Tobias B. Tischera,
Zulema Fernándeza,
Lorenz Borsdorfa,
Constantin G. Daniliuca,
Shigehiro Yamaguchibc,
Soichiro Ogi*b and
Gustavo Fernández*a
aUniversität Münster, Organisch-Chemisches Institut, Corrensstraße 36, 48149 Münster, Germany. E-mail: fernandg@uni-muenster.de
bDepartment of Chemistry, Graduate School of Science, and Integrated Research Consortium on Chemical Science (IRCCS), Nagoya University, Furo, Chikusa, Nagoya 464-8602, Japan. E-mail: ogi.soichiro@chem.nagoya-u.ac.jp
cInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo, Chikusa, Nagoya 464-8601, Japan
First published on 4th November 2024
Supramolecular polymers are often investigated for highly symmetric and planar molecules, such as typically explored BF2-substituted BODIPY dyes. However, it is surprising that the possibility of desymmetrizing the sp3 hybridized boron centre of BODIPY dyes has remained unexplored in the context of supramolecular polymerization. Herein, we synthesized a new BODIPY derivative 2 with two different substituents at the boron (fluorine and phenyl), resulting in a system with two different π-surfaces, and analyzed its supramolecular polymerization in non-polar media. Notably, this symmetry reduction increases the complexity of the self-assembly by enabling the formation of an intermediate assembled state, which cannot be found in the symmetrical model BODIPY 1 with a BF2 group. Different experimental and theoretical studies suggest that significant steric effects together with multiple potential intermolecular stacking modes of the BODIPY dyes lead to discrete nanoparticle intermediates that ultimately transform into more-ordered H-type supramolecular polymers at lower temperatures. Our results introduce a new design strategy for controlled supramolecular polymerization.
Recently, we reported that also the slight out-of-plane distortion of the π-surface of a bis(difluoroboron)-1,2-bis((1H-pyrrol-2-yl)methylene)hydrazine (BOPHY) derivative leads to increased complexity in the supramolecular polymerization when compared to a structurally related but planar boron dipyrromethene (BODIPY) derivative.34,35 Although the oppositely oriented BF2 groups of the BOPHY core lead to a slight planarity breaking, both sides of the π-surface are identical in terms of steric features. This is due to the symmetry resulting from the sp2 hybridized carbon atoms that are included in the chromophores. To go beyond these systems, we aimed at designing self-assembling building blocks where the π-surface can be unsymmetrically functionalized orthogonal to the π-plane to yield a Janus-like π-surface. To address this goal, we exploited the planar BODIPY chromophore, as the sp3 hybridized boron atom allows the selective substitution of one of the fluorine atoms, thus enabling desymmetrization in the third dimension.
Starting from our symmetrical model BODIPY 1, we reduced the symmetry by removing the mirror plane aligned with the π-surface of the chromophore. This was achieved by replacement of a fluorine atom with a phenyl substituent at the boron atom to yield BODIPY derivative 2 (Scheme 1, for synthetic details see Fig. S1 in the ESI†). This molecular design enables a sterically more hindered surface on the phenyl-substituted side (P-surface) and a sterically less hindered side (F-surface, Scheme 1), which is expected to strongly influence the molecular stacking and self-assembly behaviour.
Scheme 1 Molecular structures of the model BODIPY derivative 1 with, C2-symmetry, its unsymmetrical analogue 2 and reference compound C. |
Fig. 1 Solvent-dependent UV-vis and emission studies (λexc. = λmax abs.) of 1 (a and c) and 2 (b and d) at c = 10 µM at room temperature. |
To gain further insights into the self-assembly process, variable temperature (VT)-UV-vis measurements were performed. Upon cooling a solution of 2 (c = 10 µM, 1 K min−1, MCH) from 363 K to 263 K, the absorption maximum shifts from 572 nm, corresponding to the monomeric species (2-M, red spectrum, Fig. 2a), to 538 nm, which can be associated with the H-type aggregate (2-H, blue spectrum, Fig. 2a). Furthermore, the red-shifted band at 616 nm that was previously observed in the solvent-dependent studies becomes apparent at lower temperatures (Fig. 2a). The H-type aggregate formation is independent of the cooling rate, indicating that the process is under thermodynamic control40–42 (Fig. S8†). Compared to 1 at the same concentration, the onset of the aggregation upon cooling starts at slightly lower temperatures. This effect results most probably from the increased steric hindrance that is introduced on the boron atom when a fluorine atom in 1 is replaced with a phenyl substituent in 2 (Fig. S9†). Upon heating aggregate 2-H (1 K min−1, MCH, blue spectrum, Fig. 2b), the monomer is recovered at 363 K. However, by comparing the degree of aggregation (αagg) of the cooling and heating processes at different temperatures (Fig. 2c), differences in the curve shape and a slight hysteresis are observed. A more detailed analysis of the cooling experiment shows that the absorption maximum of the monomer species of 2 shifts to shorter wavelengths at intermediate temperatures (298 K, green spectrum, Fig. 2a) without the appearance of a red-shifted shoulder at 616 nm. Furthermore, the bands at shorter wavelength (326 nm) corresponding to the absorption of the substituents at the 2- and 6-positions conjugated to the BODIPY core (Y in Scheme 1) remain unchanged. Only below a critical temperature (298 K, green spectrum, Fig. 2a) the red-shifted band appears rapidly (Fig. S10†) and the bands at short wavelength start to shift and split. These findings suggest the occurrence of an intermediate state (2-I, λmax = 546 nm) that transforms into the final H-type aggregate (2-H) after surpassing a concentration-dependent critical temperature (Fig. S10†). The shift from the monomeric species towards 2-I occurs without a clear isosbestic point, while the transformation from 2-I to 2-H exhibits an isosbestic point at 542 nm. The two-step transformation from 2-M to 2-H via 2-I can be visualized rather well when the degree of aggregation is plotted e.g. at the isosbestic point between the intermediate and the aggregate (542 nm, Fig. 2d). At high temperatures, when mainly monomers are present, the degree of aggregation remains nearly zero between 363 K and ca. 336 K. Below this temperature (336 K), the formation of 2-I sets in, as indicated by the increase of αagg until a plateau is reached at around 298 K. Below this temperature, the proportion of 2-H increases but no change in αagg is observed due to the characteristics of the isosbestic point. This analysis was carried out for different concentrations to obtain a phase diagram (Fig. 2e and Fig. S11†) that reveals the general trends of the aggregation process. Increasing the concentration results in an increased onset temperature for the formation of 2-I as well as for 2-H.
In order to understand the disassembly of the aggregate, corresponding heating experiments were carried out (Fig. 2b). The studies reveal that the disassembly of 2-H to the monomeric species occurs more gradually than in the cooling experiments. Nevertheless, an intermediate species 2-I* with an absorption maximum at λmax = 546 nm (similar to 2-I) can be observed. However, in stark contrast to 2-I, the red-shifted shoulder at 616 nm as well as the bands at around 300 nm resemble the spectral features of the aggregate, rather than those of the monomer. We assume that the cooperative effect in the transformation from 2-I to 2-H in the cooling process (Fig. S10a†) is caused by additional interactions of the side groups, most probably hydrogen bonds. This stabilization process does not allow to revert the intermediate 2-I in the heating process but enables the formation of another intermediate species with interactions between the side groups. This results in a slightly more disturbed disassembly process, requiring higher temperatures.
Interestingly, the fact that reference compound 1 does not form any intermediate species (Fig. S12†) demonstrates that the replacement of the fluorine atom in 1 with a phenyl group in 2 has a direct consequence on the observed self-assembly behaviour. We propose that repulsive steric interactions involving the phenyl group at the boron atom initially hinder close contacts of the BODIPY chromophores, resulting in species 2-I with weak exciton coupling. Below a certain temperature, cooperative effects come into play and overcome the repulsive steric interactions, leading to the formation of the final aggregate 2-H. To investigate the stability of 2-I, time-dependent studies were performed. Unexpectedly, species 2-I did not transform into aggregate 2-H over several hours, demonstrating its thermodynamic stability (Fig. S13†). Therefore, we assume that 2-I is a kinetically trapped off-pathway aggregate that forms via an anti-cooperative mechanism, analogous to previous literature reports.43 Only below a certain critical temperature, the formation of 2-H occurs via a cooperative pathway, indicated by the rapidly rising band at 616 nm (Fig. S10a†). This transformation could be fitted well to the nucleation–elongation model to obtain the thermodynamic parameters (Fig. S10a and Table S1†).44 However, these data need to be taken with caution, as the process involves additional intermediate species that are not considered in the model. The anti-cooperative formation of 2-I would explain the high stability of this species. Due to the favoured nucleation,2 the monomer concentration is reduced, hindering the transformation to the thermodynamic aggregate via the monomer. Unfortunately, the curves describing the transformation from the monomer to 2-I cannot be fitted to any suitable thermodynamic model, as this process cannot be isolated from the transformation to 2-H at any wavelength (Fig. S10b†).
To prove the assumption of two competitive pathways, we investigated the morphology of 2 in the intermediate state and compared it to that of the final aggregate state 2-H. To this end, we prepared solutions of 2-I (MCH, 20 µM, 310 K) and 2-H (MCH, 20 µM, 273 K), spin-coated them on highly ordered pyrolytic graphite (HOPG) and analysed the samples through atomic force microscopy (AFM). 2-I formed small particles with a uniform size of ca. 4 to 12 nm (Fig. 2g and Fig. S20†). According to the size, this suggests the formation of discrete assemblies comprising a limited number of molecules. The aggregate 2-H, however, shows elongated fibres (Fig. 2h and Fig. S21†) with a uniform width of 8 nm and several micrometres in length. These results corroborate the assumed pathway complexity, as the small particles of 2-I suggest an anti-cooperative mechanism and the elongated structures of 2-H are typical for aggregates that formed via a cooperative mechanism. Furthermore, the formation of well-structured, fibre-like H-type aggregates points out the drastic consequences of small structural changes in a molecular design, as they can lead to distinct pathways with different morphology. Despite 1 and 2 having similar spectral patterns for their respective aggregates, 1 was reported to form short worm-like structures,39 while 2 self-assembles into much more extended fibres.
The increased steric hindrance of 2 compared to 1 prompted us to perform quenching experiments to rationalize whether other kinetic species may potentially be involved in the self-assembly process. Therefore, thermal (Fig. S14†) and solvophobic quenching experiments (Fig. 2f) were performed. For the solvophobic quenching, a monomeric solution of 2 (CHCl3, c = 200 µM, 273 K, 100 µL) was prepared and rapidly diluted with cold MCH (273 K, 3900 µL) to gain a 10 µM solution that was subsequently tracked by UV-vis spectroscopy. These experiments demonstrate that the spectral features of the quenched solution resemble those of 2-H that were observed in the cooling experiments (λmax. = 540 nm). However, the formation of the typical red-shifted shoulder of 2-H around 616 nm cannot be observed, indicating a similar but less ordered self-assembly compared to 2-H. Nevertheless, this solution transforms over time into 2-H, as evident by the emergence of the shoulder at 616 nm (Fig. S14a†). Similar observations were made for the thermally quenched solution (MCH, 10 µM, 273 K, Fig. S14b and c†). In contrast to the findings for 2, compound 1 does not show any significant differences in the spectral features upon thermal and solvophobic quenching (Fig. S15†), once again highlighting that the additional phenyl group of 2 plays an important role in the observed behaviour.
The decreased symmetry of the π-surface of 2 makes it challenging to predict the relative arrangement of the molecules upon aggregation. Commonly studied BODIPY dyes with a BF2 group, such as 1, are well known to stack in an antiparallel fashion both in solution and the solid state, where both sides of the π-surface have similar chemical environments due to the C2-symmetry of these molecules45,46 (Fig. 3a). However, this scenario changes when the C2-symmetry is disrupted and two different π-surfaces emerge, as it is the case for 2 (the P- and the F-side, Scheme 1). On this basis, three different kinds of dimer stacks are conceivable (Fig. 3b and c): either both phenyl substituents (P/P) or both fluorine atoms (F/F) are on the same interacting side of the molecules, or they are on different sides (F/P). These three types of dimers may theoretically be able to combine in different ways to build larger aggregates, including potentially unordered structures. To represent the three different packing options, we crystallized the precursor molecule C (Fig. 3b, Fig. S22† and Scheme 1), which features a fluorine and a phenyl substituent on the boron, and iodine atoms instead of substituents Y at the 2- and 6-positions, from a dichloromethane solution. Intriguingly, in the crystal structure of C, two different types of dimers that could potentially form in a nucleation process for supramolecular polymerization can be observed: the sterically least favoured one (P/P, Fig. 3b, blue frame) along with the sterically most favoured (F/F, Fig. 3b, red frame). The last potential dimer packing that can occur (F/P) would lie in between the P/P and F/F in terms of steric effects. Although this packing is not found in the crystal structure, it likely exists in solution given that it is sterically more favoured than the P/P packing (Fig. 3c).
To examine the intermolecular interactions, we studied the different species 2-H and 2-I with different NMR and FT-IR techniques. For the investigation of the aggregate 2-H, we first performed VT-1H-NMR experiments (MCH-d14, 1 mM, Fig. 4c). The formation of 2-H is accompanied by a high-field shift of the methyl protons of the BODIPY dye at the meso (violet) and at the 3- and 5-positions (light green), indicating the formation of π–π interactions. The methyl groups at the 1- and 7-positions (light blue) show only weak shifts, which can be explained by a merely weak participation in intermolecular interactions. Furthermore, a low-field shift of the amide protons (dark blue) is observed upon cooling. This can be associated with the formation of hydrogen bonds. At lower temperatures, the signals broaden and finally vanish due to the ongoing aggregation. To gain further information about the participation of hydrogen bonds, we performed FT-IR measurements in CHCl3 and MCH to compare the monomeric with the aggregated state (Fig. 4a and b). We found, that the carbonyl stretching shifts from νCO = 1676 cm−1 in CHCl3 to νCO = 1644 cm−1 in MCH, demonstrating a change in the chemical environment. Likewise, the N–H vibration shifts to lower wavenumbers when moving from CHCl3 (νN–H = 3431 cm−1) to MCH (νN–H = 3280 cm−1). These results are in good accordance with the formation of amide-amide N–H⋯OC hydrogen bonds.40,47 Interestingly, by comparing these results with reference BODIPY 1, we found that the CO and N–H stretching bands of 2-H are shifted to lower wavenumbers compared to the aggregate of 1 (ΔνN–H(MCH) = 40 cm−1, ΔνCO(MCH) = 13 cm−1), which can be traced back to stronger hydrogen bonds in 2-H despite an increased steric hindrance in 2. 2D-ROESY- and HOESY-NMR studies were carried out at elevated temperatures to obtain better resolution of the signals in the aggregated state (Fig. 4d). In the 1H–1H-ROESY-NMR, a clear correlation was found between the meso methyl group and the methyl groups at the 3- and 5-positions from the BODIPY, indicating an antiparallel and slightly offset packing of the BODIPY dyes. This kind of interaction was already expected from the low-field shift of the corresponding proton signals from VT-1H-NMR experiments. The antiparallel packing is supported by correlations between the methyl groups at the 1- and 7-positions and the phenyl substituent (Fig. S17a†) at the boron position as well as with the fluorine atom, visible in the 1H–19F-HOESY spectrum (Fig. 4e). Also, the appearance of two signals for the alkoxy OCH2 methylene signal (orange) with a 2:1 ratio in the VT-NMR experiments can be explained by ROESY-NMR. Here, a coupling of four out of six alkoxy methylene groups of the chains with the aromatic protons of the terminal phenyl ring (black) is observed, indicating a slight translational offset of the molecules (cartoon in Fig. 4f and Fig. S17b†).
For the investigation of 2-I, the experimental conditions had to be optimized to identify the intermediate species. Hence, we carried out NMR and FT-IR experiments at a concentration of 0.5 mM, as it allowed us to correlate our results with UV-vis experiments. VT-UV-vis experiments revealed that 2-I can be isolated at 333 K (Fig. S16†). Below this temperature, the formation of 2-H was observed, similar to the previous experiments at lower concentrations. This also correlates with the results of VT-1H-NMR (Fig. S18†). Here, a signal broadening was noticed below 333 K, which is expected for the formation of extended aggregates. The VT-1H-NMR shows similar characteristics compared to the higher concentrated solution (Fig. 4). FT-IR experiments (MCH, 0.5 mM, 333 K) were conducted to gain more information about the hydrogen bonds (Fig. 4a). The CO vibration (νCO = 1683 cm−1) appears at nearly identical wavenumbers compared to the monomeric species in chloroform (1 mM, νCO = 1676 cm−1), but shows a more pronounced broadening. The N–H vibration splits into two bands: a stretch that correspond to free N–H groups (νN–H = 3442 cm−1) and a band at lower wavenumbers (νN–H = 3349 cm−1) that indicates weak hydrogen bonding between the molecules. We therefore conclude that the formation of 2-I is driven by π–π interactions and rather diffuse and weak hydrogen bonds that do not include the carbonyl groups. The weak coordination of the amide groups goes in line with the lack of exciton coupling of the Y substituents that was observed in the UV-vis experiments (Fig. 2a). In 2D-ROESY experiments, however, we could find similar interactions in 2-I and 2-H that imply similar packings of the molecules (Fig. S19†). Nevertheless, the absence of strong hydrogen bonds in 2-I indicates that the formation of 2-H requires a rearrangement of the molecules, e.g. via the monomer.
To ultimately rationalize the packing and the preferred contact sides between the neighbouring molecules (F/F, P/P or F/P contacts) in 2-H, we performed theoretical calculations. Previous NMR experiments do not allow to distinguish between the stacking possibilities due to the intrinsically similar interactions of the neighbouring molecules in the proposed packings. Hence, DFT (B3LYP/6-31G(d,p)) calculations were employed to optimize the monomer and compare the three proposed dimers. The dodecyloxy side chains at the peripheral phenyl rings were replaced with methoxy groups to reduce the computational costs. Subsequently, we performed calculations on the F/F, P/P and F/P dimers (Fig. S23†). From the optimized structure, it becomes evident that the P/P stacking is the energetically least favoured stacking (ΔG = +29.851 kJ mol−1). Due to the steric repulsion, only one amide group is involved in hydrogen bonds and the BODIPY chromophores only overlap slightly. The situation changes for the F/P and the F/F dimers. Both exhibit hydrogen bonds between each of the amide groups and both are well stabilized. The free Gibbs energy favours the F/P assembly by 11.673 kJ mol−1 when compared to the F/F packing. Accordingly, we infer that the formation of F/P interactions in the supramolecular polymer 2-H is the most probable scenario. However, given the similar stability of these two packings, we hypothesize that the competition between these two packing modes might be responsible for the observed pathway complexity.
Footnote |
† Electronic supplementary information (ESI) available. CCDC 2386585. For ESI and crystallographic data in CIF or other electronic format see DOI: https://doi.org/10.1039/d4qo01848f |
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