Gui-lin
Zhuang
a,
Li
Tan
a,
Wu-lin
Chen
ac,
Jun
Zheng
b,
Hong-zhou
Yao
a,
Xing
Zhong
a and
Jian-guo
Wang
*a
aInstitute of Industrial Catalysis, College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, 310032, People's Republic of China. E-mail: jgw@zjut.edu.cn; Fax: (+86)571-88871037; Tel: (+86)571-88871037
bCenter of Modern Experimental Technology, Anhui University, Hefei, 230039, People's Republic of China
cZhejiang Engineering Design Co., Ltd, Hangzhou, People's Republic of China
First published on 17th June 2014
A series of bio-analogous peptide-based metal–organic frameworks (Mn(1), Fe(2), Co(3), Cu(4), Ag(5) and Pb(6)) based on one cyclic dipeptide (2,5-piperazinedione-1,4-diacetic acid, H2PODC) were obtained and the relationships between properties (luminescence and magnetism) and structure was investigated. Crystal structure analysis shows that (1) 1–3 feature a three-dimensional isomorphic framework; (2) 4 shows one two-dimensional plane structure; (3) 5 shows a three-dimensional framework with one alternate Ag–Ag chain (dAg–Ag = 2.7918 and 2.9346 Å); (4) 6 indicates a three-dimensional structure with one dimensional 7.0 × 7.0 Å2 channel. Combination of magnetic measures and quantum Monte Carlo (QMC) studies reveals that 1 has anti-ferromagnetic properties with a J of −0.5 cm−1 and 4 exhibits ferromagnetic properties with a J of 2.23 cm−1, while both 2 and 3 show ferrimagnetic properties. Spin polarized density functional theory (DFT) calculations uncover that antiferromagnetism of 1 is attributed to the coupling of paramagnetic Mn(II) ions by −/−/+ spin nets of linking carboxylate, while in 4 ferromagnetic superexchange of Cu(II) ions is derived from the spin polarization effect through the carboxylate bridge in the +/+/+ spin nets of linking carboxylates. Furthermore, DFT calculation results show that two absorption peaks of 5 should be attributed to the transitions of the valence band (VB)→ the second empty band and VB→ the conduction band (CB), and one emission peak is the result of the CB→VB transition, where the electrons transfer from the Ag–Ag metal bond to localized 4d orbitals of Ag atoms.
Moreover, accurate design of materials relies on the information regarding connection between the structure and the properties. Therefore, investigations of the structure-to-function relationship have been an important and challenging topic in the field of MOFs. In this regard, experimental views alone are insufficient to produce the profound comprehension. Currently, combination of theoretical calculations and experimental studies has become an effective tool. Various theoretical simulation methods, including DFT,15 Monte Carlo (MC),16 and molecular dynamics (MD),17 have been widely applied to forecast or explain the interesting experimental phenomena of MOFs. However, to the best of our knowledge, the corresponding studies regarding the structure-to-function relationship of peptide-based MOFs have never been reported.
In this article, we report the synthesis and structure of a series of new peptide-based MOFs, and focus on their magnetic and luminescence properties. Furthermore, via QMC and DFT calculations, we investigated the magnetism–structure and luminescence–structure relationships.
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Fig. 1 (a) ORTEP plot showing the coordination environment of Mn(II) ions; the two-dimensional structure of 1 viewed along the a axis (b) and the topology sketch map of 1 (c). |
Moreover, both 2 and 3 exhibit three-dimensional frameworks with 1. The bond lengths of Fe(II)–O and Co(II)–O are 2.0689(11)–2.1501(13) and 2.0739(10)–2.1095(12) Å, respectively. Additionally, the distance of Fe⋯Fe and Co⋯Co is 6.028 and 6.025 Å, respectively. Generally, these bond distances are slightly smaller than that of 1.
In contrast to compounds 1–3, crystal structure analysis reveals that compound 4 displays a two-dimensional plane structure with the space group C2/c. As is clear from Fig. 2(a), the asymmetric unit of 4 consists of a half Cu(II) ion, a half PODC2− ligand and one aqua ligand. Like 1–3, the coordination configuration of the Cu(II) ion can be described as a distorted octahedron, featuring the coordination by four carboxylate oxygen atoms from PODC2− ligands and two aqua ligands. The resulting bond lengths of Cu–O are 1.9501(14)–1.9573(15) Å, within the expected range reported for Cu(II)-based compounds.20 The PODC2− ligand exhibits the same coordination mode as that of 1. Via syn–anti carboxylate bridges, each Cu(II) ion connects with neighboring ones, resulting in 1D {Cu(COO)}n chains. Furthermore, each chain is linked to the adjacent ones by PODC2− ligands so as to generate the 44-net 2D plane structure, as shown in Fig. 2(b). The 3D supramolecular architecture can be seen as 2D layers linked by a weak interaction force, e.g. van der Waals force.
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Fig. 2 (a) ORTEP plot showing the coordination environment of Cu(II) ions; (b) two-dimensional topology sketch map of compound 4 viewed along the a axis. |
Compound 5 crystallized in the monoclinic system with the P2(1)/n space group. Analysis of the single-crystal diffraction data indicates that the asymmetric unit of 5 contains one Ag(I) ion and a half PODC2− ligand. As shown in Fig. 3(a), the Ag(I) ion is a quad-coordinated tetrahedron with two carboxylate O atoms and two carbonyl O atoms from four PODC2− ligands. The corresponding bond lengths of the Ag–O bond are 2.184(4)–2.8003(39) Å, in agreement with those of quad-coordinated Ag(I).21 Interestingly, the PODC2− ligand exhibits a different coordination mode from those of 1–4, where both carboxylate and carbonyl oxygen atoms participate in coordinating to Ag(I) ions, as shown in Fig. S3(b).† Each Ag(I) ion connects with another Ag(I) ion via two carbonyl oxygen atoms and one μ2:η1,η2-carboxylate to generate a {Ag2} unit, as shown in Fig. 3(b). Along the a axis, connection of two adjacent ones through two μ2:η1,η2-carboxylates results in a 1D {AgO(COO)}n chain, which further forms a 3D structure by the use of two opposite carboxylates and carbonyls of the PODC2− ligand, as shown in Fig. 3(c and d). The short Schläfli vertex notation of the net can be described as {414·6}2{444·622}, as calculated by the TOPOS software.19 It must be mentioned that two different Ag–Ag metal bonds (dAg–Ag = 2.7918 and 2.9346 Å) appear in 5.
The single-crystal X-ray diffraction analysis shows that compound 6 crystallized in triclinic symmetry with the space group P. In the asymmetric unit, there is one crystallographically independent Pb(II) ion, one PODC2− ligand, one aqua ligand and four guest water molecules. As shown in Fig. 4(a), the coordination environment of the Pb(II) ion features the contributions of six carboxylate oxygen atoms, one carbonyl oxygen and one aqua ligand. The corresponding bond lengths of Pb–O are 2.479(2)–2.9557(45) Å, comparable to those in previously reported compounds.22 In 6, the PODC2− ligand exhibits two different coordination modes (see Fig. S3(c and d)†). The 3D structure of 6 can be described as follows: (1) through the carboxylates, each Pb(II) ion connects with the adjacent ones along the a axis to form the 1D {Pb(COO)}n chain, as shown in Fig. 4(b); (2) each chain further links each other along b and c axes by the use of two opposite carboxylates and carbonyl of the PODC2− ligand, as depicted in Fig. 4(c) and (d). The topology symbol is {44·62}{46·64}2{48·66·8}, as indicated by the TOPOS software.19 Notably, the channel of 7.0 × 7.0 Å2 size along the a axis was observed in 6, as displayed in the space filing view of Fig. S4.† Three guest water molecules in one unit-cell are enveloped in the channels. Interestingly, they display different dissociative temperatures (see Fig. S5†). Additionally, the pore volume calculated through the PLATON program is approximately 250.4 Å3 per unit cell volume (32.5%).
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Fig. 5 Experiment plot of χmT vs. T of 1 (black ○, 2 (red □), 3 (blue ◊); QMC fitting line (solid line) of 1. |
In order to identify the magnetic exchange interactions of 1, the fitting to the plot of χMT vs. T with the given model was performed. As shown in Fig. S8(a) and (b),† magnetic coupling of 1 can be attributed to the interaction between two Mn(II) ions. However, due to periodic characteristics, the fitting based on the well-known irreducible tensor operator method is impossible. Based on the Hamilton operator as shown in Fig. S8(c),† therefore, we herein applied our QMC fitting program (see ESI†), which invokes the LOOP module of the ALPS project.25 The coupling parameter J is utilized to describe the role of the syn–anti carboxylate bridge between two adjacent Mn(II) ions. The weak interaction (zJ) constant,26 which has the capability of describing the interaction of the hydrogen bonds between two 2D layer frameworks, was also taken into account. According to the principle of the least reliability factor R (see Fig. S8(d)†), the best parameters obtained are J = −0.5 cm−1, zJ = −0.10 cm−1, g = 1.99 and R = 8.1 × 10−5, where R is calculated from ∑[(χMT)obs − (χMT)calcd]2/∑[(χMT)obs]2. The small value (−0.50 cm−1) of J reveals a weak antiferromagnetic propagation pathway of the syn–anti carboxylate bridge. The zJ value of −0.10 cm−1 also displays a weak antiferromagnetic coupling between two layers, owing to the effect of the weak-interaction (e.g. hydrogen bond). However, many attempts to simulate the magnetic susceptibility for 2 and 3 with the help of our fitting program failed. Because six-coordinate Fe(II)/Co(II) ions usually present considerable first-order orbital momentum,24 the Hamiltonian operator must be supplemented by the orbitally dependent exchange interactions and spin–orbit coupling effects.
For the exploration of the magnetic exchange mechanism, DFT calculation of 1 based on the GGA + U algorithm was conducted with the help of the VASP27 program. An effective Hubbard Ueff of 6.01 eV for Mn(II) was determined by the linear response method of the PWSCF program28 (see ESI†). Based on optimised geometry with or without the Ueff, the total DOS (TDOS) and PDOS of linking carboxylate (such as O2, C4 O3 atoms) and Mn(II) ions under the Ueff of 0.0 eV and 6.01 eV were calculated, as shown in Fig. 6. In nature, the magnetic properties are controlled by the DOS near the Fermi level. A glance at the DOS shows that the distinct areas between spin-up and spin-down are distributed in the vicinity of the Fermi level. TDOS, 3d PDOS of Mn(II) and 2p PDOS of the linking carboxylate are split clearly, resulting in an ordered spin distribution by the exchange interaction. Combining DOS and spin magnetic moment (see Table 1), it is found that magnetic properties of 1 originated from Mn(II) ions and the linking carboxylate. Obviously, anti-ferromagnetic coupling of 1 is derived from 3d electrons of the Mn(II) ion propagating by four −/−/+ spin nets of O2–C4–O3. In addition, stronger correlation of Mn(II) ions can effectively affect the electronic structure and magnetic properties of 1. There are three aspects as follows: (1) for Mn(II) and bridging atoms, the spin up (black) PDOS peaks at the Fermi level play a dominant role under the Ueff of 0.0 eV, while the spin-down (red) PDOS peaks under the Ueff of 6.01 eV are higher than spin-up PDOS peaks. (2) With the value of Ueff increasing, the absolute spin magnetic moments of Mn(II) ions enhance (4.72 and −4.720μB for 6.01 eV, 1.063 and −1.067μB for 0.00 eV), where the absolute spin magnetic moments of Mn(II) (4.72μB) are very approximate to the experimental value (4.94μB) at room temperature. (3) The obtained band gap at the Ueff of 6.01 eV is larger than for the Ueff of 0.00 eV. Generally, magnetic properties of 1 can be attributed to the coupling of paramagnetic Mn(II) ions by −/−/+ spin nets of O2–C4–O3.
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Fig. 6 PDOS of 1 under the Ueff of 0.0 eV (a) and 6.01 eV (b) in spin-up (black) and spin-down (red) with the Fermi level (blue line). |
U eff/eV | 0.00 | 6.01 |
---|---|---|
Mn1 | 1.063 | 4.720 |
Mn2 | −1.067 | −4.720 |
O2 | −0.019 | −0.008 |
C4 | −0.004 | −0.003 |
O3 | 0.009 | 0.008 |
Likewise, magnetic properties of 4 were also measured. The obtained plot of χMT vs. T is presented in Fig. 7. The χMT value at room temperature is 0.40 cm3 mol−1 K, which is in line with the value of 0.375 cm3 mol−1 K of a single Cu(II) ion following Curie's law. Before 50 K, the χMT value almost remains invariable. Afterward, as the temperature decreases, the χMT value rapidly increases and reaches a maximum of 0.87 cm3 mol−1 K at 2 K. Therefore, it is found that 4 exhibits ferromagnetic properties. Furthermore, following the Curie–Weiss law,23 the fitting for χm−1vs. T over the temperature range of 100–300 K generates the parameters with C = 0.39 cm3 mol−1 K and θ = 3.82 K, as shown in Fig. S7.† The positive Curie temperature validates the ferromagnetic properties of 4. Similarly, QMC fitting was performed (see ESI†). In the fitting process, the parameter J was represented as the coupling interaction between two Cu(II) ions (see Fig. 7(b) and (c)), and the zJ parameter was invoked to describe the weak interaction between metal-bound chains, e.g. van der Waals force. The resulting best parameters are J = 2.23 cm−1, zJ = −0.41 cm−1, g = 2.06 and R = 3.23 × 10−4. The 2.23 cm−1 value of the coupling parameter reveals that 4 has weak ferromagnetic properties. Negative zJ (−0.41 cm−1) suggests the existence of a weak antiferromagnetic interaction between {Cu(COO)}n chains.
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Fig. 7 Experiment plot (black ○) and QMC fitting line (solid line) of χmT vs. T in 4 (a); the sketch of Cu2+ distribution (b) and Hamilton operator (c) of 4. |
The magnetic propagating mechanism was further identified by DFT calculations. By using the linear response method, the Ueff of Cu(II) in 4 is found to be 1.68 eV (see ESI†). It is evident from Fig. 8 and Table 2 that the effective Hubbard Ueff cannot effectively affect the characteristics of DOS and the absolute value of spin magnetic moments, except the change of the spin direction. To examine the PDOS in the vicinity of Fermi level is very helpful to understand magnetic coupling mechanism of 4. According to PDOS distribution in the Ueff of 1.68 eV, it is observed that the main origin of magnetic properties in 4 is provided by Cu(II) ions. However, linking carboxylate atoms also contribute spin magnetic moments, see Table 2. Furthermore, we can see that PDOS of d electrons of Cu(II) ions and p electrons of linking carboxylate (e.g. O2, C4 and O3) have similar peaks, which suggests that these orbitals take part in hybridization. The phenomena play a pivotal role in the indirect propagation between Cu(II) ions of two units, implying that linking carboxylate atoms serve as superexchange pathways. Therefore, ferromagnetic exchanges of two Cu(II) ions come from the spin polarization effect through the carboxylate bridge in the +/+/+ spin nets of O2–C4–O3.
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Fig. 8 PDOS of 4 under the Ueff of 0.0 eV (a) and 1.68 eV (b) in spin-up (black) and spin-down (red) with the Fermi level (blue line). |
U eff/eV | 0.00 | 1.68 |
---|---|---|
Cu1 | −0.596 | 0.601 |
Cu2 | −0.596 | 0.601 |
O2 | −0.002 | 0.002 |
C4 | −0.009 | 0.009 |
O3 | −0.072 | 0.071 |
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Fig. 9 UV (a), fluorescence spectra (b), band structure (c) and PDOS (d) of 5 with the Ueff of 6.52 eV (Fermi level is set to 0.0 eV). |
For solid state materials, it is difficult to faultlessly explain the detailed mechanism of emission by the DFT method. However, via the electronic structure, we can still find that under the exposure to excited light, a majority of electrons readily transfer to the region of the second empty band, and successively rebound to CB without any emission, and lastly return to CB with the specific emission of 390 nm. In nature, the observed emission peak can be attributed to the electron transfer from the Ag–Ag metal bond (features 5s type orbitals) to localized 4d orbitals of Ag atoms.
Footnote |
† Electronic supplementary information (ESI) available: Synthesis and structural information of 1–6; DFT and QMC computation details; TG, XRD and IR plots; the UV-vis theoretical curve. See DOI: 10.1039/c4qi00043a |
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