Salt bridges govern the structural heterogeneity of heme protein interactions and porphyrin networks: microperoxidase-11

Abstract

In this work, a proteolytic digest of cytochrome c (microperoxidase 11, MP-11) was used as a model to study the structural aspects of heme protein interactions and porphyrin networks. The MP-11 structural heterogeneity was studied as a function of the starting pH (e.g., pH 3.1–6.1) and concentration (e.g., 1–50 μM) conditions and adduct coordination. Trapped ion mobility spectrometry coupled to mass spectrometry (TIMS-MS) showed the MP-11 structural dependence of the charge state distribution and molecular ion forms with the starting pH conditions. The singly charged (e.g., [M]⁺, [M − 2H + NH₄]⁺, [M − H + Na]⁺ and [M − H + K]⁺) and doubly charged (e.g., [M + H]²⁺, [M − H + NH₄]²⁺, [M + Na]²⁺ and [M + K]²⁺) molecular ion forms were observed for all solvent conditions, although the structural heterogeneity (e.g., number of mobility bands) significantly varied with the pH value and ion form. The MP-11 dimer formation as a model for heme-protein protein interactions showed that dimer formation is favored toward more neutral pH and favored when assisted by salt bridges (e.g., NH₄⁺, Na⁺ and K⁺vs. H⁺). Inspection of the dimer mobility profiles (2+ and 3+ charge states) showed a high degree of structural heterogeneity as a function of the solution pH and ion form; the observation of common mobility bands suggest that the different salt bridges can stabilize similar structural motifs. In addition, the salt bridge influence on the MP-11 dimer formations was measured using collision induced dissociation and showed a strong dependence with the type of salt bridge (i.e., a CE₅₀ of 10.0, 11.5, 11.8 and 13.0 eV was observed for [2M + H]³⁺, [2M − H + NH₄]³⁺, [2M + Na]³⁺ and [2M + K]³⁺, respectively). Measurements of the dimer equilibrium constant showed that the salt bridge interactions increase the binding strength of the dimeric species.