In the transition states, the energy needed to distort the catalyst might be, at least partially, compensated by weak noncovalent interactions between the catalyst and the substrate upon adduct formation. Hence, a thorough understanding of the stereo-controlling factors in this and similar transformations can only be achieved through an in-depth quantitative understanding of both effects. The LED analysis is clearly an extremely useful tool in this context. The LED decomposition of the activation barriers ΔG‡ (eqn (2)) for the three pathways just discussed is shown in Table 1.
TS1-1 | TS1-1′ | TS1-2′ | TS1-1′-TS1-1 | TS1-2′-TS1-1 | |
---|---|---|---|---|---|
a Contribution associated with the catalyst distortion. b Contribution associated with the distortion of the substrate. | |||||
ΔG‡ | 20.0 | 28.1 | 28.4 | 8.1 (exp. 2.8)38 | 8.4 (exp. 2.8)38 |
![]() |
20.0 | 21.2 | 19.6 | 1.2 | −0.4 |
![]() |
50.5 (41.3a + 9.2b) | 56.6 (43.2a + 13.4b) | 63.6 (50.0a + 13.6b) | 6.1 (1.9a + 4.2b) | 13.1 (8.7a + 4.4b) |
![]() |
−38.2 | −43.2 | −45.4 | −5.0 | −7.2 |
![]() |
−12.2 | −6.5 | −9.5 | 5.7 | 2.8 |
The first important finding of this analysis is that the activation barrier for the pathway leading to the major enantiomeric product (ΔG‡ = 20.0 kcal mol−1) is identical in magnitude to the thermal and entropic contribution . This interesting effect originates from the fact that the increase in energy obtained when the catalyst structure is distorted from its ground state to the one that is optimal for interacting with the substrate (the dominant contribution in
) is entirely compensated by the energy gain due to attractive substrate–catalyst interactions. Importantly, London dispersion between the catalyst and the substrate is the dominant stabilizing factor in this case
, while non-dispersive interactions provide a relatively minor but still noticeable contribution
. In particular, there are strong dispersive interactions between the substrate and (i) both sulfonyl-groups of the catalyst, (ii) the aromatic rings of the aryl ligands and (iii) the tert-butyl groups of the pocket, as clearly shown via the DID plots69,80 in Fig. 3.
The pathways leading to the minor enantiomeric product show values of that are essentially identical to those obtained for the major pathway, while the overall free energy barriers are much larger. This effect originates from the fact that the
terms for the minor pathways are significantly larger compared to TS1-1. The interaction energy between the catalyst and the substrate is almost identical for TS1-1 and TS1-1′, while TS1-2′ features a stronger substrate–catalyst interaction, which partially compensates the corresponding increase in
.
Thus, the catalyst–substrate interaction mechanism should be described as an “induced-fit” model, in which both the substrate and the catalyst adopt the conformation and orientation that is optimal for the interaction. The major pathway is the one that minimizes the energy penalty associated with the distortion of the catalyst and of the substrate , while maximizing at the same time the catalyst–substrate interaction.
For the systems studied in this work, the distortion energy of the substrate correlates with the sp3-character of the methylene carbon atom. The factors contributing to the distortion energy of the catalyst, which is the dominant term in , are discussed in the next Section.
In order to understand the importance of individual groups or ligands, we performed a series of calculations in which we computed the catalyst contribution to for a series of subsystems (see the ESI† for details). These subsystems were obtained by sequentially substituting the groups of the catalyst 3b with hydrogen atoms. During these calculations, the catalyst geometry was not optimized, and only the positions of the newly added hydrogen atoms were relaxed.
The results of this study are shown in Fig. 5. In this figure, the subsystems are numbered from 3b_1 to 3b_5; denotes the difference between the catalyst contribution to
of the minor and major pathways.
Consistent with the results discussed in the previous section, is positive for the original catalyst 3b, which indicates that the increase in energy associated with the distortion of the catalyst within the induced fit model is smaller for TS1-1 than for TS1-1′ and TS1-2′. Interestingly, by progressively replacing bulky groups with hydrogen atoms,
becomes smaller and smaller. For TS1-1′, the largest effect is associated with the substitution of the phenyl rings of the aryl-ligands (3b_1 → 3b_2), while for TS1-2′ it stems from the substitution of the Ph-(CF3)2 group at the catalyst's amine group (3b_2 → 3b_3). In both cases, the substitution leads to a change in the sign of
.
For TS1-1′, the 3b_1 → 3b_2 substitution reduces by −4.0 kcal mol−1. About 50% of this energy change (−1.9 kcal mol−1) is associated with the corresponding change in the intra-catalyst dispersion forces (see ESI† for details). For TS1-2′, the 3b_2 → 3b_3 substitution reduces
by −5.3 kcal mol−1. Again, intra-catalyst dispersion provides a fundamental contribution (−5.0 kcal mol−1). Thus, within the induced-fit model, intra-catalyst dispersion forces play an especially important role in determining the selectivity of this transformation, as they are largely responsible for the magnitude of
.
To illustrate the origin of this effect, we show in Fig. 6 the NCI plots obtained for the intramolecular interaction of the backbone of catalyst 3b with either the Ph ring at the aryl ligand (Fig. 6a and b) or the Ph-(CF3)2 group (Fig. 6c and d) in the relevant transition states. These plots show that interactions that are strong and attractive in TS1-1 are essentially absent in TS1-1′ (Fig. 6b) and TS1-2′ (Fig. 6d).
Thus, for the major reaction pathway, the catalyst distortion associated with the interaction with the substrate does not disrupt the stabilizing Ph-⋯backbone or Ph-(CF3)2⋯backbone London dispersion interactions. In contrast, for each of the minor reaction pathways, some of the stabilizing intra-catalyst interactions are missing to facilitate the interaction with the substrate. In other words, only if the substrate and the catalyst are in the correct relative orientation (the one that leads to the formation of the major enantiomeric product) the energy penalty associated with the catalyst distortion can be minimized.
To summarize the results obtained so far, we have demonstrated that: (i) the energy required to distort the catalyst is a key factor controlling the selectivity of the transformation within an induced-fit model; (ii) this energy penalty is dominated by the change in the intra-catalyst dispersion interactions on going from the ground state of the catalyst to the structure that is optimal for the interaction with the substrate. Thus, a simple possible path towards rational catalyst design is the identification of confined catalysts that are largely stabilized by dispersion forces. This can be done by introducing bulky groups that act as dispersion energy donors,24,73,79 such as π systems, whose interaction with the catalyst backbone might or might not be disrupted upon the interaction with the substrate along specific reaction pathways.
In the next Section we will show how this simple argument can be used to rationalize catalyst selectivity in a series of previously published asymmetric transformations.
These results demonstrate that intra-catalyst dispersion forces are a fundamental factor contributing to the structural stability of these confined catalysts. In addition, as they are responsible for the magnitude of , they control to a large extent the selectivity of this transformation.
The experimental results were taken from ref. 38. Catalyst 3d showed almost no stereoselectivity (e.r. 63.5:
36.5), catalyst 3a is significantly more selective (e.r. 90.5
:
9.5), and catalyst 3b is the most selective (e.r. 97.5
:
2.5). Remarkably enough, analysis of the steric maps reveal that the catalyst selectivity does correlate with catalyst confinement as quantified by % Vfree. As expected, based on our previous analysis, the NCI plots also reveal an increase of stabilizing noncovalent interactions with increasing confinement, which fully supports our dispersion-based induced-fit model for these systems.
Footnote |
† Electronic supplementary information (ESI) available. See https://doi.org/10.1039/d2sc02274e |
This journal is © The Royal Society of Chemistry 2022 |