Modelling ligand exchange in metal complexes with machine learning potentials

Abstract

Metal ions are irreplaceable in many areas of chemistry, including (bio)catalysis, self-assembly and charge transfer processes. Yet, modelling their structural and dynamic properties in diverse chemical environments remains challenging for both force fields and ab initio methods. Here, we introduce a strategy to train machine learning potentials (MLPs) using MACE, an equivariant message-passing neural network, for metal–ligand complexes in explicit solvents. We explore the structure and ligand exchange dynamics of Mg2+ in water and Pd2+ in acetonitrile as two illustrative model systems. The trained potentials accurately reproduce equilibrium structures of the complexes in solution, including different coordination numbers and geometries. Furthermore, the MLPs can model structural changes between metal ions and ligands in the first coordination shell, and reproduce the free energy barriers for the corresponding ligand exchange. The strategy presented here provides a computationally efficient approach to model metal ions in solution, paving the way for modelling larger and more diverse metal complexes relevant to biomolecules and supramolecular assemblies.

Graphical abstract: Modelling ligand exchange in metal complexes with machine learning potentials

Supplementary files

Article information

Article type
Paper
Submitted
26 jún. 2024
Accepted
31 júl. 2024
First published
03 ágú. 2024
This article is Open Access
Creative Commons BY license

Faraday Discuss., 2024, Advance Article

Modelling ligand exchange in metal complexes with machine learning potentials

V. Juraskova, G. Tusha, H. Zhang, L. V. Schäfer and F. Duarte, Faraday Discuss., 2024, Advance Article , DOI: 10.1039/D4FD00140K

This article is licensed under a Creative Commons Attribution 3.0 Unported Licence. You can use material from this article in other publications without requesting further permissions from the RSC, provided that the correct acknowledgement is given.

Read more about how to correctly acknowledge RSC content.

Social activity

Spotlight

Advertisements