Klara
Bangert
a,
Alexander
Swoboda
b,
Stephan
Vrabl
a,
Haris
Rudalija
c,
Mattia
Lazzarotto
c,
Stefan
Payer
c,
Anton
Glieder
d,
Christian A. M. R.
van Slagmaat
e,
Stefaan M. A.
De Wildeman
e and
Wolfgang
Kroutil
*afg
aDepartment of Chemistry, University of Graz, Heinrichstraße 28, 8010 Graz, Austria. E-mail: Wolfgang.Kroutil@uni-graz.at
bAustrian Centre of Industrial Biotechnology, c/o University of Graz, Heinrichstraße 28, 8010 Graz, Austria
cEnzyan Biocatalysis GmbH, Stiftingtalstrasse 14, 8010 Graz, Austria
dBisy GmbH, Wünschendorf 292, 8200 Hofstätten an der Raab, Austria
eB4Plastics BV, IQ-Parklaan2 A, 3650 Dilsen-Stokkem, Belgium
fBioTechMed Graz, 8010 Graz, Austria
gField of Excellence BioHealth, University of Graz, 8010 Graz, Austria
First published on 5th January 2024
Regio- and stereoselective functionalisation reactions like C–H oxidation are of high importance for instance for the valorization of renewables like fatty acids by α-hydroxylation. Here, peroxygenases were envisioned to be of high interest as they require common hydrogen peroxide as the only oxidant generating water as the sole side product. As the unspecific peroxygenase from Hypoxylon sp. (HspUPO) turned out to be not selective for α-hydroxylation, various bacterial peroxygenases from the CYP152 family were tested for the stereoselective α-hydroxylation of medium chain fatty acids (C6, C8, C10). The enzyme P450Exα proved to be highly suitable for the conversion of caproic acid (C6) (95% conv.) and showed high regioselectivity to give the α-hydroxylated product (α:
β-selectivity = 14
:
1). Additionally, P450Exα successfully converted the dicarboxylic acids azelaic acid (C9) and sebacic acid (C10) exclusively to the corresponding α-monohydroxylated product (up to >99% conversion). P450Spα hydroxylated the fatty acids C6, C8 and C10 preferentially in α-position giving the optically pure or optically enriched (S)-enantiomer [ee 95–>99% (S)] with up to 99% conversion. Both enzymes were used for preparative synthesis of α-hydroxylated fatty acids at up to 150 mM substrate concentration on 50 mL scale giving for instance 2-hydroxyoctanoic acid with 87% yield on gram scale (1260 mg) reaching TONs up to 42
000.
Using traditional chemical routes, functionalising saturated fatty acids bearing only a carboxylic acid group and many C–H bonds requires rather harsh conditions and is only moderately regioselective and not stereoselective, thus leading to the racemic product.16,17 Although enzymes/biocatalysts are known to work under mild conditions in buffer and display high regio- and stereoselectivity,18–21 C–H functionalisation is still a challenge. Typical enzymes for hydroxylation are P450 monooxygenases mediating e.g. the oxidation of aliphatic C–H bonds, aryl C–H bonds and CC double bonds with a high degree of chemo-, regio- and stereoselectivity.22–25 P450 peroxygenases and unspecific peroxygenases (UPOs) allow comparable oxy-functionalisation to P450 monooxygenases but are independent of reduced nicotinamide cofactors and electron transport chains, and rely on hydrogen peroxide as the only oxidant and source of oxygen.26–31 Hydrogen peroxide can be considered as a green reagent,32 as it is a stable oxidant and gives water as the only side product. The challenges with H2O2-driven biocatalysis are the inactivation of an enzyme at elevated peroxide concentration as amino acids may be oxidized,33,34 or the heme group itself gets degraded.35–37 Another challenge is the over-oxidation of desired products, like recently observed for the α-hydroxylation of fatty acids leading to α-keto acids,38 which are sensitive to decarboxylation in the presence of H2O2. Consequently, various approaches have been developed to generate the H2O2in situ to keep the H2O2 concentration low.39–45
Peroxygenases were mostly used for the hydroxylation of long chain fatty acids, and only few reports investigated medium chain fatty acids.10,11,35,38,46,47 Nevertheless, the global supply of medium chain fatty acids like caproic acid, caprylic acid and capric acid relies on oils like coconut, corn and palm oil48 and the global market of these medium chain fatty acids is expected to reach USD 2.03 Billion by 2028.49 Consequently, our focus here is the regioselective hydroxylation of medium chain fatty acids (C6:0, C8:0 and C10:0) to identify a suitable enzyme and a reaction protocol which can then be used on preparative scale and also for dicarboxylic acids.
Under the conditions employed, HspUPO converted caproic acid 1a with 39% conversion (Scheme 1). Thereby the (ω-1)-hydroxylated (ω-1)-2a and the β-hydroxylated product β-2a were detected in a ratio of 1.8:
1. Alpha-hydroxylation was not observed at all. The same is true for octanoic acid 1b, for which hydroxylation was primarily observed for the (ω-1)-position but also detected in the β-, γ-, and δ-positions. Also for capric acid 1c the main mono-hydroxylation product had the alcohol-moiety in (ω-1)-position, whereby hydroxylation was also observed in β- and α-position in a ratio of (ω-1)
:
β
:
α = 1.7
:
1.5
:
1. The incomplete mass balance detected for all three fatty acids by GC also indicated, that most likely also decarboxylation occurred, which fits to the observation, that the enzyme performed also β-hydroxylation.51 The observed preferred (ω-1)-hydroxylation for the UPO is also in line with a very recent report describing the improvement of the (ω-1)-preference by enzyme engineering of an UPO from another fungus (AaeUPO).27
![]() | ||
Scheme 1 Oxidative biotransformation of medium chain saturated fatty acids with HspUPO. Reactions were performed in 1.5 mL glass crimp vials. Reactions were analysed after derivatisation (BSTFA with 1% TMCS). Conversions [%] refer to the consumption of substrate and were determined by GC-MS using internal standard (ISD) in comparison to the sample at 0 hours. Ratios for mono-hydroxylated products were calculated based on GC-area (Fig. S9–S11†). Red circles illustrate that no α-hydroxylation was observed. |
Consequently, as the unspecific peroxygenase HspUPO was found to be indeed unspecific with respect to the position of hydroxylation of the fatty acids investigated and did not give α-hydroxylation in significant amounts, we turned our attention to peroxygenases from the CYP152 family, expecting them to show higher specificity for α-hydroxylation. Furthermore, we also considered to change the co-solvent MeCN, which is sometimes rated as not ideal in the solvent selection guides,52–54 due to supply volatility, difficulties in dealing with MeCN waste and poor scoring with regard to life cycle management.55 Consequently, biotransformations were performed using ethanol as an environmentally more preferable co-solvent.56
Biotransformations with P450CLA, P450Spα, P450Exα, CYP152K6 and P450Bsβ F79L/G290F showed successful conversion using 10 mM of substrate to the corresponding α-hydroxylated fatty acids (Table 1). Remarkably, P450Exα was found to be an excellent candidate for the conversion of 1a and exhibited good regioselectivity (14:
1) for the α-position over the β-position, giving 7 mM of α-2a and only 0.5 mM of β-2a. The natural substrate for P450Exα has been described to be myristic acid.59
Biocatalyst | FA | Conv.a [%] | Productsb [mM] | eeα![]() |
|
---|---|---|---|---|---|
CYP152 | α-OH | β-OH | |||
a Conversion [%] (i.e., consumption of substrate 1a–c) was determined by GC using an int. standard (lauric acid) after derivatisation (for GC traces see Fig. S12–14†). b Product concentrations were determined via calibration curves with an internal standard (Fig. S8†). The response factor for β-OH was assumed to be the same as for α-OH. n.d. not detected. c Optical purity was measured after derivatisation on GC using a chiral phase. d ee values in literature are 36% ee (S)-α-2b and 71% ee (S)-α-2c.35 e n.a. = not applicable due to no product formation. f (Z)-2-Hydroxyoct-2-enoic acid (7% and 8% GC-area) was detected by GC-MS. | |||||
P450CLA | 1a | 44 | 3.0 | n.d. | 8 (S) |
P450CLA | 1b | >99 | 6.5 | 1.5 | 48 (S)d |
P450CLA | 1c | 75 | 6.8 | n.d. | 62 (S)d |
P450Spα | 1a | 35 | 2.1 | n.d. | >99 (S) |
P450Spα | 1b | >99 | 8.9 | 0.4 | >99 (S) |
P450Spα | 1c | >99 | 8.5 | 0.6 | >99 (S) |
P450Exα | 1a | 95 | 7.0 | 0.5 | 81 (S) |
P450Exα | 1b | >99 | 4.0 | 3.6 | >99 (S) |
P450Exα | 1c | 96 | 2.9 | 4.0 | >99 (S) |
P450Jα | 1a | 11 | n.d. | n.d. | n.a.e |
P450Jα | 1b | 11 | n.d. | n.d. | n.a.e |
P450Jα | 1c | 24 | 0.5 | n.d. | n.a.e |
CYP152K6 | 1a | 73 | 5.3 | n.d. | 93 (S) |
CYP152K6f | 1b | >99 | 6.3 | 1.3 | >99 (S) |
CYP152K6 | 1c | 92 | 5.9 | 2.2 | >99 (S) |
P450Bsβ F79L/G290F | 1a | 50 | 2.8 | n.d. | 58 (S) |
P450Bsβ F79L/G290F![]() |
1b | >99 | 5.6 | 1.6 | 79 (S) |
P450Bsβ F79L/G290F | 1c | 38 | n.d. | 1.3 | n.a.e |
Furthermore, P450Spα reached completion for the conversion of 1b and 1c (>99% conv.) giving the corresponding α-hydroxylated products α-2b and α-2c with 8.9 mM and 8.5 mM, respectively. Only small amounts of β-hydroxylation product were detectable (β-2b and β-2c with 0.4 and 0.6 mM, respectively) corresponding to an α:
β ratio of 22
:
1 and 14
:
1, respectively. Incomplete mass balances are most likely due to undesired oxidative decarboxylation, which was in general not significant, except for P450Jα for which decarboxylation to the alkene has been reported before.47 Furthermore 1-alkene formation has been observed for P450CLA, P450Spα and P450Exα at elevated H2O2 concentrations.47,59 The enzyme CYP152K6 has been described as α-hydroxylase for substrates like lauric acid, tetradecanoic acid and palmitic acid.60 Nevertheless, our study showed that this biocatalyst exhibits also good regioselectivity for medium chain fatty acids leading in general to the α-hydroxylated product, whereby for 1a the α-product was detected exclusively without any β-product and in case of 1b and 1c, the ratios of α
:
β-hydroxylation were 4.8
:
1 and 2.7
:
1, respectively. The variant P450Bsβ F79L/G290F produced actually only α-2a, although at moderate conversion and low recovery, while the same enzyme gave only the β-product when transforming the C10 fatty acid 1c.
It is worth to mention, that for most enzymes and transformations no over-oxidation e.g. to the corresponding carbonyl compound, thus the α-keto acid, was detected which has been identified as a major issue in previous work.27,38 Only in the case of 1b with CYP52K6 and P450Bsβ F79L/G290F some α-keto acid was detected. The successful minimization/avoidance of the over-oxidation product can most likely be attributed to the continuous addition of the oxidant circumventing sudden high concentrations.
Analysing the chirality and optical purity of the α-hydroxylated products revealed that all six CYP152 enzymes investigated formed preferentially the (S)-enantiomer (Fig. S15–17†). Thereby the biocatalysts P450Spα, P450Exα and CYP152K6 gave access to optically pure (S)-products (>99% ee) in most cases. In contrast, α-hydroxylation by P450CLA was in general poorly enantioselective with ee values in the range of 8–62%.
From these results, P450Spα and P450Exα were chosen as the most suitable enzymes for α-hydroxylation, due to the high conversion, regio- and stereoselectivity and amounts of products achieved.
The substrate azelaic acid is produced by ozonolysis of oleic acid61,62 and sebacic acid is obtained by the alkaline cleavage of castor oil.63 The market for azelaic acid is expected to reach USD 1.6 billion by 202564 and USD 313 million by 2026 for sebacic acid.65 Both are building blocks of high interest for industrial applications66 due to their bio-based nature67 and biodegradability.68
Although one might expect that the dicarboxylic acids could be hydroxylated twice in the α-positions of the two carboxylic acid moieties, P450Exα successfully converted 3a and 3b exclusively to the corresponding mono-hydroxylated products α-4a and α-4b, the latter with >99% conv. (Scheme 2).
As shorter chain dicarboxylic acids like succinic acid 3c (C4) or adipic acid 3d (C6) were not converted by P450Exα and P450Spα (Fig. S21–24†), but the longer dicarboxylic acid 3a (C9) and 3b (C10) were converted, we initiated structural investigations in search of a potential explanation. Docking of the dicarboxylic acids C6, C9, C10 and the natural substrate myristic acid (C14) into the active site of P450Exα revealed the following (Fig. 1 and Fig. S24†).
![]() | ||
Fig. 1 Docking of dicarboxylic acids C6 (A), C9 (B), C10 (C) and carboxylic acid C14 (D) into the active site of P450Exα (PDB: 5YHJ) Docking studies were performed using YASARA and visualized with PyMOL. The docked substrates are visualized in pink in their lowest energy state. The simulation cell was defined at 4 Å around the iron atom of the heme. |
The computational modelling studies revealed that adipic acid (C6) (Fig. 1A) as well as succinic acid (C4) would be completely buried in the hydrophobic access channel. In contrast, the length of the hydrocarbon chains of 3a (C9) (Fig. 1B) and 3b (C10) (Fig. 1C) allowed for one of their carboxylic acid moieties to remain on the outside while they were tightly coordinated to the reaction centre like the natural substrate of P450Exα, myristic acid (C14) (Fig. 1D). Hence, it was presumed that the second carboxyl group of the longer chain dicarboxylic acids 3a and 3b did not lead to unfavourable interactions with the hydrophobic substrate tunnel and therefore to be converted. In contrast, for a transformation of e.g. succinic acid 3c (C4) or 3d (C6) also the second carboxylic acid moiety would need to be in the hydrophobic channel causing non-favoured interaction and therefore these substrates were not converted.
Entry | Substrate | Substrate [mM] | Enzyme | Total H2O2 [mM] | GC-MS conv.a [%] | Isolated yield [%]/purityb [%] | TONc |
---|---|---|---|---|---|---|---|
Reaction conditions: reactions were performed in a 250 mL reaction flask containing reaction buffer (100 mM KPi buffer, pH 7.4), EtOH (5% v/v), fatty acid (10, 50, 100 or 150 mM) and purified enzyme (3 μM), in a final volume of 50 mL (100 mL for entry 3 and 25 mL for entry 5). H2O2 was added continuously via a syringe pump [entries 1, 5 and 6: 1.6 mM h−1 over 12 h to a final concentration of 20 mM (stock: 320 mM); entries 2 and 7: 8.3 mM h−1 over 12 h to a final concentration of 100 mM (stock: 320 mM), entries 3 and 4: 12.5 mM h−1 over 12 h to a final concentration of 150 mM (stock: 400 mM). N.d. not determined.a Conversion was determined by GC-MS using lauric acid (5 mM) as ISD by comparison with a sample at t = 0.b Isolated yields [%] were calculated based on the measured mass [mg] of isolated and dried product and the maximum theoretical yields [mg]. Purity [%] was calculated based on GC-MS data.c TON = turnover number which is defined as mmol substrate converted per mmol catalyst.d Yield after second purification step.e α-2c 61% GC-area; β-2c and γ-2c product 26% GC-area and 9% GC-area, respectively. | |||||||
1 | 1b | 10 | P450Spα | 20 | >99 | 99 (80 mg)/>99 | 3333 |
2 | 1b | 50 | P450Spα | 100 | >99 | 89 (401 mg)/94 (6% β-2b) | 16![]() |
3 | 1b | 100 | P450Spα | 150 | >99 | 87 (1260 mg)/>99d | 33![]() |
4 | 1b | 150 | P450Spα | 150 | 90 | n.d. | 42![]() |
5 | 1c | 10 | P450Spα | 20 | 97e | n.d. | 3233 |
6 | 3b | 10 | P450Exα | 20 | >99 | 29 (26 mg)/>99 | 3333 |
7 | 3b | 50 | P450Exα | 100 | 25 | n.d. | 833 |
The hydroxylation of 1c on 25 mL scale resulted in α-2c as the main product (GC-MS yield of 61%) but also the β- and γ-products were detected via GC-MS (Table 2, entry 5).
Finally, dicarboxylic acid 3b was successfully converted to the mono-hydroxylated product α-4b (Table 2, entry 6) reaching a TON of 3333 under the conditions used. The lower yield (29%) was a result of the higher water solubility of the dicarboxylic acid and using the same work up procedure as for the mono-carboxylic acids.
Increasing the substrate concentration to 50 mM and using 100 mM of H2O2 indicated the limits of the used enzyme reaching 25% conv. (Table 2, entry 7).
Entry | Catalyst/reagents | Solvent/workup | Conc. 1b/scale | Yield [%] | Conv. [%] (ee) | TONe | Atom economyf [%] |
---|---|---|---|---|---|---|---|
a Purification by preparative thin-layer chromatography (SiO2, 20% ethyl acetate in hexane).
b Hydroxyperoxide product as side product.
c Intermediate in a cascade reaction.
d Over-oxidation to α-keto acid (2.89 mM).
e TON = turnover number which is defined as mmol substrate converted per mmol catalyst.
f ![]() ![]() |
|||||||
116 | LDA TMSOOTMS, H+ | THF/extraction with ethyl acetatea | 250 mM/10 mL | 44 | rac | n.a. | 34.4 |
217 | O2/LDA, HMPA | THF/crystallization | 200 mM/100 mL | 63b | rac | n.a. | 35.9 |
370 | Homogenate of peas/O2 | 0.2 M phosphate buffer | 0.2 mM/150 mL | Not isolated | <10 (99% R) | n.a. | n.a. |
438 | P450CLA/H2O2 (24 mM) | Kpi (pH 7.5, 100 mM) | 10 mM 1a/500 μL | Not isolated | 78.4 (36% S) | 1568 | 47.1g |
EtOH (5% v/v) | 5 mM α-2ad | ||||||
546 | P450CLA/H2O2 (20 mM) | Tris-HCl (pH 7.5, 100 mM) | 10 mM/1 mL | Not isolated | >99 (36% S) | 3333 | 89.9 |
EtOH (5% v/v) | >9.9 mM α-2b | ||||||
611 | P450CLA/H2O2 (20 mM) | Kpi (pH 7, 20 mM) | 10 mM/50 mL | >95 | >99 (36% S) | 1666 | 89.9 |
EtOH (5% v/v) | |||||||
710 | P450Spα/H2O2 (20 mM) | KPi (pH 7.4, 100 mM) | 10 mM/1 mL | Not isolatedc | 23 (>99% S) | 767 | 89.9 |
EtOH (10% v/v) | 2.3 mM α-2b | ||||||
8This work | P450Spα/H2O2 (up to 150 mM) | KPi (pH 7, 100 mM) | Up to 150 mM/50 mL | Up to >99% | Up to >99 (90->99% S) | Up to 42![]() |
89.9 |
EtOH (5% v/v)/acidification, extraction with ethyl acetate |
On the other hand, all biocatalytic approaches are performed in aqueous media requiring H2O2 as oxidation reagent, except for entry 3 (Table 3) where molecular oxygen was used with a homogenate of peas, representing a less well-defined reagent.
The CYP152 family offers high potential for regio- and stereoselective hydroxylation on medium chain fatty acids on preparative scale.
When comparing the two biocatalysts from the CYP152 family used for the α-hydroxylation of 1b (P450CLA and P450Spα) concerning stereoselectivity, P450Spα is superior as highly optically enriched product α-2b was obtained (96–99% ee), while P450CLA gave the α-hydroxy acid with an ee of 36% only (Table 3, entries 6, 7 versus 4–6).
Comparing the approach of this study P450Spα (Table 3, route 8) with all previous studies involving peroxygenases, it becomes clear that P450Spα can be used also at elevated substrate concentration (up to 150 mM), while previous studies used 2a at a maximum substrate concentration of 10 mM only. In comparison to route 7 where the hydroxy acid was not the main target, in our study α-2b was obtained with up to >99% conversion allowing to reach an outstanding TON and the product was isolated from a preparative scale experiment. An important key to success was the method of applying stoichiometric amounts of H2O2 continuously via a syringe pump. This turned out to be clearly superior to the previous approaches, where H2O2 was added at the beginning or was produced during the reaction.
Consequently, high conversions of 1b with P450Spα on 50 mL scale were achieved reaching TONs of up to 42000. So far, the highest turnover number (TON) for CYP152s in literature did not exceed a value of 3333.46 On small scale a TON of 3333 was reached for the conversion of 1b (10 mM) by P450CLA (3 μM). For pelargonic acid (C9:0) the reaction was conducted in 20 mM KPi buffer and yielded in 0.49 g product (>99% conv., 95% α-hydroxylated nonanoic acid, TON 3330) on 150 mL scale.11 Thus, the TON achieved here are one order of magnitude higher than reported before and are therefore the highest reported for a peroxygenase from the CYP152 family.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d3gc04593e |
This journal is © The Royal Society of Chemistry 2024 |