Luuk J. G. W.
van Wilderen‡
a,
Daniela
Kern-Michler‡
a,
Carsten
Neumann‡
a,
Matiss
Reinfelds‡
b,
Jan
von Cosel
c,
Maximiliane
Horz
c,
Irene
Burghardt
c,
Alexander
Heckel
b and
Jens
Bredenbeck
*a
aJohann Wolfgang Goethe-University, Institute of Biophysics, Max-von-Laue-Str. 1, 60438 Frankfurt am Main, Germany. E-mail: bredenbeck@biophysik.uni-frankfurt.de
bJohann Wolfgang Goethe-University, Institute of Organic Chemistry and Chemical Biology, Max-von-Laue-Str. 7, 60438 Frankfurt am Main, Germany
cJohann Wolfgang Goethe-University, Institute of Physical and Theoretical Chemistry, Max-von-Laue-Str. 7, 60438 Frankfurt am Main, Germany
First published on 8th February 2023
Photocages are light-triggerable molecular moieties that can locally release a pre-determined leaving group (LG). Finding a suitable photocage for a particular application may be challenging, as the choice may be limited by for instance the optical or physicochemical properties of the system. Using more than one photocage to release different LGs in a reaction mixture may even be more difficult. In this work an experimental strategy is presented that allows us to hand-pick the release of different LGs, and to do so in any order. This is achieved by using isotopologue photocage–LG mixtures in combination with ultrafast VIbrationally Promoted Electronic Resonance (VIPER) excitation. The latter provides the required molecular selectivity simply by tuning the wavenumber of the used IR pulses to the resonance of a specific photocage isotopologue, as is demonstrated here for the para-hydroxyphenacyl (pHP) photocage. For spectroscopic convenience, we use isotopologues of the infrared (IR) spectroscopic marker –SCN as different LGs. Especially for applications where fast LG release is required, pHP is found to be an excellent candidate, as free LG formation is observed to occur with a 10 ps lifetime. The devised strategy may open up new complex uncaging applications, where multiple LGs can be formed locally on a short time scale and in any sequence.
We focus here on the small para-hydroxyphenacyl (pHP) photocage. As LGs different isotopologues of the –SCN moiety (see Scheme 1) are chosen for spectroscopic convenience, allowing us to directly detect the successful release of the LG of choice in the IR. The spectroscopic selection is based on (tunable) vibrational excitation, after which the selected photocage is electronically excited and its photochemistry is subsequently initiated. In the gas phase, related experiments (with IR excitation, subsequent UV/VIS excitation and e.g. ion or fluorescence detection) have been used to investigate photochemistry starting from defined and sometimes highly excited vibrational states,10,11 or to obtain the IR spectra of molecules in molecular beams.12
pHP is a photolabile protection group (PPG) well known for its high quantum yield and clean photochemistry in aqueous solutions.13–18 The irreversible uncaging mechanism (Scheme 1) after excitation to the S1 state in water consists of the formation of a triplet intermediate, the deprotonation of the phenolic head group (not shown), and consecutive Favorskii bond rearrangements. The latter leads to para-hydroxyphenyl acetate (pHPA) in the presence of water. The LG is already cleaved during the deprotonation step, but its release has not directly been observed so far in time-resolved spectroscopy.17–26pHP has been promoted as an alternative for the widely used o-nitrobenzyl derivatives. In addition to the much cleaner photoreaction that does not produce toxic byproducts, pHP cleavage is very fast (orders of magnitude faster) and therefore suitable for kinetic studies.27 The photoproduct has a blue-shifted absorption with respect to the starting material and is therefore not competing for excitation photons. The uncaging quantum yield is not strongly LG-dependent but is found to generally increase with decreasing pKa values.27
The applications of pHP as a PPG encompass neurobiology,17,28–35 enzyme catalysis, where fast uncaging is essential,17,27,34,36–38 biochemistry, such as in drug-delivery or the release of nucleobases, amines and NAD+,39–42 supramolecular chemistry,43 controlled etching of surfaces,44 and tissue engineering via hydrogel foams that can be used as scaffolds.45 There are currently ongoing efforts to increase the quantum yield of release of phenolic LGs such as the amino acid tyrosine.46 Extending the already vast application range for pHP further, it is shown here that even multiple simultaneously present pHP–SCN isotopologues can be used, which, in conjunction with VIPER, makes product release on demand from a desired pHP–LG combination feasible. SCN is chosen as the LG for demonstration because it is easily identifiable in the IR. First the uncaging of each individual pHP–SCN isotopologue is presented, after which the species-selective VIPER pulse sequence is applied to their mixture.
UV/VIS absorption spectra are collected with a JASCO V-670 spectrometer in a flow cell. The recorded FTIR and UV/VIS spectra with and without illumination are shown in Fig. S8.† In addition, the FTIR spectra of several structurally similar reference compounds are shown in Fig. S9.†
Ultrafast measurements are done using a Ti:sapphire regenerative amplifier (Spitfire XP, Spectra Physics) producing 3 mJ of 100 fs pulses at 800 nm and at 1 kHz. The Spitfire XP pumped three home-built OPAs. Signal and idler pulses of two OPAs generated in a BBO crystal are mixed in AgGaS2 to obtain mid-IR pump and probe pulses via difference frequency generation. The probe beam is split into two beams for referenced detection on a 2 × 32 pixel MCT detector (Infrared Associates) behind a spectrometer (Triax 180, Horiba) with a 150 l mm−1 grating. The focus size of both probe and reference IR beams in the sample is about 80 μm × 80 μm.
For resonant UV pump–IR probe measurements, the UV is generated via tripling of the Spitfire's fundamental to generate 266 nm (focus size 90 μm × 120 μm; 2 μJ per pulse; a few hundred femtoseconds long) and mechanically delayed and chopped at 500 Hz (Fig. S14†). The relative polarization is set to the magic angle with respect to the probe beam. The sample in the flow cell is continuously pumped around (1 ml total volume) to exchange the sample between laser shots and mechanically moved up and down to prevent the increase of scatter form the windows over time.
The narrowband IR pump pulses for the VIPER measurements are generated using a Fabry–Pérot interferometer (FWHM 22 cm−1; ∼0.2 μJ per pulse; focus size at the sample 110 μm × 120 μm) and mechanically delayed and chopped at 250 Hz. The overall chopping scheme is as described earlier.8 The flow cell is continuously translated as was done for the pump–probe experiments. Off-resonant UV pulses for VIPER excitation at 320 nm are generated by sum-frequency generation of the doubled fundamental and signal beams (UV focus size 145 μm × 125 μm). The UV pump (3.3 μJ per pulse) is blocked when the delay lines are moving to avoid unnecessary sample illumination. The polarizations of the beams are optimized for the VIPER signal size and set to 20° between the IR and UV pump pulses. The IR probe pulses are oriented parallel with respect to the UV pump pulse. The delay between the IR pump and UV pump is set to 1 ps to avoid pulse overlap. For all laser measurements the signal at −20 ps is subtracted as the background.
Fig. 1 Panel (A) shows the steady-state FTIR absorption spectrum of an unilluminated sample (about 30 mM in a CaF2 cell with a 50 μm Teflon spacer). Panel (B) shows the species-associated absorption difference spectra (SADS) of pHP–SCN after 320 nm excitation (100 mM; 50 μm spacer). The legend shows the associated time constants. Two additional components are needed to fit the coherent artefact around time zero (not shown). The signals in the SCN region have a different ordinate (shown to the right of the axis). Panel (C) compares the slowest SADS of panel (B) to a scaled FTIR light-induced difference spectrum (30 mM; 100 μm spacer). Fig. S11† reproduces the SADS with an added offset to the spectra below 1800 cm−1 for improved readability. Fig. S12 and S13† show raw spectra and time traces with fits and residuals. All data are collected using 1:8 D2O:MeCN as solvent. Data using 1:1 D2O:MeCN and their associated fits are shown in Fig. S14–S16.† |
Next, UV/VIS pump–IR probe data of pHP–SCN were collected in order to monitor the ultrafast cleavage reaction. To our knowledge, ultrafast release of the LG is directly observed for the first time. In Fig. 1 we show the global analysis (GA) of the data in a solvent mixture of D2O:MeCN (1:8), as water is required for the photoreaction. The resulting species-associated difference spectra (SADS) in Fig. 1B (see also Fig. S11B,† where each spectrum is plotted with an offset) show that the black spectrum decays with 5.5 ps to become the red spectrum. Its lifetime is consistent with intersystem crossing (ISC) from the singlet S1 to the triplet T1 state and will be referred to as τisc.20 Prominent spectral changes on this timescale are the disappearing positive feature from about 1520 cm−1 to 1565 cm−1 (see number 1 in Fig. 1B), assigned to a singlet ESA feature of one or more ring modes, and the upshift of the bound SCN's ESA around 2140 cm−1, assigned to vibrational cooling (number 2). The νCN mode of the free SCN ion absorbs around 2060 cm−1 and appears on a tens of ps timescale with τrelease (number 3), implying that the LG detaches from T1. The small amplitude at 2060 cm−1 in the red and black SADS shows the onset of the formation of free SCN ions already within a few ps.
The τrec = 19.8 ps lifetime (from blue to bright green) is associated with a disappearance of the ESA feature at 2140 cm−1 (number 4) and a small recovery of the bleach at 2160 cm−1, both pointing to ground state recovery of a fraction of the photo-excited molecules (with the LG still attached). The recovery is consistent with a decrease of the main bleach at 1602 cm−1 on the same time scale (number 5).
The next time constant (τphotoprod = 556 ps) is associated with pHPA photoproduct formation, as evident from the induced absorptions around 1720 cm−1, 1615 cm−1 and 1510 cm−1 in the purple spectrum (see the numbers 6 in Fig. 1B and C), which all show striking similarities with the absorption spectrum of pHPA (see Fig. S8C†). There is an additional induced feature around 1640 cm−1 (number 7) that might belong to an intermediate. The position would indicate that it is related to a carbonyl absorption, although it could also be an up-shifted ring mode. The bleaches in the long-lived SADS resemble those of the steady-state difference spectrum (see Fig. 1C) and indicate irreversible, successful photochemistry. A coarse estimate of the uncaging yield is about 20% (based on the relative signal amplitudes at early and late times at 1602 cm−1).
Our data are consistent with the literature on other pHP photocages,24,55 for instance that reported for pHP–diethyl phosphate (in H2O).24 For that compound τisc = 4 ps and τT1 = 60 ps are found, with LG cleavage occurring during triplet state formation. Although we cannot unambiguously assign the S1 and the T1 states in our data, the release of the SCN ion obviously occurs on a tens of ps time scale. The subsequent rate τphotoprod found here for pHPA product formation is also consistent with the literature and depends on the LG and water content (from μs in dry solvents down to about τphotoprod = 60 ps for the mentioned phosphate compound).24
Now, we apply VIPER to a mixture of codissolved isotopologues, by first tuning the IR pulse to be absorbed by (the ring modes of) the ring-labelled compound, as depicted by the blue Lorentzian pulse above Fig. 3A. The ring modes are chosen here, as they are theoretically predicted to show the largest VIPER effect54 for either isotopologue (see Fig. S18†). After the IR pump pulse, the UV pump pulse arrives at t1 = 1 ps (see Fig. 3C), followed by a broadband IR probe pulse after t2 = 100 ps. The first delay t1 is chosen to be longer than the duration of the IR pump pulse (∼0.7 ps), and the second delay t2 to be at a delay much longer than τrelease = 10 ps. The VIPER spectra in the rightmost panel of Fig. 3C clearly show that vibrational excitation of the blue ring-labelled compound only produces SCN features that are associated with the release of the unlabelled LG. Tuning the IR pulse now to the ring modes of the LG-labelled compound (schematically depicted in Fig. 3C by the vertical color-coded arrows in the schematic energy level diagram), uncaging is only observed from the LG-labelled compound (red). It is thus possible to select which LG will be released, even when structurally and spectroscopically similar molecules are present. In other words, in molecular mixtures where selective UV/VIS excitation is not possible, VIPER may still be able to activate one particular photoreaction or release the LG of choice. As the absolute size of the VIPER signals of pHP is comparably small, we had to tune the UV pulse to be relatively resonant (320 nm). On the one hand, this increases the VIPER signal (Fig. 3C) above our detection threshold, and on the other hand this increases the direct excitation signal (Fig. 3B), so that the VIPER/direct excitation ratio is 0.05 only. In spectroscopic applications, e.g. when monitoring the photochemistry after the selection of a species, the direct excitation itself is not a problem, because its contribution can be subtracted. In applications where purity in a chemical sense matters (e.g. when only the VIPER-selected molecules are to be isolated), direct unselective excitation is not desired and can be reduced by means of more off resonant excitation. Other ways to increase the VIPER/direct excitation contrast as well as the absolute size of the VIPER signal is to increase the IR pump energy, as the beam in our spectroscopy setup has an energy of ∼200 nJ per pulse only. Light sources that deliver 400 times more pulse energy per wavenumber are already available.56 A comparison of the kinetics for pHP after resonant UV/VIS excitation and VIPER excitation is currently challenging due to the small available VIPER signal sizes, but will be possible with the mentioned improvements in the future. However, even with the current setup we observed VIPER/direct excitation ratios > 20 for another molecule (coumarin 6, not shown) and VIPER signals in the mOD range. The ratio and the absolute VIPER signal size can thus be further optimized by selecting or designing molecules featuring a steep red edge of the UV/VIS spectrum and an optimized VIPER efficiency. A prerequisite of efficient VIPER excitation is that excitation of the IR mode strongly red-shifts the electronic absorption band. Such couplings and their mode dependencies have been predicted and demonstrated experimentally.54
VIPER excitation in general can be further enhanced by using already available stronger IR pump sources,56 as well as by designing photocages with enhanced VIPER efficiencies. Both of these measures will also improve the VIPER/direct excitation ratio.
The currently limited number of photoconverted molecules may already be characterizable with other methods (e.g. mass spectrometry), when a special sample cell is designed for retrieving only the VIPER-illuminated part of the sample. The obtained amount is already sufficient for microscopy applications57 or for the triggering of reactions in small sample volumes.
Our current study exploits the excitation of IR modes in a spectral region where aqueous solutions also absorb which is of particular importance for biological and biochemical applications. This complication can be overcome by the pumping and probing of IR transitions in a spectral region which has a low water background absorption, by using deuterated solvents which shift the solvent absorption modes away or using thinner samples. For application in aqueous solution, the design of photocages that feature VIPER-active IR modes in spectral regions with lower water absorption (such as nitriles and azides) is another possibility.
Challenges for VIPER excitation are similar to those of other non-linear excitation techniques such as two-photon uncaging,58 which is already routinely used in biological settings, and range from a limited number of pump photons, relatively low yields when compared to single photon excitation, raster scanning when larger amounts of sample need to be illuminated, to the need for specialized instrumentation.
The pHP–SCN photocage investigated here is especially suitable for time-resolved studies, as LG release is spectroscopically observed to take place with a 10 ps time constant.
By using the example of pHP, the ultrafast VIPER pulse sequence is shown to expand currently available uncaging strategies even further, for instance by applying VIPER to mixtures of identical photocages with different LGs. In that case having identified one suitable photocage for a system is already sufficient, and further tedious photocage-screening efforts can be omitted.
Footnotes |
† Electronic supplementary information (ESI) available: The ESI shows DFT computations of pHP–SCN, an extended uncaging reaction mechanism, global fitting results for different D2O:MeCN ratios, VIPER computations and steady-state spectra of the isotopologues. See DOI: https://doi.org/10.1039/d2sc06259c |
‡ These authors contributed equally. |
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