Christopher B.
Kelly
*a,
John A.
Milligan
*b,
Leon J.
Tilley
c and
Taylor M.
Sodano
d
aDiscovery Process Research, Janssen Research & Development LLC, 1400 McKean Road, Spring House, PA 19477, USA. E-mail: ckelly5@its.jnj.com
bDepartment of Biological and Chemical Sciences, College of Life Sciences, Thomas Jefferson University, 4201 Henry Avenue, Philadelphia, PA 19144, USA. E-mail: john.milligan@jefferson.edu
cDepartment of Chemistry, Stonehill College, 320 Washington Street, Easton, MA 02357, USA
dTherapeutics Discovery, Janssen Research & Development LLC, 1400 McKean Road, Spring House, PA 19477, USA
First published on 25th August 2022
The unique chemistry of small, strained carbocyclic systems has long captivated organic chemists from a theoretical and fundamental standpoint. A resurgence of interest in strained carbocyclic species has been prompted by their potential as bioisosteres, high fraction of sp3 carbons, and limited appearance in the patent literature. Among strained ring systems, bicyclo[1.1.0]butane (BCB) stands apart as the smallest bicyclic carbocycle and is amongst the most strained carbocycles known. Despite the fact that BCBs have been synthesized and studied for well over 50 years, they have long been regarded as laboratory curiosities. However, new approaches for preparing, functionalizing, and using BCBs in “strain-release” transformations have positioned BCBs to be powerful synthetic workhorses. Further, the olefinic character of the bridgehead bond enables BCBs to be elaborated into various other ring systems and function as covalent warheads for bioconjugation. This review will discuss the recent developments in the synthesis and functionalization of BCBs as well as the applications of these strained rings in synthesis and drug discovery. An overview of the properties and the historical context of this interesting structure will be provided.
Evidence for this unique structure can also be established by NMR spectroscopy.4a The proton NMR spectrum is very characteristic in terms of the significant chemical shift differences between the endo, exo, and bridgehead protons (0.489, 1.500, and 1.358 ppm in CDCl3), respectively (Scheme 1B).12 The enhanced s character of the shorter bridgehead methine C–H bonds is experimentally verifiable by observing the 13C–1H coupling constant (202 Hz).13 For context, this value lies between the 13C–1H coupling values observed for ethylene (156 Hz) and acetylene (249 Hz) (Scheme 1B). These observations, along with other spectroscopic evidence mentioned above, point to substantial π character of the strained central C–C bond.13,14
The quantification of strain energy in the BCB structure has been a topic of longstanding theoretical interest. Meier has recently reported a group contribution approach that has provided excellent agreement between theoretical (217.5 kJ mol−1) and experimental (217 kJ mol−1) formation enthalpies, and predicts a strain energy of 267 kJ mol−1 (∼64 kcal mol−1).15 Although the dominant contribution to the strain energy is most often cited to be Baeyer strain,16 bridgehead substituent effects also contribute significantly to the energy of the system. Dill has calculated the effects of a variety of substituents on the strain energy of BCB.17 Most notably, CF3, CN, and Li were seen to be stabilizing, although calculations for CN predicted less decrease in strain energy than suggested by experimental data. Hoz has shown the bridgehead substituent effects to be predominantly electronic, with little effects due to changes in Baeyer strain from potential deformation of the ring.18 Indeed, it is well-known that some electron withdrawing groups exhibit a stabilizing effect, and many of the early (and current) examples of BCBs contain such groups.3,13 Inagaki has also shown that bridgehead substituents can be a determining factor as to whether the bridgehead carbons exhibit “inverted” tetrahedral configurations (all four atoms bonded to carbon are on the same side of the plane containing the carbon) as a result of the extent to which they influence geminal delocalization between the bridgehead and side bonds.19 Based on a mean value for the angles of the six “substituents” on both carbon atoms of the bridgehead bond of 82°, Chaquin20 has recently classified the bridgehead bond in BCB as an “inverted bond” in which the smaller back lobes of the hybrid orbitals overlap to form the C–C σ-bond, while the larger lobes point outward.
Concomitant with the significant extent of s character of the bridgehead carbons, the strained central C–C bond in BCB can be described as being composed of hybrid orbitals which are nearly entirely p in nature (Scheme 1A). This hybridization gives rise to a bent σ-bond with a significant amount of π character (26.1% as determined by Newton).9a More recently, as part of a systematic correlation of σ-bond strength to bond angle for a series of hydrocarbons, Chaquin20 has indicated that the smaller bond angles in BCB correlate to decreased σ but increased compensatory (39.7%) π contribution (including some three-center, two electron bonds involving the methylenes). As expected, the overall bond strength does decrease as a result of strain. Dias calculated NICS (Nucleus Independent Chemical Shift) values and compared them to BRE (bond resonance energy) values based on a system modified for saturated hydrocarbons.21 A negative NICS value indicating that the 3-membered rings in BCBs are diatropic, in conjunction with positive BRE values, provide good evidence for significant σ-aromaticity characteristics (Scheme 1A).
The unusual bonding in BCB translates into fundamental differences in its acidic and basic behavior relative to unstrained hydrocarbons. The strain reduction in bridgehead-lithiated BCB noted by Dill17 correlates well to the relative acidity of the bridgehead hydrogens, rendering it a readily accessible and useful reactive intermediate in numerous syntheses.3,22 Whitman determined that these bridgehead C–H bonds have more s character (28%) than traditional Csp3 C–H bonds and are significantly more polarized than those of bicyclopentane, with correspondingly higher acidity (Scheme 1A).23 Kass has measured a gas phase acidity of BCB as 398 ± 2 kcal mol−1.24a Alkorta and Elguero have predicted a pKa of 37.9.24b The BCB system is also predicted to have some moderate gas phase hydrogen-bond acidity (H–B donating ability).25a In terms of basicity, Lee-Ruff has recently computed a proton affinity for BCB of 870 kJ mol−1, suggesting it is one of the most basic saturated hydrocarbons. Protonation is predicted to occur at the bridgehead carbon, leading to a cyclopropylcarbinyl cation.25b
Much of the chemistry of BCB is, in fact, due to the π character of the bridgehead bond.3,26 This C–C bond is known to react with a wide variety of electrophiles and nucleophiles, in processes ranging from solvolysis-type reactions to the addition of “hard” organometallic nucleophiles3 and a variety of thermal and photochemical cycloadditions.3,27 This bond has also been shown to react in tandem with bridgehead aryl groups as part of a conjugated system.28
The reactivity of the central C–C bond in BCB has also been leveraged in the development of cyclobutane-containing polymers formed by free-radical or anionic ring-opening of the corresponding BCB monomers (Scheme 1C).29 In fact, Wiberg's report on the first synthesis of a BCB structure (ethyl bicyclobutane-1-carboxylate) noted that this compound would polymerize spontaneously at room temperature.30 Hall subsequently reported the synthesis and polymerization of substituted BCB derivatives.31 These systems were found to co-polymerize with each other and with other vinyl monomers, and to have reactivities similar to corresponding vinyl compounds.32 Further work in this area showed the successful free radical polymerization and co-polymerization of a variety of BCBs with electron-withdrawing (nitrile, ester, ketone) substituents capable of stabilizing radical intermediates. Anionic and cationic conditions were not successful in this case.33 Indeed, poly(1-cyanobicyclobutane) (Scheme 1C) was studied for potential applications as a replacement for polyacrylonitrile and found to be a superior textile material, but was not utilized commercially due to high cost of monomer production (though some interest remains in the properties of the corresponding polyester material).31
The stereochemistry of these polymerizations has also been investigated. In general, polymerization using more highly substituted monomers or anionic polymerization seems to offer higher degrees of stereospecificity.34 Barfield reported approximately a 75:25 ratio of trans- to cis-linkages in anionic poly(bicyclobutane-1-carbonitrile) (PBBC).35 A subsequent study of PBBC prepared by radical polymerization found a 68:32 isomeric ratio, comparable to radical poly(1-methoxycarbonyl)bicyclobutane (68:32) and poly(bicyclobutane-1-carboxamide) (73:27).36 Hall found similar results for polymerization of a series of bicyclobutanecarboxylate esters; neither variation of the polymerization conditions nor the alkyl group on the ester caused appreciable variation from the roughly 66:33 ratio.31 The free radical polymerization of the more-substituted dimethyl bicyclobutane-1,3-dicarboxylate, however, gave a polymer with 95% trans stereochemistry.29 Anionic polymerization of methyl bicyclobutane-1-carboxylate itself gives trans-ratios of >90%, when initiated with tert-butyllithium/bis(2,6-di-tert-butylphenoxy)ethylaluminum in toluene at −78 °C, albeit with low initiator efficiency and broad molecular weight distribution.34 A mechanistic study concluded that attack of tert-butyllithium on the ester to incorporate less-reactive ketone unit anions was occurring as a side-reaction but was mostly suppressed by coordination of the ester to the aluminium Lewis acid.34
Photochemical methods have been employed for synthesis (and degradation) of BCB, and the mechanistic pathways of these reactions have been studied.37 The 185 nm photolysis of BCB leads to the formation of butadiene and cyclobutene (Scheme 1D). Two possible pathways, one involving a concerted cleavage of two opposite non-bridgehead bonds, and the other involving cleavage of the bridgehead bond to a diradical followed by additional photolysis to an allylcarbene, were postulated. Isotopic labelling studies using both deuterium and 13C labelled substrates seem to suggest both mechanisms could be in operation.38
In 1965, Vellturo eported the first electrochemical synthesis of a BCB, noting that the electrolysis of trans, trans, trans-1,3-dicarboxy-2,4-dicarbomethoxycyclobutane yielded 2,4-dicarbomethoxybicyclobutane.42 Subsequently, Rifi demonstrated in 1967 that BCBs can be prepared by anodic reduction of 1,3-dibrominated cyclobutanes, suggesting that the Wiberg-type trans-annular coupling reactions proceed through homolytic union of a biradical intermediate.43
Though clearly groundbreaking, these initial methods for BCB synthesis had a limited capacity to generate substituted derivatives. An advancement along these lines came with Sieja's 1971 report on the use of cyclobutanones (which are readily obtained by ketene/vinyl ether [2 + 2] cycloaddition) as an entry to BCB scaffolds with bridgehead substituents.44 Reaction of these 3-alkoxy cyclobutanones with PhMgBr gave the corresponding alcohols which were readily converted to tertiary chlorides. Treatment of these halides with magnesium metal in refluxing THF induces the formation of BCBs. Sieja and Hall also showed that this approach can be used to prepare BCBs with nitrile substituents, which can be used in polymerization studies and other ring-opening nucleophilic reactions (Scheme 2C). Indeed, treatment of 3-chlorocyclobutanecarbonitrile with potassium tert-butoxide gave facile access to a cyano-substituted BCB needed for polymerization studies.32a
An alternative approach to the strained BCB carbocycle was advanced by Gaoni in 1982 (Scheme 2D).45 Rather than using 1,3-disubstituted cyclobutane derivatives as starting materials, this approach used sequential intramolecular cyclopropanation reactions to access BCB sulfones. Starting from easily accessible epoxy-sulfones, treatment with n-BuLi triggers a cyclopropane formation with concomitant epoxide opening. The resulting alcohol can be converted into a sulfonate ester and subjected to a second lithiation/cyclopropanation sequence. Although somewhat circuitous, this approach is adaptable for a variety of substituents and for many years was the state-of-the-art method for the preparation of substituted BCBs. In fact, this strategy was relied upon by Baran and others in recent reports on strain-release functionalization (described later in this Minireview).46 Interestingly, Lindsay and co-workers recently developed a concise syntheis of sulfonyl-substituted BCBs from methyl sulfones and epichlorohydrin (and related epoxides) that proceeds via ring contraction of an activated cyclobutanol intermediate.47
One of the most versatile methods for the preparation of BCBs was developed by Brinker and co-workers in 1999 (Scheme 2E).22 This approach uses 1,1-dibromocyclopropanes as starting materials, which are easily accessed by dibromocarbene cyclopropanation of allyl chlorides. Treatment of this trihalide with two equivalents of an alkylithium results in a bicyclobutyllithium species, which can be trapped with a variety of electrophiles. Likewise, Gassman showed that lithiated BCBs could be accessed via direct deprotonation of the bridgehead C–H bond using an organolithium species. The resulting lithiated BCB could then be alkylated (Scheme 2F).48
The conceptually most straightforward approach to BCB synthesis is a [2 + 1] reaction between a carbene equivalent and a cyclopropene, or double cyclopropanation of an alkyne. Although Wipf and co-workers demonstrated that this approach can be realized through a zirconium-mediated multicomponent transformation,49 the generality of accessing BCBs from alkynes and/or cyclopropenes using traditional Simmons-Smith chemistry is limited.50 However, metal-mediated decomposition of diazo species offers a convenient means to affect [2 + 1] addition with the opportunity for enantioselectivity. Early reports of this approach were advanced by both Ganem51 and Hussain52 (Scheme 3). Both studies used an intramolecular cyclopropanation of a homoallylic diazo species to build both rings of BCB at once rather than necessitating isolation of unstable cyclopropene intermediates. Only a few examples were documented in these reports, leaving open questions of generality and the potential for asymmetric BCB construction. In nearly concurrent reports in 2013, Davies53 and Fox54 were able to address these unknowns (Scheme 3). Using similar conditions to Ganem, Davies showed that the reaction proceeds with excellent diastereoselectivity when using homoallylic diazo species bearing a disubstituted olefin. Davies and co-workers later found that Rh2(R-BTPCP)4 could be used to affect enantioselective BCB synthesis. Highly enantioenriched 2-arylbicyclo[1.1.0]butane carboxylates could be assembled from 2-diazo-5-arylpent-4-enoates under remarkably mild conditions. Fox and co-workers were able to develop conditions that provided more substrate generality and generally higher enantioselectivity by using Rh2(S-NTTL)4 at cryogenic temperatures. In the case of the Fox report, the authors demonstrated that their enantioenriched BCB products could be used with organocuprate nucleophiles for homoconjugative addition to yield enantioenriched, densely functionalized cyclobutanes. Fox later used this stereoselective BCB formation-ring opening sequence in a synthesis of the cyclobutane-containing natural product piperarborenine B.55
A longstanding challenge in the field of BCB synthesis has been the lack of a facile means to introduce substituents on the methylene “wings” of the BCB structure. Anderson and co-workers recently advanced a solution to this problem by demonstrating that BCBs can be used in directed ortho metalation (DoM)-type reactions (Scheme 6C).68 This innovative approach uses a BCB with an amide at the bridgehead position to direct the deprotonation to the non-bridgehead methylene. sec-BuLi and TMEDA at temperatures as high as −40 °C were identified as ideal for executing this so-called “bridge-metalation”. Subsequent electrophilic quench furnished an array of BCBs bearing various functional groups. Further, the authors also demonstrated that sequential functionalization was possible, allowing both non-bridgehead sides of the BCB to be appended with electrophilic fragments. Desymmetrization strategies were pursued; the authors obtained a 2.7:1 diasteromeric ratio by using a C2-symmetric ligand.
Gaoni and co-workers carried out additional studies along these lines that focused on C–C bond formations enabled by organocuprate-mediated additions to BCB-sulfones.71 This concept was used for the synthesis of various substituted cyclobutanes, including a cyclobutane-containing pheromone natural product.72 Mechanistic studies suggest that the cuprate reagent approaches the central BCB bond selectively from the endo position, but the protonation of the resultant α-sulfonyl anion ultimately determines whether the cis or trans diastereomer predominates.73 The use of butylated hydroxytoluene (BHT) as a bulky proton source in a more recent application of this reaction validated this hypothesis, enabling highly diastereoselective cuprate addition to BCB-esters.54
A watershed moment for reinvigorating interest in BCBs came in 2016 when Baran and co-workers investigated the reaction of BCBs with amide nucleophiles. This approach, dubbed “strain-release amination”, is useful for the introduction of the cyclobutylamino motif on a variety of medicinally-relevant structures (Scheme 7A).46 Aryl sulfones were used as bridgehead activator groups, but they can be reductively removed. This strain-release approach was shown to be rather general: azabicyclobutanes and [1.1.1]propellane react in a similar manner with a variety of amine nucleophiles.46b Similarly, Milligan, Wipf, Busacca, and Senanayake showed that phosphine–borane anions can be used as nucleophiles to attack BCB-nitriles (Scheme 7B).74 This method provides convenient access to borane-protected tertiary phosphines with an appendage that can be used in the preparation of bidentate ligands.
Scheme 7 Strain-release heterolysis and homolysis enables rapid conversion of BCB into various synthons. |
Recently, Kerner and Wipf reported an alternative BCB activation strategy that involves a semi-pinacol rearrangement.75 In their approach, rearrangement of the BCB bridgehead group is triggered by a Brønsted or Lewis acid. This allowed the authors to generate ketones from BCB-alcohols. Aggarwal and co-workers have developed a series of conceptually similar reactions by using 1,2-boronate transfers (Scheme 7C).76 These reactions function by in situ formation of a BCB-pinacol boranate, 1,2-transfer, and functionalization by capture of an electrophile. Interestingly, subsequent studies found that alcohol nucleophiles can participate in these reactions to afford 1,1-disubstituted cyclobutanes.77
Aggarwal and co-workers, building on their related work with in situ generated BCB boronate complexes,76,77 demonstrated that these boronates can be efficiently attacked by electrophilic radicals. Indeed, BCB-containing boronate complexes undergo trifluoromethylation via bridgehead bond homolysis upon irradiation with blue LED light (Scheme 7D).81 Others have shown that more typical BCBs with electron-withdrawing bridgehead groups, such as esters or sulfones, can be attacked by stabilized α-amino radicals generated from decarboxylation of amino acids82 (Scheme 7E) or oxidative activation of methyl anilines.83 As part of their studies on the titanium-mediated reductive generation of radicals, Lin and co-workers demonstrated that tertiary alkyl radicals are capable of adding to sulfonyl-substituted BCBs.84 A mechanistically distinct homolytic addition reaction of BCBs was demonstrated by Gryko and co-workers (Scheme 7F).85 Their approach used a vitamin B12-derived cobalt catalyst to generate a carbon-centered radical from the 3-position of a sulfonyl BCB. This radical could be added to a Giese acceptor such as an acrylate, or captured by a nickel catalyst to be used in cross-coupling.
Recognizing this limitation, reports by Ma88 and Mykhailiuk89 expounded (Scheme 8) upon the known propensity of BCBs to engage in [2 + 1] reactions with carbenes, which was first demonstrated by Applequist in the 1970s and early 1980s.90 These recent studies demonstrated that difluorobicyclopentyl (F2-BCP) building blocks could be assembled from BCBs by way of a net [2 + 1] addition between difluorocarbene and the BCB bridgehead bond. Ma elected to use trimethylsilyl 2-fluorosulfonyl-2,2-difluoroacetate (TFDA) as the difluorocarbene precursor, whereas Mykhailiuk used the practical approach reported by Prakash and Hu (from TMS–CF3 and NaI).91 Both approaches suffered from the limitation of requiring an aryl group as one of the substituents on the BCB. However, Mykhailiuk showed that a vinylic BCB can be used to overcome this limitation and produce a bifunctional BCP reagent. Analysis of the structural facets of these F2-BCPs revealed that the distance between the quaternary centers was unaffected despite minor deviations in bond lengths and angles. In addition, inductive effects were noted that lead to enhanced acidification of the bridgehead carboxylic acid groups on the BCP (Scheme 8). Recently, Mykhailiuk has used a conceptually similar approach to prepare mono-fluoro BCPs via addition of bromofluorocarbene across BCBs followed by dehalogenation with RANEY® Ni.92 The concept of using BCBs to access other bioisosteric motifs is discussed more at length in Section 4.
In 2008, Walczak and Wipf expanded upon these precedents by investigating cycloisomerization reactions of BCBs with a pendant allyl group.93 These substrates underwent isomerizations to yield cyclopropane-fused pyrrolidines and azepines in good yield with high levels of stereo- and regiocontrol. The fate of the BCB was dictated by catalyst choice, with a [Rh()2Cl2]2/PPh3 system yielding pyrrolidinyl products whereas [Rh(CO)2Cl2]2/dppe gave azepanyl compounds. Wipf's report laid the groundwork for further developments, and also highlighted some of the opportunities and pitfalls of interfacing BCBs with other transition metals (i.e. the propensity for polymerization, ring expansion, and rearrangements).
In 2019, Aggarwal devised a clever approach to overcome these challenges to effect a net carboborylation of the BCB scaffold (Scheme 9, left).94 Formation of a BCB boronate complex from lithiated BCB and a pinacol boronate ester allowed the authors to engage the central bond in catalysis without risk of transmetallation. Using aryl triflates and a Pd(0) catalyst with 1,1′-bis(diisopropylphosphino)ferrocene (dippf) as a ligand enabled facile arylation of the central bond triggered by a 1,2-metallate rearrangement event. Reductive elimination yields an arylated cyclobutane product and regenerates the Pd(0) complex. Because the oxidative addition complex must approach from the BCB's exo face (owing to steric constraints from the pinacol group), excellent dr is observed, with the Bpin group residing trans to the aryl group. Aryl and heteroaryl triflates were utilized as electrophiles in this process, and the authors noted that it was critical to generate lithiated BCB from a BCB sulfoxide rather than from the more traditional Brinker approach (from 1,1-dibromo-2-(chloromethyl)cyclopropane).22
Scheme 9 Pd and Rh catalysis enables synthesis of complex architectures promoted by strain-release. LSF = late-stage functionalization. |
In 2021, Glorius and co-workers revisited how Rh can be used to facilitate strain-release functionalizations with BCB (Scheme 9, right).95 Rather than use a Rh(I) system, the authors explored how a Rh(III) catalyst would interact with the strained central bond of a BCB. The authors posited that a rhodacycle (formed by C–H activation) should be prone to ligation and subsequent insertion by the bridgehead bond of BCB to give a Rh-cyclobutyl species. This new complex should decompose via β-carbon elimination to give a homoallylic Rh species. The latter undergoes π-allyl complex formation via β-hydride elimination/reinsertion at the benzylic position. This species isomerizes to the corresponding σ-allyl intermediate, then engages ethyl glyoxylate in alkylation. This last step sets a quaternary center and, after protodemetalation, resets the catalytic cycle. Because of the chair-like transition state in the final C–C bond forming step, the process proceeds with excellent diastereoselectivity. A range of homoallylic alcohols could be prepared in this fashion.
In addition to developing a robust method for the synthesis of diverse aminocyclobutanes, Baran and co-workers explored the application of the BCB reagents in a biologically relevant setting.46 When probing the feasibility of peptide functionalization with the aryl sulfone BCBs, it was found that these reagents were not only tolerant of aqueous media and phosphate buffer, but also showed exquisite chemoselectivity by reacting with the cysteine thiol over other nucleophilic amino acids (Scheme 10A). This selectivity translated to more complex peptides, with exclusive Cys-labeling observed with the BCB reagent, even when in direct competition with other nucleophilic residues (e.g. Tyr, Lys).46 A similar approach to this was used by Zhang and co-workers for the radioiodination of peptides.96 This demonstration of modular reactivity, stability in aqueous buffer, and chemoselectivity of aryl sulfone BCBs showed promise for the utility of these motifs for use in biological settings, such as in the covalent modification of proteins.
There has been keen interest within the pharmaceutical industry for developing covalent inhibitors of proteins. From 2011 to 2019, the FDA approved 14 new small-molecule drugs whose mechanism of action utilizes covalent inhibition.97 The majority of these compounds employ a Michael acceptor (e.g. acrylamide) as the covalent warhead and, while there are some strategies to control the electrophilicity of this motif,98 medicinal chemists are continuously seeking the right balance of reactivity with the target protein and selectivity against other biomolecules.99
In 2020, Ojida and co-workers were the first to demonstrate that BCB carboxylic amides could be used as Cys-selective electrophiles for the covalent inhibition of proteins in live cells (Scheme 10A).100 To gain an initial understanding of the reactivity of strain-release reagents as a new class of covalent warheads, N-phenylacrylamide was benchmarked against the BCB matched pair by measuring the half-life (t1/2) of each species in the presence of glutathione (GSH) under physiological conditions (Scheme 10A). Under these conditions, the acrylamide had a t1/2 of 1.2 hours, while the BCB was substantially more stable with a t1/2 over 30 hours. The Ojida laboratory then synthesized an analog of ibrutinib, an approved inhibitor of Bruton's tyrosine kinase (BTK), wherein the typical acrylamide warhead was replaced with a BCB carboxylic amide (Scheme 10A). The in-cell reaction kinetics showed a >25× difference in initial reaction rate (V0) between the ibrutinib probe (15.6 × 10−2 min−1) and the BCB probe (0.58 × 10−2 min−1), results that correlated with the observed GSH reactivity. Additionally, the authors were able to further optimize the linker from the BCB carboxylic amide warhead to the ibrutinib pyrazolopyrimidine core, increasing the V0 to a more moderate rate of 5.07 × 10−2 min−1 and achieving a cellular IC50 of 180 nM against wild-type BTK (not shown). Using the BCB probes developed during the course of this work, the authors also performed a chemical proteomics study to understand the selectivity profile of the acrylamide and BCB warheads in the context of ibrutinib. When Ramos cells were treated with 1 μM of either warhead for 4 hours, the two warheads were found to have distinct proteome reactivity profiles. Overall, 113 proteins were enriched for the acrylamide probe whereas only 50 proteins were enriched for the BCB probe, suggesting that BCBs have less off-target reactivity in this example.
It is worth mentioning that while BCBs offer a complementary approach to current technologies for targeted covalent inhibition based on their tunable reactivity, they are relatively unique in that a new stereocenter is formed in the 1,3-substituted cyclobutane Cys-adduct (Scheme 11). In general, the stereochemical outcome of nucleophilic addition to a BCB with a bridgehead EWG through a polar mechanism is dependent on the identity of the EWG and the rate of protonation.69 In certain situations where the mechanism of the substitution proceeds through a radical pathway, neither the cis- or trans-isomer is favored, leading to an equal distribution of the diastereomers (e.g.Scheme 7F).85 However, the environment within a protein binding pocket may override any thermodynamic, kinetic, or mechanistic stereochemical preference of the covalent adduct. Instead, the final geometry of the covalent linkage should largely depend on the conformation of the Cys-residue and the bound configuration of the inhibitor, although other factors may play a role as well, such as sterics within the binding pocket and interactions (e.g. hydrogen bonding) with the bridgehead EWG. To the best of our knowledge, at the time of publication there have been no crystal structures of a protein covalently bound to a BCB reported in the literature. More work is required to fully understand how these strain-release reagents behave as covalent warheads.
In addition to the direct covalent functionalization of peptides and proteins, BCBs are being investigated for their potential applications in bioconjugation chemistry as novel strain-release reagents for cycloaddition reactions. Recently, Malins has developed a cycloaddition reaction between acyl BCBs and triazolinediones (TADs) conjugated to peptides (Scheme 10B).101 This approach builds upon related prior work by Amey102 and Dougherty.103 The reaction proved to be mild and robust, proceeding at room temperature and tolerating a variety of solvents (e.g. THF, DCM, PhMe) and residual moisture. Additionally, amide, ester, and ketone substituted BCBs performed similarly well in the reaction. A tripeptide-conjugated TAD also successfully underwent the cycloaddition reaction (30% yield over two steps), and the authors noted that the TAD building blocks should be amenable to on-resin peptide synthesis, allowing for the potential to further expand the complexity of the peptide motif. In addition to modular peptide synthesis, the acyl functional handle from the BCB provides an opportunity for further diversification and installation of probes (e.g., alkynes for “click” chemistry, fluorophores, etc.), making this cycloaddition reaction an exciting area for further development as a bioconjugation platform.
The recent efforts to expand the use of BCBs in medicinal chemistry and pharmaceutical development have only begun to appear in the patent literature, with only a handful of compounds disclosed (Scheme 10C). In 2017, Wipf and co-workers disclosed a di-bridgehead substituted BCB in their work towards identifying small molecules that inhibit the nuclear translocation of the androgen receptor.104 Orexia Therapeutics filed a patent for orexin-2 receptor (OX2R) agonists for the treatment of narcolepsy that contained several structures with BCBs.105 These included a BCB bearing a bridgehead fluorine and a BCB carboxylic amide with a human OX2R pEC50 between 8 and 9, although the latter motif was not specified to be acting in a covalent manner. Erasca has patented a BCB carboxylic amide as the covalent warhead for a KRAS G12C inhibitor.106 As the KRAS G12C inhibitor patent space is highly congested, this last example highlights the importance of increasing the diversity of the building blocks used in drug development. BCBs and other small, strained carbocycles offer promise for not only generating new intellectual property, but also their increased Fsp3 and spatial geometry may impart benefits such as improved physicochemical properties and the ability to access novel chemical space.107 While initial intuition may suggest that the high strain energy of BCBs (vide supra) makes them incompatible with physiological conditions, this review has outlined numerous examples of BCBs that react with high chemoselectivity, and that do not require stringent air- and moisture-free conditions to store and handle. There is currently a small selection of commercially available bridgehead substituted BCB building blocks, including a sulfonyl arene, carboxylate, and boronic ester (Scheme 10D), that could easily integrate into routinely performed medicinal chemistry reactions or a parallel library workflow. With the complexity of functional groups and substitution patterns accessible on the BCB scaffold continually growing based on new methodology development, BCBs have the potential to move beyond a chemical curiosity to a versatile building block.
Recently, the bicyclo[2.1.1]hexyl (BCH) group has been identified as an isosteric replacement for ortho- and meta-substituted benzenes.111 However, due to its unusual architecture, limited approaches are available to construct substituted BCHs. In principle, the fastest route to BCHs would be a [2 + 2] cycloaddition reaction between an olefin and the bridgehead bond of a BCB, but this transformation is not facile under traditional thermally-driven conditions. Very recently, near simultaneous reports by Procter112 and Glorius113 demonstrated two distinct approaches to addressing this synthetic impasse (Scheme 12, left). In Procter's report, a SmI2-catalysed radical relay process is employed to access a wide array of BCHs from the union of BCBs and olefins.112 The crux of this process is single electron reduction of a BCB ketone to generate a ketyl radical, which undergoes rapid ring opening. The resulting cyclobutyl radical can engage in Giese-type addition with an olefin. The resulting Giese adduct radical is well-positioned for a 5-exo-trig cyclization, reforming a ketyl radical. Regeneration of the carbonyl via back-electron transfer yields a carbonyl substituted BCH and the Sm(II) catalyst. Both the carbonyl group and the olefinic partner can be varied and the process tolerates a high degree of complexity. The authors later demonstrate a direct isosteric replacement of an ortho-substituted arene in phthalylsulfathiazole, a broad-spectrum antimicrobial agent.
Glorius's approach relies on visible light to enable BCH construction by way of a [2π + 2σ]-photocycloaddition between olefins and BCBs.113 Photochemical cyclobutane synthesis via [2 + 2] cycloaddition is well-documented and proceeds with excellent stereochemical control both intra- and intermolecularly.114 However, use of a saturated system as one of the cycloaddition partners (i.e., using a σ bond) is more challenging. This may be in part due to the necessity to employ harsh UV irradiation when using non-polarized systems to facilitate cycloaddition. By using a triplet sensitizer (a thioxanthone, TXT) as a means to execute an energy transfer (EnT) process, Glorius and co-workers could effectively engage olefins with monosubstituted BCBs to produce BCH products under mild visible light irradiation. BCBs bearing functional handles such as Weinreb amides and boryl groups are well-tolerated in the described photochemical process, enabling BCH building blocks to be accessed. An isoxazoline partner can also be used to access polycyclic saturated heterocycles. DFT calculations conducted by the authors explained the regiochemical outcome, showing that a stepwise process with radical–radical recombination in the final mechanistic step was occurring.
Very recently, Brown and co-workers disclosed a related report where a naphthyl ketone is used as an “antenna” on the BCB itself.115 This allowed for visible light-induced formation of a triplet cyclobutyl diradical. Brown's approach allows a much wider array of olefin coupling partners, as this triplet cyclobutyl diradical can be captured by various alkenes. A final radical–radical recombination, as in Glorius's report, yields the BCH target.
To move beyond strictly carbocyclic isosteres (whose benefits of higher Csp3 may be countered by their high clogP), Leitch and co-workers explored if BCBs could be progenitors to 2-azabicyclo[2.1.1]hexanes (aza-BCHs) through a reaction with imines (Scheme 13).116 This hypothesis expands on the reports in the early 1980s by Amey and Dougherty,102,103 as well as the more recent work of Lu,27 who found that BCBs undergo strain-relieving cycloadditions upon irradiation with 1,2,4-triazoline-3,5-diones. The latter have been recently been popularized by Sarlah for dearomative cycloaddition reactions and utilized for the aforementioned bioconjugation reported by Malins.101,117 In contrast, this recent approach by Leitch uses a formal [3 + 2] cycloaddition using a BCB in which the central bond is polarized to give zwitterionic character, mimicking the well-known reactivity of donor–acceptor cyclopropanes.118 Lewis acids were used to induce enolate formation (and carbocation generation). From there, enolate attack (with potential aid by Lewis acid activation of the imine) yields an intermediate that undergoes ring closure. One challenge associated with any process proceeding through carbocations is the potential for E1 type elimination, and indeed, cyclobutene formation was observed by Leitch. The authors capitalized on this alternative pathway by devising conditions to exclusively form aza-BCHs or substituted cyclobutenes. Reaction temperature, the substitution pattern of the nitrogen on the imine, and the nature of the EWG all impacted the product distribution. As a means to overcome some of the architectural restrictions of their process, the authors demonstrated that cyclobutenes could be converted to aza-BCHs by way of an iodine-mediated intramolecular cyclization.
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