Mohsen Abbaspour*a,
Hamed Akbarzadehb,
Sirous Salemia,
Somayeh Mazloomi-Moghadama and
Parnian Yousefic
aDep. of Chemistry, Hakim Sabzevari University, Sabzevar, Iran. E-mail: m.abbaspour@hsu.ac.ir
bDep. of Physical Chemistry, Faculty of Chemistry, Kharazmi University, Tehran, Iran
cDep. of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
First published on 15th October 2024
In this work, we simulated water molecules confined in carbon, boron nitride (BN), and silicon carbide (SiC) nanotubes with similar sizes. We also simulated water molecules confined between parallel graphene, BN, and SiC surfaces in two cases: (a) a similar geometric surface density of water of 0.177/Å2, in which the number of gas molecules was 18% of the total water molecules, and (b) a similar density profile of water of 0.04–0.05 dalton per Å3. To examine H2 hydrate formation, we added guest H2 molecules to the confined water molecules in the nanotube and surface systems. We analyzed the formed shapes, adsorption energies, radial distribution functions (RDFs), and self-diffusion coefficients of the confined molecules in gas hydrate formation. Our results showed that a more ordered heptagonal ice nanotube was formed in the BN nanotube than that in the other systems. After the addition of H2 molecules in the different nanotubes, some of the H2 molecules occupied the wall of the ice nanotube and some of them positioned in the hollow space. Although gas hydrates were created in all surface systems, ordered gas hydrate shapes were formed only in the graphene system. The adsorption energy for guest H2 molecules between the different surfaces was negative, which means that the formation of H2 hydrates between these surfaces is a spontaneous process (unlike that in the nanotube systems). According to RDF results, the BN nanotube and graphene surfaces are proper systems to form more ordered H2 hydrate structures. The confined water molecules have much higher diffusion coefficients in the BN nanotube and graphene surfaces than in the other systems. The F4 parameter also substantiated hydrate formation in the different nanostructures. In a new configuration of BN and SiC systems with density profiles similar to that of the graphene system, the H2 hydrate was not formed completely as in the case of the graphene system. H2 hydrates formed in the new BN and SiC surfaces were less than those formed in the primary structures (with a geometrical density similar to that of the graphene system) and the graphene system.
The mechanism of formation of bulk hydrogen clathrates is still less understood because of the very long computational time required in molecular dynamics (MD) simulations and the imprecise monitoring of time and spatial domains of the crystallization process in the laboratory.8 Furthermore, the nanoscale environment allows spontaneous formation of some low-dimensional ice and gas clathrate structures.9–11 Moreover, the knowledge of transport of gases and their physiochemical interactions in nanoscales help us to design more efficient methods for gas storage processes at the nanopores.12 Among different nanopores, carbon nanotubes (CNTs) have attracted much attention among scientists in recent years because of their interesting physical properties and significant potential applications such as gas clathrate formation.12,13 Recently, Zhao et al.1 have investigated the H2 hydrate formation in different CNTs and reported that the confined H2 molecules in the gas clathrates formed a molecular wire. We have also recently studied methane clathrate formation in different CNTs and demonstrated that the water molecules are replaced by the gas molecules in the ice nanotubes.14 More recently, we have studied methane clathrate formation in different fullerenes and found that the formation of methane hydrate in fullerene is favorable.15
In this work, we initially modelled confined water molecules in different nanotubes. After that, we added guest H2 molecules in the nanotubes to examine the formation of gas clathrates. We also examined the H2 hydrate formation between different surfaces. We also examined different properties including adsorption energy, radial distribution function (RDF) and self-diffusion coefficients of the confined molecules during the gas hydrate formation.
In the second part, we initially simulated 210 water molecules confined between fixed parallel graphene surfaces (with parallelogram shape) with dimensions of 35.3 and 36.7 Å and an interlayer distance of 8 Å (a fixed geometric volume of 9137.55 Å3). Then, we simulated 210 water molecules and 38H2 molecules confined between the graphene plates. The number of water molecules was chosen as 17.7/nm2 of the surface, according to the work by Bai and Zeng.11 The number of gas molecules was chosen as 18% of the total water molecules. The systems were initially equilibrated at T = 1000 K to overcome the initial arrangements and then subjected to an instant quench at T = 230 K. Then, the systems experienced incremental step annealing and reheating cycles (230 → 235 → 240 → 245 → 250 → 245 → 240 → 235 → 230 K) for which each incremental step takes 1 ns. Then, the systems were equilibrated for 10 ns at 230 K and then 10 ns at 250 K. Finally, all systems were equilibrated for 10 ns at 270 K. The simulations for pure water and the water + gas mixture between the graphene plates were also repeated for parallel BN and SiC surfaces with similar geometrical dimensions and interlayer distances, i.e. a surface density water of 0.177/Å2 in which the number of gas molecules was 18% of the total water molecules. The snapshots of all nanotubes and surfaces used in this work are presented in Fig. S1 in the ESI.† We also investigated the hydrate formation in BN and SiC surfaces at similar density profiles of the graphene surfaces (and not in the similar geometrical density), i.e. at a density of 0.04–0.05 dalton per Å3. In order to do this, we increased the distance between the BN and SiC surfaces (because of a larger atomic diameter of N and Si than that of C) and repeated the simulations with similar numbers of water and H2 molecules.
All of the simulations were performed in the NVT ensemble and a Nosé–Hoover thermostat was used with a relaxation time of 0.1 ps. We used the DL_POLY software17 with the Verlet leapfrog algorithm with a time step of 1 fs. For electrostatic interactions, we used the Ewald summation technique. The cutoff distance was 12 Å. Periodic boundary conditions were applied in all three directions. To avoid artificial influence from periodic images, the nanotubes and plates were positioned at the center of a simple orthorhombic box with vacuum on both sides separating it from the next periodic image in the Z direction.
The SPC/E and TIP5P models were used for the confined water molecules in the nanotube and surface systems, respectively (according to the previous simulations on gas hydrates11,13). Hydrogen molecules were modelled by a rigid two center 12–6 Lennard-Jones (LJ) potential with a bond length of 0.074 nm and parameters of εH = 0.1039 kJ mol−1 and σH = 0.259 nm.18 The 12–6 LJ parameters for B, N, and Si atoms were from ref. 19. The 12–6 LJ parameters for all the heterogeneous interactions were obtained by utilizing the geometric mean for ε and the arithmetic mean for σ.20 Bai et al.11 have successfully simulated methane hydrates between graphene surfaces using the TIP5P model for water and the 12–6 LJ model for methane. They also used the 9–3 LJ potential for the gas–wall and water–wall interactions. Thus, we used the 9–3 LJ model for water–surface and gas–surface interactions. In order to do this, we fitted the 12–6 LJ model to the 9–3 LJ model for gas and water with different wall interactions (Fig. S2 in the ESI†). The water–carbon interaction was also computed by the 9–3 LJ model (σ = 2.4737 Å and ε = 1.2024 kcal mol−1).11
Fig. 1 Ice nanotube formed in the different nanotubes with similar sizes. The oxygen atoms are shown in red color and hydrogen atoms in white. |
After addition of 18H2 molecules in the different nanotubes containing 126 water molecules, some of the H2 molecules occupied the wall of the ice nanotube and some of them were positioned in the hollow space (Fig. 2). It is shown that the number of the H2 molecules in the hollow space is more for the BN nanotube. This is due to the fact that the stronger water–wall interactions do not allow the guest H2 molecules to replace the water molecules in the wall of the ice tube. It is also shown that the heptagonal structure of ice nanotube disappeared for the CNT and SiC nanotubes but not for the BN nanotube, which is also due to the stronger water–BN interactions than the other interactions. After addition of 36H2 molecules in the different nanotubes containing 108 water molecules, most of H2 molecules occupied the hollow space, so that there were not any water molecules in the middle space in the CNT and BN nanotube, whereas the reverse trend was observed for the SiC nanotube in which most of the H2 molecules were positioned in the ice nanotube wall (Fig. 2). Another interesting phenomenon is the near-complete cylinder shape, which was formed for the SiC nanotube. Previous investigations showed that the gas–water (ice) nanotube interactions play significant roles in the structure of the created gas hydrates.21 Duo to the competition between the gas–nanotube wall interactions and the hydrogen bond (HB) network in the ice nanotube. The confined water molecules try to keep the HB network in the ice nanotube, but the H2 gas molecules reduce the number of the HBs between the confined water molecules.13
Fig. 2 H2 clathrate formed in the different nanotubes. The oxygen atoms are shown in red color, hydrogen atoms in white, and hydrogen molecules in violet. |
The role of guest H2 molecules in the confined space of the nanotubes is to compete with water molecules which interact with each other by hydrogen bonding (HB). Therefore, the guest gas molecules affect the structure of the water molecules and their HB network, which result in a longer distance between the confined water molecules.13 To deeply investigate the structural properties of the confined molecules during the H2 hydrate formation, it is better to compute the RDFs between the oxygen atoms of the confined water molecules using the following equation:22
(1) |
According to Fig. 3, the first peaks of water–water and water–methane RDFs for the BN nanotube appear at longer distances than the CNT and the SiC nanotube for both 126 and 108 water molecule systems. Moreover, those peaks of the CNT appear at longer distances than those of the SiC nanotube. This result relates to the fact that the BN nanotube and CNT are better systems for H2 hydrate structure formation than the SiC nanotube (the BN nanotube is the best).13 The gas hydrate structure has a more ordered structure than the gas–water mixture without formation of gas hydrates, in which the distance between the water molecules (and also gas molecules) increases, and therefore, the water–water RDF appears at larger distances. To more examine these results, for instance, we calculated the adsorption energies of 18H2 molecules into 126 water molecules in different nanotubes using the following equation:
(2) |
According to eqn (2), the adsorption energy for the BN nanotube was 3.33 (kcal mol−1), for the CNT was 10.726 (kcal mol−1), and for the SiC nanotube was 51.637 (kcal mol−1) per hydrogen molecule. These results indicate that the adsorption energy for guest H2 molecules is positive, which is in agreement with the results obtained by Zhao et al.,1 in which they reported that the interaction energy between two H2 molecules and the ice nanotube (with 128 water molecules) is positive. The results also indicate that the BN system is more favorable than the other systems for gas hydrate formation (it is less positive).
To examine the dynamical behavior of the confined water molecules during the gas hydrate formation, we calculated the self-diffusion coefficients using the mean square displacement (MSD) from the following formula22 using the modified VMD software:23
(3) |
System | D (10−9 m2 s−1) |
---|---|
126H2O | |
CNT | 0.0051 |
BN | 0.0070 |
SiC | 0.0055 |
126H2O + 18H2 | |
CNT | 0.0044 |
BN | 0.0289 |
SiC | 0.0096 |
We also calculated the MSD curves of the confined H2 molecules in the different nanotubes, and they are presented in Fig. S3 in the ESI.† Similarly to the confined water molecules, this figure shows that the confined H2 molecules have a greater diffusion coefficient in the BN nanotube than in the other nanotubes.
Fig. 4 Ice and H2 clathrate structures formed between different surface systems. The oxygen atoms are shown in red color, hydrogen atoms in white, and H2 molecules in blue. |
We present the water–water and water–gas RDFs for the confined molecules in the different surface systems in Fig. 5. It is shown that the first peaks of water–water and water–methane RDFs for graphene surfaces appear at longer distances than the BN and SiC surfaces. Moreover, those peaks of the BN nanotube appear at longer distances than those of the SiC nanotube. Therefore, the graphene surfaces are better systems for H2 hydrate formation than the SiC and BN. This result is in agreement with Fig. 4, in which we observe that the ordered gas hydrate shapes are formed only for the graphene system. To better examine these results, we also calculated the adsorption energies of 38H2 molecules into 210 water molecules in different systems. The adsorption energy for the BN nanotube was −22.868 (kcal mol−1), for the CNT was −17.974 (kcal mol−1), and for the SiC nanotube was −11.989 (kcal mol−1) per hydrogen molecule. These results show that the adsorption energy for guest H2 molecules between the different surfaces is negative, which means that the formation of H2 hydrate between these surfaces is a spontaneous process (unlike the nanotube systems). The energy results also indicate that the BN system is more favorable than the other systems for gas hydrate formation, which is in agreement with the nanotube results. However, the gas hydrate shapes are more ordered in the graphene system than the BN surfaces. The more negative adsorption energy in the BN system is due to the stronger molecule–surface interactions in the BN system than in the graphene.
To examine the dynamical behavior of the confined molecules during the gas hydrate formation, we also present the self-diffusion coefficients of confined water molecules in different systems in Table 2. As this table shows, the confined water molecules have much higher diffusion coefficients in the graphene system than in the other systems, which confirms the formation of gas clathrates in the graphene system more than the other surfaces.
System | D (10−9 m2 s−1) |
---|---|
210H2O | |
Graphene | 0.1079 |
BN | 0.0037 |
SiC | 0.0081 |
210H2O + 38H2 | |
Graphene | 0.1055 |
BN | 0.0101 |
SiC | 0.0077 |
We also calculated the MSD curves of the confined H2 molecules between the different surfaces, and they are presented in Fig. S4 in the ESI.† Similarly to the confined water molecules, this figure shows that the confined H2 molecules have a greater diffusion coefficient between the graphene surfaces than the other plates.
(4) |
System | F4 | Ring-5 | Ring-6 |
---|---|---|---|
126H2O and 18H2 in BN nanotube | 0.02 | 1 | 1 |
126H2O and 18H2 in CNT | 0.03 | 9 | 10 |
126H2O and 18H2 in SiC nanotube | 0.06 | 2 | 2 |
210H2O and 38H2 between BN surfaces | 0.11 | 18 | 13 |
210H2O and 38H2 between graphene surfaces | 0.07 | 25 | 19 |
210H2O and 38H2 between SiC surfaces | 0.09 | 31 | 32 |
According to this table, the formed rings and the positive F4 values indicate that the gas hydrates are formed in all of the nanostructures. However, the most proper systems to gas–hydrate formation in this table are not exactly in agreement with the RDF, self-diffusion, and adsorption energy results. This can be due to the confinement effect in the nanotubes and between the nano-sheets in which there are not enough space to form the normal hydrate ring and cages.
(5) |
According to Table S1,† the confined water molecules in the different nanotubes experience almost a similar order of pressure values (the negative values may relate to the bubble formation in the nano-confinement26). It is also shown that the confined water molecules between the graphene surfaces experience lower pressures than those of the BN and SiC surfaces. This result is in agreement with the density profile presented in Fig. S5.† Although the different systems have a similar geometrical density, the different atomic diameter and different water–surface interactions lead to the different density profiles and pressure values.
We also investigated the hydrate formation in BN and SiC surfaces at a similar density profile of the graphene surfaces, i.e. at a density of 0.04–0.05 dalton per Å3, and repeated the simulations with similar numbers of water and H2 molecules. The corresponding results of density profiles are presented in Fig. S6 in the ESI.† As this figure shows, the new configuration of BN and SiC systems has a density profile similar to that of the graphene system. We also present the perpendicular and lateral components of the pressure tensor of the confined water molecules in the new BN and SiC systems in Table S2 in the ESI.† We also compared the results with those of the graphene system. According to Table S2,† the confined water molecules in the new BN and SiC systems experience almost a similar order of pressure values to those of the graphene system. Despite the similar density profile and pressure of the new BN and SiC configurations, the snapshots in Fig. 6 show that the H2 hydrate has not been formed completely, as formed in the case of the graphene system.
Fig. 6 H2-clathrate structures formed between new BN and SiC surface systems. The oxygen atoms are shown in red color, hydrogen atoms in white, and H2 molecules in blue. |
The F4 parameter and the formed rings were also calculated for the new BN and SiC systems, and the results are presented in Table 4.
System | F4 | Ring-5 | Ring-6 |
---|---|---|---|
210H2O and 38H2 between BN surfaces | 0.026 | 5 | 2 |
210H2O and 38H2 between SiC surfaces | 0.055 | 1 | 3 |
According to this table, the gas hydrates were formed in the new BN and SiC systems. However, according to Tables 1 and 2, the H2 hydrates in the new BN and SiC surfaces were formed less than those of the primary structures (with a similar geometrical density to that of the graphene system) and also less than those of the graphene system. The reason why the gas hydrates were not formed completely and orderly (as the graphene system) is the stronger water–surface interaction in the BN and SiC systems than in the graphene system. According to the snapshots in Fig. 7 in which we present the side views of the hydrogen clathrates in different systems, the hydrogen molecules in the graphene system were positioned between the two water (ice) layers, which indicates the formation of ordered gas clathrates, whereas the hydrogen molecules were positioned in outer layers and not between the ice layers, because of the stronger wall–hydrogen molecules in the BN and SiC systems than in the graphene system.
Fig. 7 Snapshots of the side view of the formed H2-clathrate structures in the different systems. The oxygen atoms are shown in red color, hydrogen atoms in white, and H2 molecules in blue. |
(1) The water molecules create a heptagonal ice nanotube in the CNT and a row of confined water molecules positioned in the middle space of the CNT. The more ordered heptagonal ice nanotube is formed in the SiC and BN nanotubes (especially in the BN nanotube).
(2) After the addition of 18H2 molecules in the different nanotubes, some of the H2 molecules occupied the wall of the ice nanotube and some of them were positioned in the hollow space.
(3) An interesting phenomenon is the near-complete cylinder shape, which was formed for the 108 water and 36H2 in the SiC nanotube.
(4) The first O–O RDF peaks for H2-containing nanotubes and surfaces appear at larger distances than those of the pure water systems. It is also shown that the first peaks of water–water and water–methane RDFs for the BN nanotube appear at longer distances than that of the CNT and SiC nanotube for both 126 and 108 water molecule systems. Therefore, the BN nanotube is the best system for H2 hydrate formation than the SiC nanotube and CNT.
(5) The adsorption energy for guest H2 molecules in the different nanotubes is positive.
(6) The confined water molecules have much higher diffusion coefficients in the BN nanotube than in the other systems.
(7) Although the gas hydrates have been created in all surface systems, the ordered gas hydrate shapes have been formed only in the graphene system.
(8) The first peaks of water–water and water–methane RDFs for graphene surfaces appear at longer distances than that of the BN and SiC surfaces. Therefore, the graphene surfaces are the better system for H2 hydrate formation than the SiC and BN nanotubes. This result is in agreement with the ordered gas hydrate shapes formed only for the graphene system.
(9) The adsorption energy for guest H2 molecules between the different surfaces is negative, which means that the formation of H2 hydrate between these surfaces is a spontaneous process (unlike the nanotube systems). The energy results also indicate that the BN system is more favorable than the other systems for gas hydrate formation, which is in agreement with the nanotube results.
(10) The gas hydrate shapes are more ordered in the graphene system than in the BN surfaces. The more negative adsorption energy in the BN system is due to the stronger molecule–surface interactions in the BN system than in the graphene.
(11) The confined water molecules have much higher diffusion coefficients in the graphene system than in the other systems, which confirms the formation of gas clathrates in the graphene system more than that in the other surfaces.
(12) The formed rings and the positive F4 values indicate that the gas hydrates have been formed in all of the nanostructures.
(13) The confined water molecules between BN and SiC surfaces with similar geometric densities show higher density profiles than that of the graphene system.
(14) In the new configuration of BN and SiC systems with similar density profiles to that of the graphene system, the H2 hydrate has not been formed completely as in the case of the graphene system. The H2 hydrates in the new BN and SiC surfaces have also formed less than those of the primary structures (with a similar geometrical density to that of the graphene system) and also less than that of the graphene system. This is due to the stronger water–surface interactions in the BN and SiC systems than in the graphene system.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4ra00064a |
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