Themed collection MSDE Open Access Spotlight


Re-engineering luminol: new frontiers in chemiluminescence chemistry
Luminol and its derivatives have emerged as powerful chemiluminescent agents with broad applications in biomedical diagnostics, forensic science, and environmental monitoring.
Mol. Syst. Des. Eng., 2025,10, 606-619
https://doi.org/10.1039/D5ME00065C

Toward understanding biomolecular materials comprising intrinsically disordered proteins via simulation and experiment
Different simulation approaches have been applied to understanding and predicting key features of the solution behavior of intrinsically disordered proteins.
Mol. Syst. Des. Eng., 2025,10, 502-518
https://doi.org/10.1039/D4ME00197D

Is DFT enough? Towards accurate high-throughput computational screening of azobenzenes for molecular solar thermal applications
We present an accurate and efficient screening protocol for azobenzene derivatives for Molecular Solar Thermal (MOST) applications based on ground state properties.
Mol. Syst. Des. Eng., 2025,10, 13-18
https://doi.org/10.1039/D4ME00183D

Dual-labelled polymeric micelles for singlet oxygen reporting in biological systems
Dually-labelled polymeric micelles allowed tracing both the probe location and the levels of singlet oxygen (1O2) in biological systems.
Mol. Syst. Des. Eng., 2025,10, 7-12
https://doi.org/10.1039/D4ME00105B

Fitting a square peg in a round hole: parameterisation of quasi-spherical molecules employing the Mie potential
Apart for the case of noble gases, no single set of molecular force field parameters can simultaneously describe the fluid phase equilibria, transport, and solid transition properties of quasi-spherical molecules.
Mol. Syst. Des. Eng., 2025,10, 620-634
https://doi.org/10.1039/D5ME00048C

Origins of curvature in meso-tetra(4-sulfonatophenyl) porphine aggregation: molecular dynamics and electronic spectroscopy
We extended GAFF parameters for porphyrin macrocycles and obtained TPPS4 tetramers trajectories, which shows the emergence of global tetramer structure curling.
Mol. Syst. Des. Eng., 2025,10, 635-648
https://doi.org/10.1039/D5ME00010F

Harnessing peptide–cellulose interactions to tailor the performance of self-assembled, injectable hydrogels
Peptide–polyurea (PPU)/cellulose nanocrystal (CNC) nanocomposites demonstrate hierarchical assembly into non-covalent hydrogels with tunable strength and rapid shear recovery.
Mol. Syst. Des. Eng., 2025,10, 662-674
https://doi.org/10.1039/D5ME00009B

Computational screening analysis of iron zeolites for selectively capturing NOx and CO over H2O and CO2
Unlocking the selective adsorption of NO, NO2 and CO in the presence of H2O and CO2 using iron zeolites: a systematic DFT screening of key questions and properties.
Mol. Syst. Des. Eng., 2025, Advance Article
https://doi.org/10.1039/D5ME00003C

Grain boundaries in periodic vs. in aperiodic crystals composed of colloids with preferred binding angles
Grain boundaries for systems composed of patchy colloids with a periodic order and in aperiodic structures.
Mol. Syst. Des. Eng., 2025, Advance Article
https://doi.org/10.1039/D5ME00076A

DynaMate: leveraging AI-agents for customized research workflows
Developments related to large language models (LLMs) have deeply impacted everyday activities and offer the potential to automate complex research workflows involving repetitive and time-consuming tasks. The presented template enables the rapid incorporation of custom tools with LLM agents.
Mol. Syst. Des. Eng., 2025,10, 585-598
https://doi.org/10.1039/D5ME00062A

Elucidating the role of charge transfer on semiconductor properties in a new donor–acceptor cocrystal 1,5-dihydroxynaphthalene : TCNQ
In this work, we have investigated the semiconducting properties of an unprecedented 1 : 1 π-stacked donor–acceptor cocrystal of 1,5-dihydroxynaphthalene (DHN) as the π-donor (D) with 7,7′,8,8′-tetracyanoquinodimethane (TCNQ) as the π-acceptor (A).
Mol. Syst. Des. Eng., 2025,10, 519-533
https://doi.org/10.1039/D5ME00033E

Vasoactive intestinal peptide amphiphile micelle material properties influence their cell association and internalization
Self-assembled peptide amphiphile micelles act as nanostructured, modular drug delivery vehicles whose architectures can be tuned for efficient transport of therapeutic peptides for a multitude of applications.
Mol. Syst. Des. Eng., 2025,10, 534-548
https://doi.org/10.1039/D4ME00167B

Enhanced thermal response of 3D-printed bilayer hydrogels via nanoclay incorporation
Nanoclay enhances the actuation of thermally-responsive 3D-printed hydrogel bilayers.
Mol. Syst. Des. Eng., 2025, Advance Article
https://doi.org/10.1039/D5ME00018A

Quantum chemical screening of eutectic solvent components for insights into CO2 complexation mechanisms
Different eutectic solvent components are simulated to understand the thermodynamics associated with the different, potential CO2 complexation pathways.
Mol. Syst. Des. Eng., 2025,10, 447-458
https://doi.org/10.1039/D5ME00034C

Construction of an organic cage-based porous ionic liquid using an aminal tying strategy
An organic cage-based porous ionic liquid (PIL) was constructed by functionalising a reduced cage core with ionic liquid functionality. The resulting PIL displayed melting behaviour, a glass phase, enhanced CO2 uptake and permanent porosity.
Mol. Syst. Des. Eng., 2025,10, 459-463
https://doi.org/10.1039/D5ME00004A

Transfer learning accelerated discovery of conjugated oligomers for advanced organic photovoltaics
Transfer learning followed by density functional theory accelerates material discovery of conjugated oligomers for high-efficiency organic photovoltaic materials.
Mol. Syst. Des. Eng., 2025,10, 413-423
https://doi.org/10.1039/D4ME00188E

Mesoscale modelling of polymer-mediated adhesion: application to tack tests
Computational models of polymer adhesion reveal how pulling speed, interfacial kinetics and detachment mechanisms influence performance.
Mol. Syst. Des. Eng., 2025,10, 394-412
https://doi.org/10.1039/D4ME00199K

Expediting field-effect transistor chemical sensor design with neuromorphic spiking graph neural networks
Improving the sensitive and selective detection of analytes in a variety of applications requires accelerating the rational design of field-effect transistor (FET) chemical sensors.
Mol. Syst. Des. Eng., 2025,10, 345-356
https://doi.org/10.1039/D4ME00203B

Investigating structural biophysical features for antigen-binding fragment crystallization via machine learning
Crystal-site and non-crystal-site residues in crystal interfaces are classified using machine learning and in silico modeling to identify key structural physicochemical features influencing fragment antigen-binding (Fab) crystallization.
Mol. Syst. Des. Eng., 2025,10, 377-393
https://doi.org/10.1039/D4ME00187G

A bio-inspired approach to engineering water-responsive, mechanically-adaptive materials
This paper highlights a bioinspired approach to engineering water-responsive materials via a diverse array of self-assembled nanostructures.
Mol. Syst. Des. Eng., 2025,10, 264-278
https://doi.org/10.1039/D4ME00177J

Reweighting configurations generated by transferable, machine learned models for protein sidechain backmapping
Backmappings of protein sidechains exposing exact probability densities of generated configurations enable reweighting with protein force fields. Though trained models produce low-energy configurations, reweighting remains unexpectedly challenging.
Mol. Syst. Des. Eng., 2025,10, 298-313
https://doi.org/10.1039/D4ME00198B

Molecular analysis and design using generative artificial intelligence via multi-agent modeling
We report the use of a multiagent generative artificial intelligence framework, the X-LoRA-Gemma large language model (LLM), to analyze, design and test molecular design.
Mol. Syst. Des. Eng., 2025,10, 314-337
https://doi.org/10.1039/D4ME00174E

Nanostructured liquid-crystalline ion conductors based on linear carbonate moieties: effects of oligooxyethylene and alkylene spacers on self-assembled properties and ionic conductivities
Ion-conductive 2D nanostructured liquid crystals containing linear carbonate moieties are developed. The complexes of these materials with lithium salts may have potential as self-assembled electrolytes in lithium-ion batteries.
Mol. Syst. Des. Eng., 2025,10, 184-193
https://doi.org/10.1039/D4ME00176A

Process-based screening of porous materials for vacuum swing adsorption based on 1D classical density functional theory and PC-SAFT
Integrating a thermodynamic model for solid–fluid interactions into a process model to screen nanoporous materials for carbon capture.
Mol. Syst. Des. Eng., 2025,10, 219-227
https://doi.org/10.1039/D4ME00127C

Understanding stable adsorption states in flexible soft porous coordination polymers through free energy profiles
Soft porous coordination polymers show metastable states in volume while varying loading. The flexibility of the linkers affects the resulting configurations.
Mol. Syst. Des. Eng., 2025,10, 194-204
https://doi.org/10.1039/D4ME00154K

PepMNet: a hybrid deep learning model for predicting peptide properties using hierarchical graph representations
Peptides are a powerful class of molecules that can be applied to a range of problems including biomaterials development and drug design.
Mol. Syst. Des. Eng., 2025,10, 205-218
https://doi.org/10.1039/D4ME00172A

Investigating the design of macromolecular-based inks for two-photon 3D laser printing
The relationship between the design of macromolecular inks and material properties of two-photon 3D laser printed structures is investigated.
Mol. Syst. Des. Eng., 2025,10, 176-183
https://doi.org/10.1039/D4ME00160E

Accelerating multicomponent phase-coexistence calculations with physics-informed neural networks
We develop a physics-informed machine learning workflow that accelerates multicomponent phase-coexistence calculations on the number, composition, and abundance of phases. The workflow is demonstrated for systems described by Flory–Huggins theory.
Mol. Syst. Des. Eng., 2025,10, 89-101
https://doi.org/10.1039/D4ME00168K

DORA-XGB: an improved enzymatic reaction feasibility classifier trained using a novel synthetic data approach
We outline a method for synthetically generating negative data by considering alternative reaction centers on small-molecule substrates that are known to participate in enzymatic reactions.
Mol. Syst. Des. Eng., 2025,10, 129-142
https://doi.org/10.1039/D4ME00118D

Enhanced glucose-responsivity of PBA–diol hydrogel networks by reducing crosslink affinity
New diol chemistries are explored for insulin delivery from glucose-responsive hydrogels comprised of dynamic-covalent crosslinking interactions between phenylboronic acids and diols.
Mol. Syst. Des. Eng., 2025,10, 40-49
https://doi.org/10.1039/D4ME00106K
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All featured articles are published Gold Open Access and are free to read in MSDE.