Maksim
Kunitski
a,
Christoph
Riehn
b,
Victor V.
Matylitsky
a,
Pilarisetty
Tarakeshwar
*c and
Bernhard
Brutschy
*a
aInstitut für Physikalische und Theoretische Chemie, Goethe-Universität Frankfurt am Main, Max-von-Laue-Straße 760438 Frankfurt am Main, Germany. E-mail: brutschy@chemie.uni-frankfurt.de; Fax: +49 (0)69 798 29560; Tel: +49 (0)69 798 29424
bDepartment of Chemistry, Technische Universität Kaiserslautern, Erwin-Schrödinger-Straße 52, 67663 Kaiserslautern, Germany
cDepartment of Chemistry, University of Nevada Las Vegas, 4505 Maryland Parkway, Las Vegas, NV 89154, USA. E-mail: tarakesh@unlv.nevada.edu
First published on 9th November 2009
Pseudorotation in the pyrrolidine molecule was studied by means of femtosecond degenerate four-wave mixing spectroscopy both in the gas cell at room temperature and under supersonic expansion. The experimental observations were reproduced by a fitted simulation based on a one-dimensional model for pseudorotation. Of the two conformers, axial and equatorial, the latter was found to be stabilized by about 29 ± 10 cm−1 relative to the former one. The barrier for pseudorotation was determined to be 220 ± 20 cm−1. In addition, quantum chemical calculations of the pseudorotational path of pyrrolidine were performed using the synchronous transit-guided quasi-Newton method at the MP2 and B3LYP levels of theory. Subsequent CCSD(T) calculations yield the energy preference of the equatorial conformer and the barrier for pseudorotation to be 17 and 284 cm−1, respectively.
PR is an inherent property of saturated five-membered rings. It is an out-of-plane ring-puckering vibration that causes the ring atoms to move in such a way that the phase of the puckering rotates around the ring. Since it is a periodic motion it is convenient to use an angle (ϕ) as the pseudorotational coordinate. An important aspect of PR is that it represents a lower energy path between molecular conformations as compared to ring inversion.6 This is illustrated in Fig. 1 at the example of the pyrrolidine molecule. PR plays an important role in a wide range of biomolecules such as the deoxyribose/ribose of DNA/RNA,7 the amino acid proline, nicotine and numerous drugs containing the 5-membered thiazolidine ring, such as penicillin. For instance a recent study has shown that the side-chain flexibility of the proline residue, which largely arises from PR, is coupled to the backbone conformation of a protein.8
Fig. 1 Two ways of interconversion of the axial (ϕ = 0°) and equatorial (ϕ = 180°) conformers of pyrrolidine: pseudorotation (green, <300 cm−1) and ring inversion (red, ∼1500 cm−1).6 |
Pyrrolidine (PYR) was chosen as an archetypical system for studying PR since it is an essential component of several biologically important molecules and the relatively sparse experimental information available about PR in this molecule.
Several experimental techniques have been utilized for studying ring-puckering vibration and PR.1,2 Vibrational spectroscopy1 is used to investigate energetical but not structural aspects of PR. Concerning PYR, however, only one vibrational mode corresponding to PR was reported so far, but it was not sufficient for gaining information about the energetics of PR in this molecule.9,10 Nuclear magnetic resonance11 and electron diffraction (ED)11,12 enable the determination of energetic preferences and structures of lower pseudorotational states, however, information about the complete pseudorotational potential usually remains beyond their scope. The gas-phase ED study of the conformational preferences in pyrrolidine in conjunction with ab initio calculations indicated that the axial conformer is energetically the most stable one,13 an assignment which was revised later by microwave spectroscopy.14 However it was conceded that the signal intensity was not very sensitive to the conformation.13 Microwave spectroscopy (MW) is a straightforward approach for precise determination of both potential energy and structural changes along a pseudorotational pathway15,16 but is not suitable for molecules lacking or possessing a small dipole moment. This was the reason why the equatorial conformer of PYR was not observed in early microwave investigations17 and as a consequence, the axial conformer was assumed to be the most stable structure. Only later under better cooling conditions in a free jet experiment the equatorial conformer turned out to be the most stable structure.14,18 The energy difference between the axial and equatorial minima was estimated to be lower than 220 cm−1.14
High resolution rotationally resolved infrared spectroscopy was shown to be applicable for studing ring puckering in four-membered ring compounds.19–21 The assignment of the spectra however is not an easy task, mainly due to their congestion. To the best of our knowledge, no high resolution infrared spectra of molecules undergoing PR have been reported so far. Recently single molecule vibrational spectroscopy22 was exploited for studying a pyrrolidine molecule attached to the Ag(001) surface at a temperature of 9 K. The frequency of 298 cm−1 was reported and assigned to the barrier for PR. This mode however may be also attributed to ring inversion, as shown in several other vibrational studies.6,9,10
In a recent theoretical study on PYR Carballeira et al.6 revised the previous findings23 and showed that the calculated energy difference between the axial and equatorial conformers strongly depends both on the quantum chemistry method and the basis set. The pseudorotational path of pyrrolidine was also modeled by constrained optimization of several points along the pseudorotational path. Subsequent single point calculations yielded the energy barrier for pseudorotation of 248 cm−1 at MP2 and 236 cm−1 at B3LYP levels of theory with the 6-311++G(3df,3pd) basis set. It was also stated that explicit inclusion of electron correlation and zero-point energies corrections would lower the estimated barrier for PR down to 150 cm−1. The barrier to ring inversion was estimated to be around 1500 cm−1.
Femtosecond degenerate four-wave mixing (fs DFWM), an ultrafast pump–probe laser technique, enables in its many different implementations to study different kinds of molecular dynamics.24–27 In the scheme utilized in rotational coherence spectroscopy, which is used in the present study, fs DFWM allows for the time-domain observation of the coherent rotation of a molecular ensemble. Being a Raman type spectroscopy, fs DFWM has proven to be a powerful tool for investigating the structure of large molecular systems at thermal equilibrium, even if they do not possess a permanent dipole moment.28,29 Recently fs DFWM was applied to obtain accurate rotational constants for several lower vibrational states of cyclobutane30 and cyclooctatetraene.31
In this work fs DFWM spectroscopy was applied for the first time to study such a large amplitude intramolecular motion as PR at example of the pyrrolidine molecule. The interpretation of the experimental fs DFWM spectra was done by means of the simulation based on a one-dimensional quantum mechanical model for PR. This allowed for determination of the energy potential and the rotational constants along the pseudorotational path. The experimental findings were additionally supplemented by unrestrained high level quantum chemistry calculations.
The paper is organized as follows. We initially discuss the theoretical background of PR in five-membered ring compounds. Than follows the description of experimental details, the simulation procedure and the quantum chemical methods utilized in the current work. Subsequently we discuss the results.
(1) |
The Hamiltonian (1) may also be written in polar coordinates in the way that the radial coordinate expresses the amplitude of the ring puckering and the angular coordinate relates to the puckering phase. While the motion in the radial coordinate is nothing else than ring inversion, the puckering phase motion was termed pseudorotation.4,32 In PYR the barrier for inversion through the planar ring is much higher than the barrier for PR.6 Therefore, the puckering amplitude mode can be separated from the puckering phase mode. Then, PR alone can be described with the following one-dimensional Hamiltonian:32
H(ϕ) = BpP2ϕ + V(ϕ) | (2) |
(3) |
Fig. 2 The envelope structures of pyrrolidine and the corresponding pseudorotational angles ϕ. In all these structures four atoms of the ring are in one plane, while the fifth one (indicated by a red arrow) is not. This pucker rotates around the ring during pseudorotation. |
The solution of the Schrödinger equation that corresponds to Hamiltonian (2) can be numerically obtained in the free rotor basis set.34 For this purpose the potential V(ϕ) can be parameterized in the following way:
(4) |
(5) |
(6) |
Fig. 3 Top: Pseudorotational potential and corresponding levels with their relative Boltzmann populations at temperatures of 68 K (a) and 298 K (b). Bottom: The probability density functions of the first six pseudorotational levels. The parity of levels is shown by red (even) and blue (odd) colors. The levels above 300 cm−1 are doubly degenerated. |
These two limiting cases can be illustrated by considering a potential with a barrier height of 220 cm−1 and the energy difference between the axial and equatorial conformers of 29 cm−1 (these values will be obtained below from the fitted simulation of the room-temperature fs DFWM spectrum of PYR, see Table 2). The calculated pseudorotational energy levels and their populations at two temperatures 68 K and 298 K are shown on the top of Fig. 3. On the bottom the probability density functions of the first six pseudorotational states are depicted. As one can see the higher the state the more delocalized is the molecule on the pseudorotational path. Thus at low temperatures (about 68 K and below) only the structures close to 0° and 180° will be observed in experiment. With increase of the temperature more and more conformations along the pseudorotational path will contribute to the spectrum.
A fs DFWM spectrum of a mixture of several species or of one species with several low-frequency vibrations may be constructed as a coherent superposition of the individual contributions with certain weights, which in the latter case correspond to the Boltzmann populations of the vibrational states.26,30,31
As was already mentioned, pseudorotation causes significant changes in the molecular structure and therefore the rotation of the molecule cannot be described within the scope of a semirigid rotor approximation. In order to consider pseudorotation in the simulation each pseudorotational level is considered as a single species with its own set of averaged molecular properties such as rotational constants, polarizability, centrifugal distortion constants. Thus the complete simulation procedure consists of the following steps. First the pseudorotational levels are calculated relying on the pseudorotational potential and the kinetic term constant Bp. Next the expectation values of the rotational constants, centrifugal distortion constants and polarizability parameter φ are evaluated using eqn (5). With these data the fs DFWM spectra are generated for each pseudorotational state in the way as for a single species using a semirigid rotor approximation. A coherent superposition of all individual fs DFWM spectra weighted by the Boltzmann population of the corresponding pseudorotational levels yields the complete fs DFWM spectrum.
The above discussion is not limited to the case of PR, but may be applicable to other kinds of intramolecular motions such as ring-puckering in four-membered ring compounds or rotation around a central bond in n-butane-like molecules. For further details see Supp. Inf.
Fig. 4 The experimental fs DFWM spectrum (red) of PYR at room temperature (298 K) and the fitted simulation (blue) using the one-dimensional model for PR. The magnification factor of some weak recurrences is given. |
Fig. 5 The experimental fs DFWM spectrum (red) of PYR measured under supersonic expansion and the fitted simulations: green—using only 2 conformers, blue—using the pseudorotational model with parameters taken from the fit of the room-temperature spectrum. The magnification factor of some weak recurrences is given. |
One can clearly see that the supersonic jet spectrum (Fig. 5) contains a permanent signal component, which results in the negative signal modulations (relative to the background level). This occurs at higher laser intensity, which had to be employed to increase the signal under the conditions of the supersonic expansion. A very small permanent signal component is present in the cell spectrum as well. This can be recognized on the late recurrences, which are of rather small intensity (Fig. 4, ×20 and ×40). It can be explained by non-linear field effects, formation of an ion grating or a plasma and additional scattering thereof.40,41 In the first approximation these high field effect can be satisfactorily described by means of a local field oscillator,28,42 which was also included in the simulation procedure.28
The shapes of the rotational recurrences of the experimental spectra appear to be much more complex than those of a single rigid molecule. Therefore the first attempt to explain the experimental observations was based on the assumption that the spectra result from a mixture of two conformers, axial and equatorial, as identified in previous studies.6,13,14,17 As shown in Fig. 5 (green) the spectrum measured under supersonic expansion conditions can be satisfactorily fitted with two structures. The obtained rotational constants A and B (Table 1) are in good agreement (within their error bars) with the ones assigned to the axial and equatorial conformers in previous MW studies.14,17,18 Since PYR is a nearly oblate top, the fs DFWM signal is only slightly sensitive to the rotational constant C. Therefore, this constant was fixed in all fits.
Supersonic expansiona | Cellb | MW spectroscopy18 | ||||
---|---|---|---|---|---|---|
eq | ax | eq | ax | eq | ax | |
a Fitted using two conformers. b Fitted using the pseudorotational model; the equatorial and axial conformers correspond to the first and second pseudorotational levels (see Fig. 3). c Fixed in the fit. d Calculation based on the obtained pseudorotational potential. | ||||||
A/GHz | 6.864(5) | 6.837(5) | 6.866(4) | 6.835(4) | 6.864704(6) | 6.834536(8) |
B/GHz | 6.788(5) | 6.680(5) | 6.787(4) | 6.682(4) | 6.791908(5) | 6.677856(8) |
C/GHz | 3.9004c | 3.888062c | 3.895c | 3.895c | 3.9004(42) | 3.888062(8) |
Rotational T/K | 66(9) | 298c | 10 | |||
Relative population (ax/eq) | 1.6(3) | 0.9d | <1.0 |
However, the two conformers fit yields one inconsistency, namely, that the axial conformer has a greater contribution to the simulated spectrum than the equatorial one (Table 1). This indicates an energetic preference of the axial conformer over the equatorial one, which is in qualitative disagreement to the assignment reported in the literature.14
The room temperature spectrum of pyrrolidine can in no way be reproduced by a simulation using only the axial and equatorial conformers (Fig. 6). As was discussed above this is evidence that the barrier for pseudorotation is not very high-presumably below 1000 cm−1—since the signals of more than two structures are superimposed in the room temperature spectrum.
Fig. 6 The first four recurrences of fs DFWM spectrum of pyrrolidine at room temperature: red—experimental, green-fitted simulation by only two conformers: axial and equatorial, the rotational constants are taken from microwave spectroscopy.18 |
Fig. 7 Potential energy of PR: calculated using aug-cc-pVDZ at B3LYP (blue) and MP2 (green squares). The MP2/aug-cc-pVTZ calculations are shown by green circles. Single point CCSD(T)/aug-cc-pVTZ calculations on the MP2/aug-cc-pVTZ geometries are shown by black crosses. The potential obtained from the fitted simulation of the fs DFWM cell spectrum at room temperature is plotted in red. The structures shown are those optimized at the B3LYP level. |
However, since the size of the basis set was found to be crucial for the energy calculation,6 we have determined the energy difference between axial and equatorial conformers at different basis sets and levels of theory (see Table 2, Fig. S2 of ESI†).
ϕ max/° | V max/cm−1 | ΔVax–eq/cm−1 | |
---|---|---|---|
a Single point calculations on geometries optimized at MP2/aug-cc-pVTZ. | |||
Fitted simulation | 94.5(2) | 220(20) | 29(10) |
B3LYP/aug-cc-pVDZ | 94 | 318 | 61 |
MP2/aug-cc-pVDZ | 104 | 307 | 55 |
MP2/aug-cc-pVTZ | 112 | 288 | 72 |
MP2/aug-cc-pVQZ | — | — | 84 |
CCSD(T)/aug-cc-pVDZ | — | — | 7 |
CCSD(T)/aug-cc-pVTZa | 112a | 284 | 17 |
The MP2 calculations with larger basis sets progressively favor the equatorial form, converging at a value of about 90 cm−1 (Fig. S2 of the ESI†). The CCSD(T) optimization with the aug-cc-pVDZ basis set indicates a significantly smaller stabilization (only by 7 cm−1) of the equatorial conformer over the axial one. This energetic preference becames 17 cm−1 at single point CCSD(T)/aug-cc-pVTZ calculations, carried out on the MP2/aug-cc-pVTZ geometries.
According to the MP2 calculations with the aug-cc-pVDZ basis set (Fig. 7), the energy minimum on the left side of the barrier does not corresponds to the axial form (0°, Cs symmetry, envelope), but rather to the pseudorotational angle of 18° (C1 symmetry, twist). This outcome of the MP2 calculations was also reported by Carballeira et al.6 This is not the case when larger basis sets are used (Fig. S2 of the ESI,† starting from aug-cc-pCVTZ), giving the left minimum to be exactly at the pseudorotational angle of 0°. However the lowest frequency of 16 cm−1 indicates that this minimum is rather flat.
The calculated rotational constants A and B are shown in Fig. 8. They are systematically lower than those obtained in MW studies. Thus, both theoretical methods, MP2 and B3LYP, overestimate the bond lengths at the aug-cc-pVDZ basis set. An enlargement of the basis set increases the magnitude of rotational constants, whereas consideration of higher order correlation and anharmonic effects in calculations tends to decrease it (see Table S2 of the ESI† and ref. 44). Thus, one can expect a better agreement between calculated and experimental values when larger basis sets are used and higher order correlation along with anharmonic effects are taken into account.
Fig. 8 Rotational constants A and B of PYR as functions of the pseudorotational angle ϕ: calculated at B3LYP/aug-cc-pVDZ (blue) and MP2/aug-cc-pVDZ (green); obtained from the fitted simulation of the fs DFWM cell spectrum at room temperature (red). MW values for the axial and equatorial conformers18 are shown with black crosses (at ϕ = 0° and ϕ = 180°). |
Additionally we calculated the barrier for ring inversion (the structure with a planar ring) using the aug-cc-pVDZ basis set at the B3LYP and MP2 levels of theory. The calculations yield the values of 1422 cm−1 (B3LYP) and 1634 cm−1 (MP2). These results are in agreement with those reported by Carballeira et al.6 Thus the barrier for ring inversion in PYR is indeed about five times larger than that for PR.
The energetical preference of the equatorial form over the axial one, though being small, could be understood in terms of two electronic effects: steric repulsion and hyperconjugation stabilization. It is however difficult to determine which of these two effects has the greater contribution. Natural bond orbital analysis on the HF/6-31G** wavefunctions23 showed that the hyperconjugation interactions were greater than steric repulsion in the equatorial conformer of PYR, what consequently favored this conformer over the axial one. We also believe that the nitrogen lone pair plays an important role in the stabilization of the equatorial conformer because SCRF calculations of PYR carried out in the presence of polar solvent like water reverses the energetical order of the conformers (see Fig. S3 of the ESI).† Additionally, the enhanced dipole moment of the axial conformer as compared to the equatorial one can also explain its lower energy in polar solutions.
The fitted simulation yields the pseudorotational barrier height of 220 cm−1, which is lower by about 100 cm−1 than that derived from the calculations with the aug-cc-pVDZ basis set at the MP2 and B3LYP levels of theory. This discrepancy however becomes smaller (64 cm−1) when the MP2 method with a larger basis set, aug-cc-pVTZ, is used. The twisted conformation at the pseudorotational angle of about 94° was found to have the highest energy on the pseudorotational path. This value is very close to the one obtained in the calculation at the B3LYP level of theory.
It should be pointed out that the barrier for PR in PYR is higher than that in analogous five-membered saturated ring compounds such as cyclopentane (CYC, <25 cm−1)45 and tetrahydrofuran (THF, ∼30 cm−1).46 This difference is related to the subtle interplay of steric repulsion and hyperconjugation, whose contributions depend sensitively on the individual molecular structure and electronic configuration. Thus, we cannot give a simple explanation for this observation. The ongoing debate on the origin of the torsional barrier of ethane demonstrates that this analysis is a demanding task.47,48
The pseudorotational constant Bp was found to be 3.8 ± 0.1 cm−1, which is also higher than those reported for CYC (2.9 cm−1)45 and THF(3.2 cm−1).46
The fitted rotational constants A and B as functions of the pseudorotational coordinate are presented in Fig. 8. They show a similar dependence on the pseudorotational angle as the calculated ones, especially those of the MP2 level of theory, being however systematically shifted to higher values. The rotational constant C was fixed in the fit to the value of 3.895GHz (see the ESI)† since, as was stated above, its influence on the fs DFWM spectrum of PYR was found to be insignificant.
Using the fitted parameters we calculated the average values of rotational constants for the first two pseudorotational states, which correspond to the equatorial and axial conformers (see Fig. 3). These constants are collected in Table 1. They are in good agreement with the values obtained from the two-structure-fit of the spectrum measured under supersonic expansion and also close to those of previous MW studies.18
Next we checked whether the simulation based on the pseudorotational model can reproduce the experimental fs DFWM spectrum measured under supersonic expansion. All parameters required for the simulation, with the exception of the vibrational and rotational temperatures, were taken from the fit of the room-temperature spectrum. The resulting fitted simulation is shown in Fig. 5 (blue). Although the root mean-square deviation (chi-square) of this fit is higher than that using only two conformers (Fig. 5, green), the agreement with the experimental spectrum is still good. Moreover, the energetic preference of the equatorial conformer, as follows from the obtained pseudorotational potential (Fig. 7, red), is consistent with the finding of MW spectroscopy.14 This was not the case when only two structures have been considered (Table 1). From the fitted simulation the rotational and vibrational temperatures under supersonic expansion were found to be roughly the same and equal to about 68 K. This is very close to the value of 66 K obtained in the foregoing two-structure-fit (Table 1).
Thus, the invoked model for PR in PYR supported by ab initio calculations was successfully applied to the analysis and simulation of the experimental fs DFWM transients measured in a supersonic exspansion and in a gas cell.
Thus we have with fs DFWM a method at hand that allows for the analysis of conformational transformations of molecules possessing no dipole moment even under the spectroscopically often inaccessible condition of a high temperature equilibrium. The method outlined here may be applied in addition to PR for studying the wide range of large amplitude intramolecular motions, such as the puckering inversion in four-membered rings or the internal rotation along the central bond in bithiophene- and n-butane-like molecules.
Footnote |
† Electronic supplementary information (ESI) available: A flash movie with pseudorotation in pyrrolidine; further details on the fitted simulation of the fs DFWM spectrum; calculated dependences of the maximum pseudorotational amplitude q on the pseudorotational angle ϕ; the energy difference between the axial and equatorial conformers of pyrrolidine calculated with different methods and basis sets; the experimental and calculated rotational constants of the axial and equatorial conformers of pyrrolidine; SCRF calculations of the pseudorotational pathway of pyrrolidine. See DOI: 10.1039/b917362e |
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