Efficient polyethylene terephthalate biodegradation by an engineered Ideonella sakaiensis PETase with a fixed substrate-binding W156 residue

Abstract

Ideonella sakaiensis PETase (IsPETase) is a unique polyethylene terephthalate (PET) hydrolase that displays great potential for mitigating PET waste at moderate temperatures. Although IsPETase exhibits greater specific activity towards PET, rapid activity loss limits its commercial application. Herein, semi-saturation mutation was carried out to stabilize the most flexible region in IsPETase and a thermostable S92P/D157A variant with a T_m value of 70.8 °C (ΔT_m = 24.1 °C) was constructed, which enabled a 109.3-fold increase in products released from amorphous PET depolymerization at 40 °C. The further depolymerization of untreated post-consumer PET obtained 17.34 mM products (95.0% TPA). The crystal structure indicated that the “wobbling” W156 residue in IsPETase^WT was fixed in the substrate-binding conformation in the S92P/D157A variant, which contributed to an increase in thermostability and could provide steady interaction with the substrate. Previous studies emphasized that the W156 residue exhibiting a “wobbling effect” is critical to substrate binding, while the different structure–function relationship of the S92P/D157A variant indicated that the wobbling of W156 may not be a pre-requisite for efficient PET biodegradation. Instead, engineering PET hydrolases for fixing the conserved W156 residue in the substrate-binding conformation was proposed. The S92P/D157A variant exhibited a preference for PET in the gauche conformation, which is consistent with its efficiency towards the degradation of low crystallinity PET, further cementing the importance of conformation selection and providing complementary evidence for the function of the fixed W156 residue in PET binding and catalytic processes. Collectively, our results could contribute to the understanding and engineering of more effective PET hydrolases, promoting the industrial application of the enzymatic PET recycling process.