Małgorzata Zienkiewicz-Machnik*a,
Roman Luboradzki
a,
Justyna Mech-Piskorz
a,
Gonzalo Angulo
a,
Wojciech Nogala
a,
Tomasz Ratajczyk
a,
Pavlo Aleshkevych
b and
Adam Kubas
*a
aInstitute of Physical Chemistry Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland. E-mail: mzienkiewiczmachnik@ichf.edu.pl; akubas@ichf.edu.pl
bInstitute of Physics Polish Academy of Sciences, Al. Lotników 32/46, 02-668 Warsaw, Poland
First published on 27th February 2025
We report structural and physicochemical characterization supported by quantum chemical studies of two novel copper(II) [CuLCl]2[CuCl4] (1) and cobalt(II) [CoLCl][CoL′Cl3] (2) cationic−anionic complexes with N-scorpionate type ligand, N,N,N-tris(3,5-dimethylpyrazol-1-ylmethyl)amine (L), where L′ is 1-methylamine-3,5-dimethylpyrazole. The obtained complexes are the first reported examples of cationic−anionic coordination compounds tested for catecholase activity. Interestingly, only copper complex (1) shows catalytic activity in the oxidation of 3,5-di-tert-butylcatechol (3,5-DTBC), which turned out to be solvent dependent. Here, experimental UV-vis spectroscopy of 1 shows that essential features of the solid-state spectrum are maintained in DMSO and MeOH solvents. In contrast, the build-up of a new feature around 465 nm for 1 in CH3CN was noted, along with negligible activity. According to quantum chemical calculations, this feature could be attributed to ligand-to-metal excitations within the [CuCl4]2− fragment disturbed by adjacent [CuLCl]+ species. The band shifts to lower energies compared to solid-state measurements as the two charged fragments get closer due to Coulomb interactions. In DMSO, the solvent molecule serves as an inert ligand in a [CuLCl]+ fragment and blocks the catalytic center, disturbing the formation of the [catalyst–substrate] complex and decreasing activity, while in MeOH, the solvent effectively stabilizes [CuCl4]2− via a H-bond network and the free coordination site is accessible, thus allowing a substrate molecule to bind. The critical advantage of the investigated complexes, in the context of their possible catalytic activity, was the fact that their usage would not introduce any unnecessary counterions.
N-heteroaromatic alcohol – 1-hydroxymethyl-3,5-dimethylpyrazole (3,5-DMePzCH2OH) – is a unique molecule that plays various functions in coordination chemistry, especially as a proligand for complexes synthesized in situ1,2 and as a precursor for the synthesis of multipodal chelating ligands.3,4 Among pyrazole-based multidentate donors, N-scorpionate-type compounds represent a very important class of ligands. They appear to be chemical analogues of poly(pyrazole)borates, introduced in the late 1960s by Trofimenko.5 Scorpionate ligands obtained by Trofimenko and their C- and N-analogues, like tris-(pyrazolyl)amines, have a widespread application in coordination chemistry. They act as ligands in metal complexes with applications such as (i) structural and functional models of metal active sites in metalloenzymes,6,7 (ii) molecular wires3 and (iii) new selective catalysts or their precursors.3,8,9
The oxidation of organic substrates with molecular oxygen under mild conditions is of great interest for industrial and synthetic processes from both economic and environmental points of view.10,11 Therefore, the synthesis and investigation of metal complexes as functional models of metalloenzymes with oxidase or oxygenase activity are of great promise for developing new and efficient catalysts for oxidation reactions.
Catechol oxidases (EC 1.10.3.1) are natural examples of enzymes that utilize molecular oxygen as an oxidant. They are type 3 copper metalloproteins that contain a dinuclear Cu(II) active site, where metal ions are linked by an OH bridge and coordinated to the nitrogen atoms of three histidine molecules. This metalloenzyme catalyzes the oxidation of catechol to o-quinone, which plays an important role in the natural production of melanin. Therefore, the oxidation of catechol to quinone remains a subject of broad industrial and scientific interest. From an industrial point of view, quinones are intermediate products for synthesizing fine chemicals, perfumes, cosmetics, drugs, and adhesives, among others.12–15 At the same time, the study of chemical models that mimic oxidases has been developed to provide bases for understanding enzymatic activity and developing simple catalytic systems that exhibit promising catalytic activity under mild conditions. So far, none of the reported mono- or binuclear Cu(II) complexes has reached an activity close to the native enzyme. Hence, it is worth expanding the search for active biomimetics to include structurally different systems, such as cationic–anionic compounds. Such systems feature the same metallic centers in both fragments but with different ligands in the first coordination sphere. The critical advantage of cationic–anionic complexes, in the context of their possible catalytic activity or potential bio-related applications, is the fact that their usage would not introduce any unnecessary counterions.
Moreover, besides copper(II) complexes,16–18 other metal ions, such as manganese,19–21 iron,22,23 nickel24–26 and cobalt27–29 with structural diversity, have also shown catechol oxidation activity. Furthermore, a wide variety of cobalt(II) complexes are known to bind dioxygen and are, therefore, frequently studied as model compounds for natural oxygen carriers and for their use in O2 storage and organic synthesis due to their catalytic properties.30 In this respect, Co(II) complexes with N-donor ligands containing binding units suitable either for the coordination of a single metal ion or for assembling dimeric centers are particularly useful.31,32
Herein, we report the syntheses and structural and spectroscopic characterization supported by quantum chemical studies of two novel Cu(II) and Co(II) cationic–anionic complexes with an N-scorpionate type ligand. For the analyzed complexes, the N-scorpionate ligand coordinates to the metal centres in the same manner, leaving free coordination sites on the metal atom where the substrate can successfully bind, which is crucial for the catalytic activity. The obtained complexes are the first reported examples of cationic–anionic coordination compounds tested for catecholase activity and may represent a structurally new and interesting group of functional mimetics of catechol oxidase. Hence, in this paper, the reported studies constitute the analysis of the structure–activity relationship, where the experimental catecholase activity is well corroborated by quantum chemical calculations. Moreover, the solvent dependency of the catalytic activity was investigated for the obtained complexes.
![]() | ||
Fig. 1 Schematic representations and coordination spheres with coordination polyhedra in cationic and anionic forms of [CuLCl]2[CuCl4] (1) and [CoLCl][CoL′Cl3] (2). |
[CuLCl]2[CuCl4] (1) | [CoLCl][CoL′Cl3] (2) | |
---|---|---|
Empirical formula | C18H27N7Cu1.5Cl3 | C24H38N10Co2Cl4 |
Moiety formula | 2(C18H27N7CuCl), CuCl4 | C18H27N7CoCl, C6H11N3CoCl3 |
Formula weight | 543.12 | 726.313 |
CCDC | 2212853† | 2213450† |
Wavelength | 0.71073 | 0.71073 |
Crystal system | Monoclinic | Triclinic |
Space group | I2/c | P![]() |
Unit cell dimensions | a = 13.5359(2) Å | a = 10.4702(4) Å |
b = 11.7557(2) Å | b = 11.8660(5) Å | |
c = 29.3343(5) Å | c = 12.9663(3) Å | |
α = 101.057(2)° | α = 80.559(3)° | |
β = 90° | β = 80.492(3)° | |
γ = 90° | γ = 78.970(3)° | |
Volume | 4581.14(13) Å3 | 1544.78(9) Å3 |
Z | 8 | 2 |
Density calc. | 1.575 g cm−3 | 1.561 g cm−3 |
Absorption coefficient | 1.775 mm−1 | 1.454 mm−1 |
F(000) | 2228 | 750.985 |
Crystal | Green block | Dark-violet plate |
Crystal size | 0.2 × 0.1 × 0.1 mm | 0.35 × 0.1 × 0.03 mm |
Index ranges | −19 ≤ h ≤ 18, −16 ≤ k ≤ 16, −40 ≤ l ≤ 41 | −15 ≤ h ≤ 15, −17 ≤ k ≤ 17, −19 ≤ l ≤ 19 |
Reflections collected (all/independent) | 54![]() |
10![]() |
Absorption correction | Multi-scan | Multi-scan |
Refinement method | Full-matrix least-squares on F2 | Full-matrix least-squares on F2 |
Restraints/parameters | 0/273 | 7/410 |
Goodness-of-fit on F2 | 1.067 | 1.0486 |
Final R indices [F2 > 2σ(F2)] | R1 = 0.0314, wR2 = 0.0736 | R1 = 0.0315, wR2 = 0.0766 |
R indices (all data) | R1 = 0.0389, wR2 = 0.0778 | R1 = 0.0394, wR2 = 0.0817 |
The geometry of the central metal ion (Cu(1)) in the anionic part is a slightly distorted tetrahedron occupied by four Cl− ions. Distortion in the geometry of the polyhedron is observed due to the formation of a hydrogen bond network between [CuCl4]2− species and methyl groups of the pyrazole ring in the heteroaromatic ligand (Table S2† and Fig. 2). A similar geometry of the [CuCl4]2− moiety was observed for other copper(II) cationic/anionic structures.35–37
A coordination sphere of the cobalt(II) centre (Co(1)) in the cationic form [CoLCl]+ is pentacoordinated by four N-donor atoms of the tripodal amine (L) and one chloride ion. The Co(1) ion possesses an almost ideal tripodal bipyramidal arrangement ({CoN4Cl} chromophore) with a τ value of 1.34 The Co(1) atom is displaced by 0.496 Å from the geometric middle point of the {CoN4Cl} trigonal bipyramid, and it is shifted in the coordinated chloride Cl(1) direction. A similar finding was observed in the case of other cobalt(II) complexes with the same cationic form as described here but with a zinc coordination anion38 and for the complex with the [CdI4]2− anionic form,39 as well as for [Co(L)Cl]ClO4.40 Moreover, like in the aforementioned [CoClL1][ZnI3L2],38 [CoClL1]2[CdI4]39 and [Co(L)Cl]ClO440 complexes, in compound 2, the axial Co–Namine bond length is longer than the other Co–N bond lengths from the equatorial plane of [CoLCl]+ and the Co–Cl distance (2.2580(4) Å) is shorter than the Co–Namine length (2.3053(12) Å) (Table S3†). This atypical arrangement of the cobalt(II) coordination sphere in [CoLCl]+ results from the specific chemical structure of the heteroaromatic ligand, i.e. tris(1-(3,5-dimethylpyrazolyl)-methyl)amine (L).38,39
The [CoL′Cl3]− counter ion contains a tetracoordinated cobalt(II) centre (Co(2)) bonded to the pyrazole derivative (1-methylamine-3,5-dimethylpyrazole, L′) through the nitrogen atom from the pyrazole ring (N(8)) and three chlorides. The coordination environment of Co(2), with the {CoNCl3} chromophore, shows a slightly distorted tetrahedral geometry (Fig. 1 and Table S3†).
Analysis of the crystal packing of 2 revealed the absence of strong hydrogen bonds in the structure. However, the crystal structure analysis shows that the organic ligand (tertiary amine – L) structure promotes the formation of intramolecular C–H⋯Cl interactions of the methyl groups C(4), C(10) and C(16) in the [CoLCl]+ form (Table S4† and Fig. 3). A similar situation was described previously in the literature for other Co(II) complexes with the same polypyrazole ligand.38,39 Moreover, in the [CoL′Cl3]− form, intramolecular N–H⋯Cl non-covalent contacts with the graph set descriptor of S(7)41,42 (Table S4† and Fig. 3) are observed. Furthermore, the crystal structure of 2 is stabilized by the intermolecular C–H⋯Cl interactions between cationic and anionic fragments and the π⋯π stacking between the pyrazole rings of the neighbouring [CoLCl]+ cations (Table S4† and Fig. 3).
It is revealed that the H⋯H non-covalent interactions have made the most significant contribution to the HS for both complexes (49.3% for 1 and 55.8% for 2), and it appears to be the most important contributor to the crystal structure packing of 1 and 2. They are represented by a cluster of points accumulated at the diagonal of the graph with di = de ∼1.1 Å in 1 and di = de ∼0.7 Å in 2 and covering the most area in the total fingerprint plot (Fig. S1 and S2†). For both compounds, the H⋯Cl non-covalent contacts are the second most important factor, contributing 36% in 1 and 25.1% in 2 to the total HS, which is in agreement with the findings revealed from the X-ray analysis of crystal packing (Fig. 2 (1) and Fig. 3 (2)). In the complexes, the H⋯Cl inter-contacts are represented as two symmetrical wings located on the two sides of the diagonal of the 2D graph (Fig. S1 and S2†). Moreover, HS analysis confirmed the presence of C⋯C interactions in the crystal structure of 2 with a contribution of about 1.1% to the HS, which are related to the π⋯π interactions of pyrazole rings, as was presented by experimental X-ray data (Fig. 3). Furthermore, the attractive C⋯H and N⋯H interatomic interactions are depicted in the total fingerprint plot of 1 and 2 as two symmetrical wings and contribute significantly to the stabilization of the supramolecular structure by 7 and 4.8% for 1 and 8.9 and 5.8% for 2 of the total interactions, respectively (Fig. S1 and Fig. S2†).
Complex | Method (solvent) | Colour | d–d (cm−1) |
---|---|---|---|
1 | DRS | Green | 12![]() ![]() |
Abs (MeOH) | Green | 12![]() ![]() |
|
Abs (CH3CN) | Green | 12![]() ![]() |
|
Abs (DMSO) | Green | 12![]() ![]() |
|
2 | DRS | Dark blue | 12![]() ![]() ![]() ![]() ![]() |
Abs (MeOH) | Purple | 11![]() ![]() ![]() ![]() |
|
Abs (CH3CN) | Blue | 11![]() ![]() ![]() ![]() ![]() |
|
Abs (DMSO) | Blue | 11![]() ![]() ![]() ![]() ![]() |
Experimental UV-vis spectroscopy of 1 shows that essential features of the solid-state spectrum are maintained in DMSO and MeOH solvents (Table 2 and Fig. S5†). In contrast, the build-up of a new feature around 21505 cm−1 (465 nm) for 1 in CH3CN was noted. Using quantum chemical calculations, we found that this feature could be attributed to ligand-to-metal charge transfer transitions in the [CuCl4]2− fragment as the two charged fragments get closer due to Coulomb interactions. This band is highly affected by the presence of a positively charged fragment (see bands (1) and (2) in Fig. 5a).
In the case of copper(II) complexes with tripodal tetradentate ligands, the coordination sphere around the copper(II) centre can possess a square-pyramidal or a trigonal–bipyramidal coordination mode, with the d-d absorption bands shifted to higher energy for the compounds with a square-pyramidal configuration compared to those with a trigonal–bipyramidal geometry.33,47,48
The d–d transition bands in pentacoordinated [CuLCl]+ cationic complex 1 (τ = 0.05) are observed at around 12020 and 14
837cm−1 in absorption spectra (MeOH) and at 12
090 and 15
650 cm−1 in the reflectance spectra (Table 2 and Fig. S5†). These bands are associated with the dxz ≈ dyz → dz2 transition accompanied by the dx2−y → dz2 transition. The band's positions correspond well with those in the solid state and are in agreement with those obtained from the calculations (Fig. 5). Similar spectral patterns for solid and solution measurements indicate almost the same geometries around the Cu(II) centers.49
Interestingly, the spectrum for the MeOH solution of 1 recorded after 4 months shows some changes compared to the spectrum for the “fresh” MeOH solution. The bands shift to lower energies (12990 and 10
152 cm−1), which can be associated with higher distortion of the coordination sphere geometry around the Cu(II) ion in [CuLCl]+. Moreover, an additional maximum can be observed in the spectrum at 14
860 cm−1, which can be attributed to the coordination of the MeOH molecules in [CuCl4]2− and the formation of hexacoordinated [CuCl4(MeOH)2]2− species.50,51 Changes in the spectrum are also related to the solution colour change from green to blue-greenish.
The analysis of the electronic spectra of 2 in the d–d range supports (except in methanol) the Co(II) coordination sphere geometry determined by X-ray diffraction. The spectra in CH3CN and DMSO remain almost unchanged compared to the spectrum for the solid state of 2 (Table 2 and Fig. S5†). Nevertheless, the UV-vis spectrum in MeOH revealed some differences. The spectrum of 2 in the solid state displays quite well-separated peaks at 12225, 14
577, 15
552, 16
610, and 19
120 cm−1. Comparing the obtained spectrum with the one found in the literature for another cationic-anionic cobalt(II) complex [CoCl(L)][CoCl4]52 and with the calculated one, it is clear that peaks with a maximum at 12
225, 16
610, and 19
120 cm−1 correspond to the characteristic 4A2′(F) → 4E′′(P), 4A2′(F) → 4A2′(P) and 4A2′(F) → 4E′(F) transitions of a high-spin pentacoordinated Co(II) complex with a trigonal–bipyramidal geometry.38,39,52–55 Moreover, the spectrum of 2 shows these bands overlaid with the diagnostic peaks at 14
577 and 15
552 cm−1 for the 4A2 → 4T1(P) transition of the [CoL′Cl3]− anion.52,55
Our calculations (see Fig. 5) show that cationic and anionic signals mix heavily in the UV-vis spectrum of 2, which was not the case for 1, where the low-energy spectrum was almost exclusively due to the cationic fragment, while the high-energy part (>20000 cm−1) was due to the electronic transition in the anionic fragment. All key transitions in 2 have quite local characteristics (Co-centered). Interestingly, the spectrum of the dimeric [CoLCl][CoL′Cl3] depends heavily on the dimeric model used in calculations (derived from the crystal structure). Here, we studied two motifs shown in Fig. 5b. We postulate that both contribute to the experimental solid-state spectrum and, therefore, are the cause of rich and broad experimental signals.
The spectrum of 2 recorded in MeOH solution shows only three prominent peaks at 11860, 16
722 (with a shoulder at 15
950 cm−1) and 19
305 cm−1 (Fig. S5†). The changes in the spectrum in MeOH and the disappearance of high intensity peaks in the range of around 12
500–16
650 cm−1, characteristic of the tetrahedral geometry of Co(II) ions, could be associated with the coordination of MeOH molecules and octahedral geometry formation in the anionic Co(II) complex – [CoL′Cl3(MeOH)2]−. Changes in the geometry of the Co(II) metal centre in the anionic form are consistent with the purple colour of the spectroscopically analyzed solution of 2 in MeOH, while the crystals of 2 are dark blue.56
Similarly, as in the case of Cu(II) complex 1, the measurements in the UV-vis region for methanol solution of 2 were performed again after 4 months. No changes in the obtained spectrum support the statement on the presence of thermodynamically more stable [CoL′Cl3(MeOH)2]− octahedral species.
The resonance spectra of powdered complex 2 are shown in Fig. 7. The spectrum consists of two different patterns. The first one, labelled as (I) in Fig. 7, represents intensive broad absorption in the magnetic field range of ∼100–300 mT. The second pattern, labelled as (II), represents a fine structure of three lines with the central line around Hres = 330 mT and two “satellite” lines symmetrically placed around the central line. Both patterns are associated with Co(II) ions having different local environments. Out of all possible coordination, an octahedral environment of Co is ruled out as it requires an orbital triplet to be the ground state. The experiment shows that the ground state of the Co ions is an orbital singlet in a high-spin state (S = 3/2) because the resonances are visible from liquid-helium up to room temperature, so the spin–lattice constant does not become too short. It is possible for four- and five-coordinated Co, and it is in agreement with the crystallographic data. The axial and possible rhombic distortions will split the ground spin quartet into two Kramers doublets. Assuming that axial distortion is dominant, the separation between the Kramers doublet is 2|D|, where D is the axial zero-field splitting parameter. Even the tentative fit of both resonance patterns allows reaching a good agreement with the experiment. The calculated absorption is shown in Fig. 7 by dashed lines. The cobalt in position (I) is described by g-factor = ∼2.1 and parameter D = ∼3.92 cm−1, while the cobalt in position (II) is described by g-factor = ∼2.04 and parameter D = ∼0.03 cm−1. By taking into account that Cl as a ligand will produce a much smaller crystal field than N, it can be assumed that pattern (I) is associated with pentacoordinated Co(1), while pattern (2) is associated with tetracoordinated Co(2) subjected to a much smaller crystal field. In summary, EPR results strongly support the electronic structure picture obtained in calculations.
The voltammetric curves with simulated voltammograms of complexes 1 and 2 are depicted in Fig. 8 and Fig. S7.† In the presented voltammograms, three main peaks can be observed in both cases with E° = 1.206, 1.646 and 2.056 V vs. NHE for complex 1 (Fig. 8a) and E° = 1.166, 1.476 and 2.196 V vs. NHE for 2 (Fig. 8b). Comparing the CV curves of the complexes with the free ligand curve (Fig. S8†) it could be revealed that peaks with E° above 2 V vs. NHE are associated with the scorpionate ligand oxidation. Furthermore, in the case of Cu complex (1), homogeneous oxidation of Fc to Fc+ can be detected. A similar phenomenon was observed for anhydrous CuCl2 (Fig. S9†) and other Cu(II) compounds.57
The waves with E° = 1.206 and 1.646 for 1 and 1.166 and 1.476 V vs. NHE for 2 can be assigned to the Cu(II/III) and Co(II/III) redox couples, respectively. According to calculations, anionic and cationic fragments of 1 have oxidation potentials of 1.20 and 1.75 V vs. NHE, respectively. For 2, the lower wave corresponds to the oxidation of the anionic fragment (0.91 V), and the oxidation of the cationic fragment was found to be at 1.38 V. Some discrepancies between calculations and experiment are mainly due to the fact that only separate fragments were considered in calculations and solvent effects (acetonitrile) were modelled only as a continuum.
The measurements of the cyclic voltammograms for the reduction process revealed that only complex 1 is reducible, contrary to complex 2 (Fig. 8c). The recorded voltammogram fits the simulated one with relatively slow kinetics of electron transfer (k0 = 2 × 10−4 cm s−1) and homogeneous regeneration of the oxidized form of the complex according to the catalytic EC′ mechanism. Based on quantum chemical calculations, we assign the reduction potential of 1 as E° = 0.472 V (close to Fc/Fc+) for the Cu(II/III) redox couple. Here, the computed value is 0.86 V for the reduction of the isolated cationic fragment (1.18 V for anionic). However, it decreases to 0.68 V when one acetonitrile molecule binds to the copper center (such a structure is anticipated in CH3CN solution). These findings should be compared to the reduction potentials of cationic and anionic fragments of 2 that were found to be 2.48 V and 2.86 V, respectively.
![]() | ||
Scheme 1 Schematic representation of catalytic oxidation of 3,5-di-tert-butyl catechol to the corresponding quinone. |
To explore the ability of the complexes to act as catalysts for catecholase activity, solutions of 1 (5 × 10−5 M) and 2 (1 × 10−4 M) were treated with a solution of 3,5-DTBC (1 × 10−2 M) under aerobic conditions in MeOH, CH3CN and DMSO, and time-dependent UV-vis spectra were recorded at intervals of 5 min up to 120 min at room temperature. For the tested Cu(II) and Co(II) complexes, only the Cu(II) complex (1) possesses catalytic activity in the oxidation of 3,5-DTBC (Fig. 9 and Fig. S10†). The obtained results for complex 1 revealed that the solvent's nature significantly affects the catecholase activity of the Cu(II) complex (Fig. 9). This is most probably related to the coordination ability of the various solvents. As far as the coordination power of the solvent is concerned, the lower the coordination power of the solvent, the higher the activity of the complexes in that solvent in catalyzing oxidation.63 Hence, kinetic experiments have been conducted to reveal solvent dependence in the tested reaction.
The oxidation of 3,5-DTBC in the presence of complex 1 was also confirmed by time-dependent analysis of the changes in the FT-IR spectrum (Fig. 10). The spectra of 3,5-DTBC after addition of complex 1 were recorded at intervals of 5 min up to 1 h at room temperature. The peak appearance during the reaction, with the maximum at 1670 cm−1 corresponding to the –CO group vibrations, confirmed the formation of quinone molecules (3,5-DTBQ).64
The kinetic parameters obtained for complex 1 are listed in Table 3. A comparison of turnover numbers for various nuclearity Cu(II) complexes is given in Table 4.66–77 This type of saturation rate dependency on the concentration of the substrate may be explained by considering the Michaelis–Menten equation for enzymatic kinetics as:
Solvent | Vmax (M s−1) (×10−7) | Std. error (×10−8) | KM (M) (×10−4) | Std. error (×10−5) | Kcat (h−1) | Kcat/KM (M−1 s−1) |
---|---|---|---|---|---|---|
MeOH | 2.50 | 0.48 | 7.85 | 3.34 | 18.02 | 6.38 |
CH3CN | 2.08 | 1.34 | 9.17 | 9.09 | 14.95 | 4.53 |
DMSO | 1.64 | 0.69 | 12.90 | 7.34 | 11.79 | 2.53 |
Complex | Nuclearity | CN | Solvent | Kcat (h−1) | Ref. |
---|---|---|---|---|---|
Here: L7 = 6-(Bis-pyrazol-1-ylmethyl-amino)-hexane-1-ol; pymimi = (2-(pyridyl-2-yl)ethyl)((1-methylimidazol-2-yl)methyl)imine; bpymima = (2-(pyridyl-2-yl)ethyl)((1-methylimidazol-2-yl)methyl)amine; EDTB = N,N,N′,N′-tetrakis(20-benzimidazolylmethyl)-1,2-ethanediamine; PhBIm2 = 2,2′-(1,2-phenylene)bis(1H-benzimidazole); L1NH2 = N,N-bis(2-pyridylmethyl)aminoethyl amine; Py3N = N,N,N-tris(2-pyridylmethyl)amine; L1 = bis(2-pyridyl carbonyl)amine; L1 = 1,2-bis(2-((pyridine-2-yl)methyleneamino)phenyl)ethane; L2 = tris((2-benzylideneamino)ethyl)amine; [22]py4pz = 9,22-bis(pyridin-2′-ylmethyl)-1,4,9,14,17,22,27,28,29,30-decaazapentacyclo-[22.2.17,14.111,14.117,20]triacontane-5,7(28),11(29),12,18,20(30), (24(27),25-octaene); L4 = α,α′-Bis[(6-methyl-2-pyridylmethyl)-(N-(pyrazol-1-ylmethyl))amino]-m-xylene; 2-AEP = 2-aminoethylpyridine; phen = 1,10-phenanthroline. | |||||
[Cu(L7)Cl]Cl | Monomeric | 5 | MeOH | 11.16 | 66 |
[Cu(pymimi)Cl2] | Monomeric | 5 | CHES buffer | 216 | 67 |
[Cu(pymima)Cl2] | Monomeric | 5 | CHES buffer | 396 | 67 |
Cu(EDTB)(NO3)2·C2H5OH | Monomeric | 6 | MeOH-Tris-HCl | 3.27 | 68 |
[Cu(PhBIm2)Cl2] | Monomeric | 4 | MeOH | 5.65 | 69 |
[Cu(L1NH2)Cl](BF4) | Monomeric | 5 | CH3CN | 340 | 70 |
[Cu(Py3N)Cl](BF4) | Monomeric | 5 | CH3CN | 600 | 70 |
[Cu(L1)(OCN)(H2O)] | Monomeric | 5 | MeOH | 29.2 | 71 |
[Cu(II)(L1)(CH3OH)](ClO4)2·CH3OH | Monomeric | 5 | CH3CN | 36 | 72 |
[Cu(L2)(CH3COO)](ClO4) | Monomeric | 5 | CH3CN | 108 | 72 |
[Cu2L2(CH3O)2]·2(CH3OH) | Dimeric | 5, 5 | MeOH | 720 | 73 |
[Cu2([22]py4pz)(μ-OH)](ClO4)3·H2O | Dimeric | 5, 5 | CH3CN | 104 | 74 |
[Cu2(2-AEP)4(μ-Cl)](ClO4)2 | Dimeric | 5, 5 | DMF | 183.6 | 75 |
[Cu2(L4)(μ-OH)2][ClO4]2·H2O | Dimeric | 5, 5 | CH3CN | 100 | 76 |
[Cu4(μ3-OH)2(μ2-OH)2(2-AEP)4(μ2-ClO4)2](ClO4)2 | Tetrameric | 5, 5, 6, 6 | DMF | 175.68 | 75 |
[Cu(phen)(NO3)2]n | Polymeric | 5, 5 | MeOH | 8.28 | 77 |
1 | Cationic–anionic | 5, 4 | MeOH | 18.02 | This work |
CH3CN | 14.95 | This work | |||
DMSO | 11.79 | This work |
To be sure that the obtained values are reliable, we have checked the correctness using suggestions included in the literature78 and compared the calculated kinetic parameters of 1 with the experimental results presented in Fig. 11. A comparison of spectral and kinetic parameters obtained during the first 10 min of the oxidation reaction for each solvent is presented in Table 5. Calc. rate/“rate” factors are close to one in each case, which confirms the accuracy of the calculations.
Solvent | ΔAbs. in 10 min | Rate![]() |
Vmax (M s−1) | Kcat (h−1) | KM (M) | Calc. rate (V0)b | V0/rate |
---|---|---|---|---|---|---|---|
a Rate has been calculated using ε = 1630 M−1 cm−1 for the product.b Calculated rate has been determined using the equation: ![]() |
|||||||
MeOH | 0.34 | 3.48 × 10−7 | 2.50 × 10−7 | 18.02 | 7.73 × 10−4 | 2.32 × 10−7 | 0.67 |
CH3CN | 0.17 | 1.74 × 10−7 | 2.08 × 10−7 | 14.95 | 8.84 × 10−4 | 1.90 × 10−7 | 1.09 |
DMSO | 0.14 | 1.43 × 10−7 | 1.64 × 10−7 | 11.79 | 1.29 × 10−3 | 1.45 × 10−7 | 1.01 |
Based on the obtained results, we observed the highest catalytic activity in MeOH, followed by CH3CN and DMSO, and this result is in line with the fact that catecholase activity is solvent dependent. Moreover, obtained data revealed that the Kcat value is the lowest for DMSO, in which complex 1 dissolves the easiest, suggesting that the solvent molecule acts as a quite inert ligand and blocks the catalytic centre. Hence, the formation of the [catalyst–substrate] complex is harder to achieve. Also, in the case of the reaction in CH3CN, the formation of the [catalyst–substrate] complex is disturbed. This probably takes place due to the short contact between [CuCl4]2− and [CuLCl]+ species demonstrated by an additional (compared to reflectance spectrum) maximum in the UV-vis spectrum at 465 nm (21505 cm−1) (vide supra). Moreover, this feature disappears in the first few seconds of the 3,5-DTBC oxidation reaction with simultaneous product formation (Fig. 12).
Conversely, the highest activity in MeOH most likely follows the stabilization of [CuCl4]2− moieties by the solvent molecules via the H-bond network so the free coordination site is accessible, thus allowing a substrate molecule to bind.
These solvent trends are in line with the results of quantum chemical calculations of cationic and anionic fragments of 1 and 2 interacting with a single solvent molecule (Table 6). Here, we note that cationic−anionic fragment interaction energy was found to be ca. −28 kcal mol−1 and −9 kcal mol−1 for 1 and 2, respectively. In the latter case, the sum of solvent interaction energies for cationic and anionic fragments is always larger than the cationic−anionic fragment interaction energy. Therefore, we expect the interfragment communication in 2 to be negligible. On the other hand, the sum of solvent interaction energies for cationic and anionic fragments of 1 in acetonitrile (−22.2 kcal mol−1) is less than the fragment interaction energy in this solvent (−28.0 kcal mol−1). Therefore, in line with the UV-vis measurements, 1 in CH3CN should have a copper active site in the cationic fragment blocked largely by the anionic fragment and stay rather inactive in the tested oxidation reaction. Two other solvents tested (methanol and DMSO) with complex 1 display the sum of solvent interaction energies comparable to or more negative than the cationic−anionic fragment interaction energy.
Solvent | 1-cation | 1-anion | 2-cation | 2-anion |
---|---|---|---|---|
MeOH | −15.1 | −13.2 | −12.3 | −12.1 |
CH3CN | −10.1 | −12.1 | −10.7 | −10.3 |
DMSO | −19.5 | −14.1 | −10.6 | −14.6 |
Various factors affect the structure–activity relationship. For an effective catechol oxidase reaction, the relationship between the nature of the central metallic atom, metal⋯metal distance, electrochemical properties, exogenous bridging ligand, ligand structure, and pH should be considered.79 Although dimeric complexes are considered more relevant for mimicking the catalytic activity owing to the active site of the naturally occurring enzyme, both mononuclear and dinuclear, as well as polymeric copper complexes, have been found to show significant catecholase activity (Table 4). Among the monomeric complexes, non-planar compounds with intermediate coordination geometry between trigonal bipyramid and square pyramidal are potential cases, while those with a square-planar environment show little or no activity.65 Furthermore, according to the literature,65 in mononuclear complexes labile ligands can be easily replaced with a substrate, leading to higher catalytic activity. Moreover, complexes with Cu⋯Cu distances in the range of 2.9–3.2 Å have been found to be the best candidates to show promising activity in catechol oxidation.65,80 Nevertheless, the literature reports dimeric copper(II) complexes in which a solid-state copper⋯copper distance is as large as 7.840 Å, which still exhibit good catecholase activity.81,82 Here, we present the first reported cationic−anionic Cu(II) complex with catecholase activity where the Cu⋯Cu distance between cationic and anionic forms is 5.593 Å and the distance between the closest situated cationic species in the crystal lattice is equal to 8.178 Å.
The analysis of Table 6 also provides hints about the lack of activity of cobalt complex 2. One should note that the interaction energies of solvent molecules are, in most cases, lower for cobalt complexes than for copper complexes. Particularly in the case of catalytically active cationic fragments, the square-pyramidal copper coordination sphere seems to provide a more convenient site for substrate binding than the trigonal bipyramidal cobalt complex. Moreover, the reduction potentials for the cationic fragment depend on the central atom (calculated to be 0.68 V and 2.48 V for Cu and Co, respectively). In fact, in the typical 3,5-DTBC oxidation reaction mechanisms catalyzed by Cu and Co complexes considered in the literature,83–86 the metallic center is reduced by the substrate in the first part of the catalytic cycle. The catalyst is then regenerated by reaction with molecular oxygen. In light of this mechanism, a relatively low reduction potential is a prerequisite for the reaction to occur. This condition is fulfilled by the examined copper complex 1.
The obtained complexes are the first reported examples of cationic−anionic coordination compounds tested for catecholase activity. We found that copper complex 1 is a good 3,5-DTBC oxidation catalyst, while cobalt complex 2 was inactive in the reaction. The latter outcome was explained by relatively high reduction potential and a less convenient substrate binding site in 2 as compared to 1, which renders catalyst reduction by the substrate impossible. Catalytic results obtained for compound 1 revealed that the solvent's nature significantly affects the catecholase activity of the Cu(II) complex. Based on the obtained results, we observed the highest catalytic activity in MeOH, followed by CH3CN and DMSO, and this result is in line with the fact that catecholase activity is solvent dependent. We note, however, that the explanation of the observed experimental trends would not be possible without a close synergy between experiment and theory. In fact, quantum chemistry provided us with “insights and numbers”, as postulated by Neese and co-workers.87
Elemental analysis was run on a UNIcube analyzer (Elementar, Germany).
IR spectra were recorded on a PerkinElmer Spectrum Two FT-IR spectrometer, in the range of 4000–450 cm−1 using the diffusive reflection method (ATR); relative intensities are indicated (w: weak, m: medium, s: strong, vs: very strong, and br: broad).
Electronic spectra of the complexes were recorded on a UV-vis spectrophotometer UV-270 (Shimadzu, Japan) for the samples dissolved in MeOH and using the same spectrometer equipped with an integrating sphere for measuring solids. The powder samples were ground with barium sulfate for the solid measurement and then pressed in a holder. Barium sulfate, spectrally pure, was delivered by Shimadzu Corporation. Deuterated solvents for all NMR experiments were purchased from EUROISOTOP and used as obtained. All NMR samples were prepared using the same procedure. This procedure is as follows. To a standard 5 mm NMR sample, 1 mg of a complex was loaded and dissolved in 0.75 ml of deuterated solvent ([D3]MeOH). All NMR spectra were recorded on a BRUKER AVANCE II 300 MHz spectrometer equipped with a W1 5 mm z-gradient BBI probe head. The temperature was controlled using a BVT unit. A standard Bruker pulse program was utilized for the acquisition of 1H NMR spectra, and the acquisition was carried out via the TopSpin 3.2 program. Each 1H NMR spectrum was recorded with ns = 512, d1 = 5 s, and aq = 2 s parameters. The acquired spectra which are presented in all figures, were processed and produced via the TopSpin3.2 program. All spectra were calibrated on the residual signal of the solvent, which was [D3]MeOH.88 1H NMR spectra were calibrated on the signal of the residual –CHD2 group with resonance at 3.346 ppm.
The EPR measurements were carried out using a Bruker EMX spectrometer working at a fixed frequency 9.37 GHz (X-band) with an Oxford Instruments helium-flow cryostat operating in the temperature range from 3.8 K to 300 K. A 100 kHz magnetic field modulation and phase sensitive detection were used to record the derivative of the absorbed microwave power.
Cyclic voltammetry measurements were conducted under ambient air using a PalmSens4 potentiostat in a standard three-electrode configuration. Ferrocene (used as an internal reference) was added to the solution to assess the redox potentials of the compounds studied. Cyclic voltammograms were compared with simulated voltammograms using DigiSim 3.03b software (Bioanalytical Systems). Platinum disk ultramicroelectrodes with a diameter of 25 μm were used as the working electrode for steady-state voltammetry. Platinum wires with diameters of 0.5 mm, 0.1 mm, and 0.025 mm were sourced from the Mint of Poland. Platinum disc microelectrodes were fabricated by sealing 25 μm or 100 μm diameter microwires into borosilicate capillaries (Sutter Instruments, o.d. 1.2 mm, i.d. 0.69 mm) under vacuum using a micropipette puller (PC-10, Narishige). The resulting composite was cut with a diamond knife and polished with 0.1 μm grade diamond lapping tape (Buehler) using a custom-built microelectrode polisher. Small glass test tubes served as open electrochemical cells.
Single crystal X-ray diffraction measurements were carried out on a Rigaku Supernova diffractometer at 100 K with monochromated Mo Kα radiation (0.71073 Å). A green block crystal of 1 and a dark-violet plate crystal of 2 of approximate dimensions 0.3 × 0.1 × 0.1 and 0.35 × 0.1 × 0.03 mm were used, respectively. The data reduction was performed by using CrysAlisPro software.89 The structures were solved by direct methods and refined on F2 by full-matrix least-squares by using SHELXS97 and SHELXL97.90 All non-hydrogen atoms were refined as anisotropic, while hydrogen atoms were placed in calculated positions and refined in riding mode. The figures were made using Mercury software.91 CCDC 2212853 (1) and 2213450 (2) contain supplementary crystallographic data for this paper.†
Hirshfeld surface and 2D fingerprint calculations were performed using the Crystal Explorer package ver. 21.5.92 Crystal structures were imported from CIF files. The bond lengths of hydrogen atoms were normalized to standard neutron values (C–H = 1.083 Å, O–H = 0.983 Å, and N–H = 1.009 Å). Hirshfeld surfaces were generated for complex molecules using high resolution and mapped with the dnorm functions. 2D fingerprint plots were prepared using the same software.
To determine catecholase activity, spectrophotometric titrations of a 5 × 10−5 M solution of complexes 1 and 2 were carried out with a 1 × 10−2 M (>100-fold equivalents) concentrated solution of 3,5-DTBC, and the course of the reaction was followed by recording time-dependent UV-vis spectra of the mixture on a UV-visible spectrophotometer UV-270 (Shimadzu, Japan) under aerobic conditions up to 2 h at 5 min intervals. Kinetic parameters for 1 and (NH4)2[CuCl4] were determined based on online UV-vis spectra measurements during the first 10 min (2s intervals) of the oxidation reaction of 3,5-DTBC in the presence of 1 on an Ocean Optics USB4000 Fiber Optic Spectrometer (Ocean Optics, Inc.). Additionally, the changes in the FT-IR spectrum during the reaction of 1 (1 × 10−3 M) with 3,5-DTBC (1 × 10−1 M) in DMSO were recorded on a PerkinElmer Spectrum Two FT-IR spectrometer, using a Specac Pearl™ liquid analyser. The spectra were collected under aerobic conditions, at room temperature up to 1 h at 5 min intervals.
Oxidation and reduction potentials were computed using the well-established protocol described elsewhere by some of us.101 Briefly, ground and ionized states were fully optimized with the BP86+D3 setup and the CPCM solvation model with parameters chosen to model acetonitrile solvent. Single-point energies were evaluated with the B3LYP functional102,103 with D3 dispersion correction. Energy differences between ground and ionized states were referenced against a theoretical standard hydrogen electrode, for which absolute potential was obtained via the aforementioned protocol as −4.48 V, assuming a Gibbs free energy of proton solvation of −262.4 kcal mol−1.104 By computing both electrode processes at the same level, we took advantage of error cancellation to a large extent.
The XYZ coordinates of all geometries are provided in the ESI.†
Crystallographic data for all structures reported in this paper have been deposited with CCDC 2212853 and 2213450.†
Footnote |
† Electronic supplementary information (ESI) available: Bond lengths and angles for 1 and 2, relevant interatomic contacts for 1 and 2 and π⋯π interactions for 2, HS analysis for 1 and 2, 1H NMR spectra for complexes 1 and 2, UV-vis and CV spectra for 1 and 2, EPR spectra for 1 and the kinetics for [CuCl4]2−. CCDC 2212853 and 2213450. For ESI and crystallographic data in CIF or other electronic format see DOI: https://doi.org/10.1039/d4dt03478c |
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