Takeshi Kai*a,
Tomohiro Toigawaa,
Yusuke Matsuyaab,
Yuho Hirataa,
Tomoya Tezukac,
Hidetsugu Tsuchidacd and
Akinari Yokoyae
aNuclear Science and Engineering Center, Japan Atomic Energy Agency, 2-4 Shirane Shirakata, Tokai-mura, Naka-gun, Ibaraki 319-1195, Japan
bFaculty of Health Sciences, Hokkaido University, Kita-12 Nishi-5, Kita-ku, Sapporo, Hokkaido 060-0812, Japan
cDepartment of Nuclear Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8530, Japan
dQuantum Science and Engineering Center, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan
eInstitute for Quantum Life Science, National Institutes for Quantum Science and Technology, 2-4 Shirane Shirakata, Tokai-mura, Naka-gun, Ibaraki 319-1195, Japan
First published on 1st March 2023
Many scientific insights into water radiolysis have been applied for developing life science, including radiation-induced phenomena, such as DNA damage and mutation induction or carcinogenesis. However, the generation mechanism of free radicals due to radiolysis remains to be fully understood. Consequently, we have encountered a crucial problem in that the initial yields connecting radiation physics to chemistry must be parameterized. We have been challenged in the development of a simulation tool that can unravel the initial free radical yields, from physical interaction by radiation. The presented code enables the first-principles calculation of low energy secondary electrons resulting from the ionization, in which the secondary electron dynamics are simulated while considering dominant collision and polarization effects in water. In this study, using this code, we predicted the yield ratio between ionization and electronic excitation from a delocalization distribution of secondary electrons. The simulation result presented a theoretical initial yield of hydrated electrons. In radiation physics, the initial yield predicted from parameter analysis of radiolysis experiments in radiation chemistry was successfully reproduced. Our simulation code helps realize a reasonable spatiotemporal connection from radiation physics to chemistry, which would contribute to providing new scientific insights for precise understanding of underlying mechanisms of DNA damage induction.
When water is irradiated with ionizing radiation, a large number of free radicals are generated nonhomogeneously along the radiation tracks. Generally, secondary electrons are produced by ionization (H2O˙+ + e−), and proton transfer is subsequently caused within 100 fs (ref. 7) (H3O+ + OH˙ + e−). The secondary electrons spread over a region of a few nm. As a result, electrons become delocalized around these parent cations. Hydrated electrons (eaq−) are formed in these delocalized distributions. After a few 100 fs, hydration of the secondary electrons progresses (H3O+ + OH˙ + eaq−).8–11 In addition, by the induction of electronic excitation, water molecules dissociate in mainly three types: (OH˙ + H˙), (O + H2), and (O + 2H˙).12 Oxidative damage to DNA is predicted from these findings of ionization and electronic excitation, however, reductive damage to DNA is still poorly understood.13 Since 2000, dissociative electron attachment (DEA) attracted attention as a new DNA damage process induced by low energy electrons.14 The induction produces negative dissociation products, such as (O˙− + H2), (OH− + H˙) and (H− + OH˙) in gaseous water.15 Recent studies found that the DEA is rarely induced in an aqueous solution.13 In this regard, the frequency of the DEA in aqueous solution seems to be different from that of the gaseous phase. Even nowadays, the reason for this remains unclear. The DEA is one of the reductive damages. Although this knowledge is still insufficient, its quantitative evaluation is much desired.
The yields of those radicals induced by ionization, electronic excitation, and DEA can be measured using various experimental techniques. Specifically, many experimental results of eaq− after a picosecond (ps) order through pulse radiolysis measurements have been reported.16–23 In terms of radiation chemistry, the initial yield (G value) of eaq− at 1 ps was predicted to be 4.15,17 4.4,18,19 4.9 (ref. 23) (1/100 eV), and the latest G value is evaluated to be 4.6 (ref. 20 and 21) (1/100 eV). These values were predicted from the experimental results after ps order with solving the Debye–Smoluchowski equation based on the diffusion theory considering coulombic interaction between the radicals.12,16,23
In general, the production of these free radicals can be simulated based on the track-structure Monte-Carlo code,1,24–33 such as KURBUC,1,24,25 TRACEL,26 RITRACKS,27 PARTRAC,28 Geant4-DNA,29 and PHITS.30,31 The track-structure Monte-Carlo code enables simulating ionizations, electronic excitations, and DEAs created by a primary electron and secondary electrons in liquid water. Here, the ionization, electronic excitation, and DEA coordinates are determined based on the Monte Carlo technique, and the type of free radicals, excluding the eaq−, can be determined because the general track-structure Monte-Carlo code (such as Geant4-DNA29) requires a cutoff energy, which is typically set to be about 7–10 eV. Thereafter, some empirical models based on experimental results for photoionization33,34 are generally used to obtain an ultimate delocalization distribution of secondary electrons. Consequently, the delocalization mechanism of the secondary electrons remains unexplained. A reasonable spatiotemporal connection from the physical process to a chemical process related to the generation of eaq− has not been realized.
In terms of radiation physics, we have developed a dynamic Monte Carlo code for physical process (hereinafter called dmcc_phys) to analyse the delocalization mechanism of secondary electrons and the generation mechanism of the eaq− in liquid water.35–40 The secondary electrons not only induce additional ionization and electronic excitation, but also become chemically active species as eaq−. Our code was developed by implementing a well-known molecular dynamics method in the track-structure Monte-Carlo code. Therefore, the motion of secondary electrons moving in the long-range coulombic field of the parent ions with the electron-water collision is solved by molecular dynamics method based on a Newtonian equation and a Monte-Carlo method based on probability theory of collision (see, Simulation method). This coulombic field is modified by the polarization effect. Therefore, this code includes the polarization effect in Newtonian equation (see, Simulation method). If we eliminate the molecular dynamics method from our code, our code is equal to the track-structure Monte-Carlo code. The electron track structure mode of PHITS,30,31 which corresponds to the track-structure Monte-Carlo code, was developed by eliminating the molecular dynamics method based on our code. Hence, our code achieves advanced first-principles calculations for the secondary electrons rather than the track-structure Monte-Carlo code. In the first-principles calculations, the six-dimensional degrees of freedom (position vector (x, y, z) and velocity vector (vx, vy, vz)) of the secondary electron vary from time to time along the molecular dynamics and Monte-Carlo methods. The code includes in collision and polarization effects originating from the molecular polarity of water to demonstrate the first-principles calculations for the secondary electrons. Here, the collision effect is the scattering and energy deposition of the electrons, and the polarization effect is the shielding of the electric field created by the cations produced in the water. It is thought that the collision effect of the secondary electrons moving in coulombic fields created by the cations correlates significantly with the polarization effect wherein some water molecules surround the secondary electrons or cations. This concerted correlation between the collision and polarization effects plays an important role in the delocalization of secondary electrons in water. Hence, we can expect to realize a simulation prediction of the G value of eaq−.
This study aims to explore the generation mechanism of the eaq− resulting from the water radiolysis by electron irradiation using a dynamic Monte Carlo code for the physical process. First, to verify our code, we calculated two types of ranges with different definitions in incident electron energies from 0.1 eV to 1 MeV and then compared the corresponding experimental and calculated results of previous studies. Second, we calculated yields with time evolution for ionization + electronic excitation and the DEA induced by an electron injection with 10 keV into water. Third, we explored the unknown concerted correlation in the order of fs from our results for delocalization, energy, and collision frequency distributions of the secondary electrons. Finally, throughout this paper, we discuss the prediction of the initial G value of eaq− from our calculated results.
To demonstrate the novelty of our method and results, we briefly describe the history of code development and improvements. We reported dmcc_phys in 2014.35 First, we used the cross-sections in gaseous phases.35 In 2015, we evaluated the intramolecular vibration excitation cross-section of liquid water and also calculated the intermolecular vibration and rotation excitation cross-sections of liquid water.36 We also calculated the ionization and electronic excitation cross-section of liquid water. For simulations of water radiolysis,40 we assumed that secondary electrons are ejected from water molecules if ionization (1b1, 3a1, 1b2, 2a1, and 1a1 ionizations) are induced. The initial energy of the secondary electron was sampled from the single-differential cross-sections of the gas phase.40
In this study, we improved a model of potential energy created by electrons or cations. We also evaluated the dielectric response of water by Fourier transform of a complex dielectric function. We provided energy to the electrons by induction of ionization and electronic excitations (A1B1, B1A1, Rydberg (A + B), Rydberg (C + D), diffuse band, and collective excitations). Here the ionized and excited electrons are collectively defined as the secondary electrons. To determine the initial energy of the secondary electrons, the deposition energy is sampled from the energy loss function.
When elastic scattering is induced, there is no energy change for the relative motions of an electron and a water molecule, but the energy for the motion of center-of-mass system changes.47,48 This phenomenon becomes effective in an extremely low energy region and is evaluated by the momentum transition cross-section σmom, which can be obtained from the differential cross-section q(θ) of elastic scattering.47,48
(1) |
(2) |
(3) |
(4) |
(5) |
As our code comprises the collision and dynamic algorithms, the motion of the electrons moving in the dynamic coulombic field created by the parent ion while colliding with water can be calculated. The coulombic field is shielded along the dielectric response (Fig. 1(b)), and we simulate hydration dynamics by the shielding. Although proton transfer occurs within 100 fs (ref. 7) (H3O+ + OH˙ + e−), the cations are fixed in the generation position. This is because the Born–Oppenheimer approximation50 allows electrons to follow the motion of protons. The number of calculation trials was adapted to reach a statistical uncertainty of much less than 1%.
Fig. 3 (a) Flowchart of typical track-structure Monte-Carlo codes.1,24–33 (b) Flowchart of dmcc_phys. |
The above calculations identify the location where ionization or electronic excitation is induced, and this information is used to identify the type of the free radicals produced. However, it is difficult to identify the location of the eaq−. Therefore, some models33,34 ware generally used when solving electron delocalization distribution for physicochemical processes. Here the positions of all radicals are obtained and the subsequent diffusion and reactions of the radicals are calculated by chemical code.12,16,22
Fig. 3(b) shows the flowchart of our code, where the inputs to our code are the number of trials (N), the primary electron energy (E), the cutoff time (tcut) of the calculation, and the time step Δt (1 attosecond). (2) In the dynamic algorithm, the dynamic behaviour of the primary and secondary electrons is simultaneously solved for each time step Δt according to eqn (5). (3) In the collision algorithm, electron water collisions are determined by eqn (3), and if a collision occurs, the electron energy loss ΔE and the number of generated electrons n2nd are obtained. The process (3) is repeated for the number of n2nd. After the process (3) is completed, we move on to the next time t = t + Δt. This process (2)–(5) is repeated until the cutoff time is reached. Once these calculations are complete, move on to the next trial J = J + 1 (process (6)). All calculations are completed when the statistical uncertainty of the results is sufficiently small. In our code, the calculated result depends on the cutoff time. Therefore, the calculated results include energy uncertainties.
Our code calculates electron deceleration, thermalization, delocalization, and initial hydration using first principles calculations. This identifies the location of eaq−, and we can challenge to evaluate the initial yield of hydrated electrons. Treatment of the free radicals other than eaq− and calculations for diffusion and reactions of the free radicals are the subject of future work.
As we have mentioned, water radiolysis is simulated in three stages: physical, physicochemical, and chemical processes. The physical process is the energy deposition into water by radiation, and calculates the position and yield of ionization and electronic excitation induced. Here, track-structure Monte-Carlo codes such as Geant4-DNA29 are used, and the flowchart is shown in Fig. 3(a). The cutoff energies of Geant4-DNA29 and a code reported by Pimblott et al.33 are 1–10 eV, and 5–25 eV, respectively. The physicochemical processes locate the various radicals based on ionization and electronic excitation information. For the position of eaq−, the models reported by Ritchie et al.,34 and Pimblott and LaVerne33 is generally used because track-structure Monte-Carlo codes do not calculate sufficient slowing down processes of secondary electrons. For chemical processes that calculate radical diffusion and reactions, independent reaction time, random reaction time, and step-by-step methods have been developed.12,16,22 Our dmcc_phys simulates the physical as well as physicochemical processes according to the flowchart shown in Fig. 3(b). When simulating an electron of 10 keV, the track-structure Monte-Carlo code completes the calculation in 15 seconds, while our code takes 8 minutes. The differences from typical track-structure Monte-Carlo codes are indicated in blue. The dmcc_phys does not set cutoff energy. The energy distribution of secondary electrons is set to asymptote to the Maxwellian of 300 K over time by the eqn (2). Therefore, it is necessary to set the cutoff time, which is set to 300 fs. There are also codes51 that use cutoff time, such as our code. While previous works12,16 deal with a variety of decomposition processes, the process treated in detail in this study is so far limited to ionization process (H3O+ + OH˙ + e−). Our dmcc_phys cannot simulate chemical processes, and therefore cannot be compared to chemical codes.12,16,22 We are currently developing an original chemical code (dynamic Monte Carlo code for chemical process or hereinafter called dmcc_chem), which is based on the step-by-step method.
Fig. 4(b) shows the calculated results of the ranges. Continuous slowing down approximation (CSDA) is defined as the sum of the distances between the positions of inelastic scattering induced along the primary electron track. Meanwhile, penetration is defined as a straight-line distance between the starting and ending points of the primary electron. Therefore, CSDA depends on the accuracy of the stopping powers and collision cross sections, while penetration depends on the accuracy of the scattering angle as well as the stopping powers and collision cross section. In the incident energies above 1 keV, the ranges calculated by dmcc_phys were in good agreement with the previous experimental and calculation results.51–55 In the energy below 1 keV, there are differences among these calculation results, but the trend is similar. The differences depend largely on the molecular excitation cross-sections and the setting of the cutoff energy. Our simulation results also showed a good agreement with the experimental results56 in an extremely low energy region around 1 eV. In this way, we verified the fundamental features of our code through intercomparison among our dmcc_phys code, other simulations, and the corresponding experimental data.
Fig. 5(b) shows the collision frequency distribution wherein the secondary electrons induce additional ionization, electronic excitation, and DEA during 300 fs. The horizontal axis indicates the distance from the parent ionic core. When the deposition energy exceed 20 eV, additional ionization and electronic excitation are induced by the secondary electrons. The deposition energy was sampling from the energy loss function shown in the Fig. 1(c). For the results of electronic excitation and ionization, the yields within 6 nm of the parent ion are mainly contributed by outer-shell ionization, while the yields above 6 nm are mainly contributed by about 500 eV Auger electrons generated by inner-shell ionization. The collision frequency of DEA is spatially spread because the process requires some deceleration of the generated secondary electrons. The DEA is rarely induced when the electron energy is about 7 eV. The ionization and electronic excitation are likely to be induced near the parent cations where the secondary electrons are generated, while the DEA is hardly induced near the parent cations. The rate induced within 1 nm of the cations was 36.8%, whereas that induced over 1 nm was 63.2%. These features provide us with a fundamental scientific insight for analysing the sites of DNA damage.40
Fig. 5(c) shows the calculated results of the delocalization distributions of the secondary electrons at 300 fs. The horizontal axis indicates the distance from the parent ionic core. We presented calculated results for time evolution of the delocalization distributions of secondary electrons at 1 keV electron in our previous paper.40 The calculated results did not include 6 processes of A1B1, B1A1, Rydberg (A + B), Rydberg (C + D), diffuse band, and collective excitations. In our previous work,40 it was found that a part of secondary electrons is recaptured into the parent ions even when the deposition energy exceeds the ionization energy (10.9 eV (ref. 49)) in the order of 100 fs. From the results with polarization and collision (red line), we found that the distributions are roughly divided into two regions. The distribution within a radius of 1 nm shows an exponential distribution, where electrons induced by deposition energy are strongly bound to the parent ion, and the distribution above a radius of 1 nm shows a Gaussian, where the electrons are in diffuse motion in the water. The region within 1 nm of the parent cation is mainly composed of the secondary electrons not only excited to the A1B1 and B1A1 states (excitation energy, 8.4 eV (ref. 26) and 10.1 eV (ref. 26)) of water molecules but also the electron recapture.40 Thus, the electron recapture within a few 100 fs plays an important role in determining the ratio between ionization and electronic excitation. The electron recapture will strongly depend on the polarization and collision effects. In the region over 1 nm, the delocalization distribution shows a maximum value of approximately 6 nm. Using the empirical formula,34 the maximum value is shown at about 20 nm when the energy of the electron is 7 eV (black line). From these results without phonon and orientation polarizations, the distribution strongly shifts to parent cations due to neglect of shielding of the coulombic forces created by the cations (light blue line). From these results with polarization and elastic scattering only, the secondary electrons are holistically distributed outward due to the neglect of the deceleration of the secondary electrons (blue line). From the comparison with and without the polarization and collision effects, these simulation results indicated that the concerted correlation between the polarization and collision effects plays an important role in the delocalization of secondary electrons.
Fig. 5(d) shows the calculated results of the energy distributions of the secondary electrons at 100, 200, and 300 fs. The horizontal axis indicates the kinetic energy of secondary elections. Our code is time-dependent, resulting in energy uncertainties at each time as shown in the figure. On the other hand, since the track-structure Monte-Carlo code is energy-dependent, the time uncertainties appear when the energy is determined. The energy components below 0.1 eV approach Maxwellian of 300 K after a few 100 fs, indicating the energy distribution of electrons in diffuse motion in water, while those above 0.1 eV indicate the energy distribution of electrons strongly bound to the parent ion. From the results in Fig. 4(a), the secondary electrons become thermalized at less than 800 fs, while the secondary electrons are gradually converted to eaq− in a few 100 fs.8–12 From this evidence, we suggest that the secondary electrons become epithermal electrons after a few 100 fs and gradually convert to eaq− without via thermal electrons.
After a few 100 fs or higher, an orientation polarization becomes dominant, hydration proceeds rapidly, and the dielectric response is completed in a few 10 ps as shown in the Fig. 1(b). The chemical reaction of the eaq− proceeds after a few 100 ps.17 The concentration of the radicals becomes homogeneous after a few 100 ns, and about 60% of the eaq− disappears after the chemical reactions after 1 μs.17 We should note that rate of solvated electron disappearance depends on not only time itself but also the concentration of chemical components. For example, the lifetime of the solvated electrons in ultrapure deoxygenated water at very small doses per pulse is long, and can be more than a few tens μs.
Hence, we also successfully verified our code from the viewpoint of the number of the secondary electrons. This verification clarifies both the accuracy of physical data as shown in the Fig. 1 and the validity of a model potential, including the polarization effects as shown in the Fig. 2. The G value for the DEA becomes a few percentage of eaq−. On the femtosecond order, OH˙ radical is produced mainly by the ionization process focused on in this study. Our predicted yield for this process is 4.16, as described above. But the radical is also produced via electronic excitation processes. Although many results for branching ratios of the excitation processes have been reported,12,26,32 a quantitative evaluation for branching ratios is our future work.
Fig. 6 shows an illustration of a summary of this study. When low energy around ionization energy 10.9 eV is deposited to water, electronic excitation would be induced, with induced electrons strongly bound to the parent ion. In this study, electronic excitation is determined when electrons are distributed within 1 nm of the parent ion (Fig. 5(c)). In this case, water molecules dissociate into various types of radicals. When high energy above ionization energy 10.9 eV is deposited to water, induced electrons will eject from the parent ion, and ionization will occur. In this study, ionization is determined when the electrons are separated from the parent ion by more than 1 nm (Fig. 5(c)). After the electron ejection, proton transfer occurs within 100 fs, and DEA is induced when the electron energy is about 7 eV at around 100 fs. The G value for the DEA (0.115) is a few percentage of the G value for ionization + electronic excitation (6.24) under the liquid water (Fig. 5(a)). The secondary electrons become epithermal electrons after a few 100 fs (Fig. 5(d)) and begin to change from the epithermal electrons to eaq− at about 6 nm from the parent cations (Fig. 5(c)). From the analysis of the delocalization distribution, the ratio of electronic excitation and ionization was 1:2 (Fig. 5(c)) at a few 100 fs, and the G value of eaq− was predicted to be 4.05.
Conventional track-structure Monte-Carlo simulations estimate the G value of each radical based on the cross-sections for the ionization and electronic excitation.1,24–33 Our results indicated that the dynamic motion of the secondary electrons must be further solved to predict the G value. Our follow-up study also focuses on developing the dmcc_chem in which can simulate the diffusion and reaction of the free radicals. By connecting dmcc_phys and dmcc_chem spatiotemporally, those codes enable realizing a more dense link between radiation physics and chemistry in the future. The link is expected to provide us with a much deeper understanding for unclear radical generation mechanism.
Although our work might contribute to other research fields, such as nuclear energy industry, we have intended to obtain water radiolysis aspects related to radiobiological effects for a decade. We reported many scientific insights especially for the role of secondary electrons in the water radiolysis. These must be an indispensable knowledge for understanding DNA damage formation as a starting point for radiobiological effects in our previous works.35–40 In turn, these insights can be applied to radiation chemistry research related to the nuclear fuel cycle.57 Radiation fields generated by the wide range of radioactive species contained in spent nuclear fuel are complex one containing low linear-energy-transfer (LET) radiation (β or γ rays) and high LET radiation (α rays).58 The high-LET radiation fields are densely ionized, and the dynamics algorithm of our code, which can simulate the effects of coulombic fields, will be essential to analyse the initial radiolytic process. Currently, we are developing the code only for electrons (low-LET radiation), but we believe that developing the code available for high-LET radiations such as α rays is one of the important issues in the future. Such code development for high-LET radiations (α rays and carbon ions) can provide new fundamental insights not only for the nuclear fuel cycle but also for particle therapy. But these should be performed in the future study.
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