Lara R.
Malins
,
Katie M.
Cergol
and
Richard J.
Payne
*
School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia. E-mail: richard.payne@sydney.edu.au; Fax: +61 2 9351 3329; Tel: +61 2 9351 5877
First published on 10th October 2013
Peptide ligation–desulfurization chemistry at 2-thiol tryptophan (Trp) is described for the first time. Installation of a thiol auxiliary was achieved through late-stage chemoselective sulfenylation chemistry at the 2-position of the indole ring of Trp either in solution or on solid support, thus abrogating the need for the preparation of a pre-formed thiolated amino acid. Peptides possessing the 2-thiol Trp functionality on the N-terminus were shown to facilitate high yielding ligation reactions with a variety of C-terminal peptide thiophenyl thioesters. Efficient removal of the 2-thiol Trp auxiliary following the ligation reactions was achieved via reductive desulfurization and provided native peptide products in excellent yields. The utility of the methodology was demonstrated in the synthesis of a glycosylated fragment of the N-terminal extracellular domain of the chemokine receptor CXCR1.
The development of these ligation approaches has greatly expanded the scope of ligation beyond Cys-containing peptides. However, the main obstacle in utilising ligation methods at amino acids other than Cys is the synthetic challenge of accessing a suitably protected thiol- or selenol-functionalised amino acid building block for direct incorporation into peptides via solid-phase peptide synthesis (SPPS) (Scheme 1A). Indeed, with the exception of Val ligations (achieved using suitably protected, commercially available penicillamine)15 and thiol and selenol Pro-mediated ligations (using commercially available 4-thioproline19 or 4-hydroxyproline precursors,20 respectively) current approaches often require numerous synthetic steps (7–16)5 thus limiting the widespread use of these building blocks in peptide ligation chemistry. We envisioned that an ideal approach to thiol- or selenol-derived amino acids would involve late-stage installation of the ligation auxiliary, following the construction of the peptide (Scheme 1B), thereby eliminating the need for the synthesis of a preformed building block. Given the vast array of functionality represented in the side chains of proteinogenic amino acid residues, chemoselectivity is a major barrier to selective installation of a reactive thiol or selenol auxiliary into a fully synthesised, unprotected peptide.
We were encouraged by early reports from Scoffone et al. that demonstrated the site-selective modification of the nucleophilic 2-position of the Trp indole ring through electrophilic sulfenylation with various sulfenyl chlorides.26,27 Importantly, these studies showed that in acidic media other nucleophilic amino acid side-chains remained unmodified, as in the case of the ε-amino moiety of Lys and the alcohol functionalities of serine (Ser) and Thr, or reversibly modified in the case of Cys, which forms an asymmetric disulfide that can be easily reduced. Additionally, facile thiolytic cleavage of the resulting 2-Trp thioether peptide derivatives using an external thiol nucleophile can yield the corresponding 2-thiol Trp derivatives.28 To date, this chemistry has been used in a few isolated examples, specifically to install a 2-sulfhydryl group at the sole Trp residue in the peptide hormones glucagon,29,30 corticotropin,31 and luliberin.32 However, the true scope of this chemistry remains largely unexplored. Given the ease with which a potentially reactive thiol auxiliary can be installed chemoselectively onto Trp residues in fully deprotected peptides and proteins, we were interested in investigating whether 2-thiol Trp containing peptides would be capable of facilitating peptide ligation chemistry with C-terminal peptide thioesters. Current methods for ligation at N-terminal Trp residues include a Pictet–Spengler approach by Tam and co-workers, which results in the formation of an unnatural tetrahydro-β-carboline linkage,33 and the ligation of Trp isopeptide units by N- to N-acyl transfer,34 which is reliant on basic, non-aqueous reaction media and a multi-step synthesis of pre-formed isopeptide ligation precursors which can undergo the requisite rearrangement. Such factors limit the general applicability of these approaches in the synthesis of native peptide and protein targets. We envisioned that ligation chemistry facilitated by 2-thiol Trp-containing peptides would greatly enhance the scope and utility of ligation technologies, especially if peptide precursors could be accessed in a simple and rapid manner. In an approach mechanistically similar to native chemical ligation, we proposed that a reaction with a peptide thioester would proceed via an initial transthioesterification step with the indole 2-thiol functionality followed by an S- to N-acyl shift through a 7-membered ring transition state to generate a native amide bond (Scheme 2). Based on prior reports of auxiliary-mediated ligations,35–39 we envisaged that the S- to N-acyl rearrangement would still occur through the larger ring sized transition state when compared with native chemical ligation (5-membered ring transition state).
Scheme 3 Synthesis of 2-thiol Trp peptide 4via sulfenylation (in solution or on-resin) and subsequent thiolysis. (S = Ser, P = Pro, G = Gly, Y = Tyr.) |
To improve the efficiency of the reaction and minimise intermediate purification steps, we also sought to effect sulfenylation of Trp directly on resin. Gratifyingly, we were able to achieve solid-phase sulfenylation through treatment of resin-bound peptide 1 with 20 eq. DNPS-Cl and 20 eq. AcOH in DMF at ambient temperature for 2 h to generate, after acidic cleavage from the resin, peptide 3 in 38% yield based on the original resin loading. Interestingly, the success of the reaction required the presence of an unprotected indole nitrogen. Side-chain Boc-protected Trp residues (often incorporated as standard protection of the side chain indole) were unreactive to the sulfenylation conditions. This suggests that site-selective solid-phase sulfenylation of peptides bearing multiple Trp residues may be possible. Following solution or solid-phase sulfenylation, DNPS removal from peptide 3 was facilitated through thiolysis to unmask the reactive indole thiol functionality. Although previous studies have utilised β-mercaptoethanol to effect thiolysis,28 in our hands, treatment with excess thiophenol in the presence of a buffer comprised of 6 M guanidine hydrochloride (Gn·HCl)/0.1 M Na2HPO4 at pH = 8.0 optimally afforded 2-thiol Trp containing peptide 4 in 84% yield following HPLC purification. It should be noted that this peptide rapidly oxidized to the corresponding disulfide dimer, which was solely isolated following lyophilisation. In addition to NMR spectroscopy and HPLC analysis, our model peptides 2–4 were also characterised by UV absorption spectroscopy to provide a simple and convenient means of following reactions at the 2-position of Trp within these molecules (Fig. S1 and Table S2, see ESI† for details). Importantly, each peptide possessed a characteristic absorption pattern, which may therefore be used to follow transformations in large peptide and protein systems via UV spectroscopic experiments.
Having demonstrated that ligation at Trp could be effected at a C-terminal Gly thioester 5, we next conducted a reaction with a model Ala thiophenyl thioester (Ac-LYRANA-SPh 6) to assess the effects of increased steric demand at the ligation junction. Gratifyingly, this reaction also proceeded without formation of the thiophenyl ether by-product under the same conditions used for the ligation at the Gly thioester. However, in this case we noted the appearance of a small amount (ca. 10%) of epimerized thiophenyl thioester during the course of the reaction. Interestingly, despite the observed epimerization of the starting material, the stereochemical integrity of the ligation product was retained (as judged by HPLC-MS analysis). Given this surprising result, we decided to probe the potential role of the 2-thiol Trp moiety within peptide 4 on the observed epimerization. To this end, we first incubated the Ala thiophenyl thioester 6 under ligation conditions in the absence of 4 (see ESI†, Fig. S40). To our surprise, at pH 7, the model Ala thiophenyl thioester underwent significant epimerization (ca. 15% at t = 1 h) along with substantial hydrolysis over time. Epimerization was also observed upon incubation of 6 with ligation buffer in the absence of TCEP (Fig. S42†). In order to avoid epimerization of the acyl donor peptide we subsequently screened a variety of pre-formed activated thioesters with varying reactivities (as estimated by the pKa value and corresponding leaving group propensity of the thiol component).43 These included peptide thioesters bearing C-terminal 4-mercaptophenylacetic acid (MPAA), 4-(amino)thiophenol, 2-(hydroxy)thiophenol and 2-mercaptoethanesulfonate sodium salt (MESNa) moieties. The more reactive aryl thioesters (lower pKa values) all led to enhanced hydrolysis and/or epimerization upon incubation, while the MESNa-derived alkyl thioester did not epimerize but was highly unreactive in 2-thiol Trp-mediated peptide ligations. To the best of our knowledge, epimerization of pre-formed aryl thioesters in ligation reactions at N-terminal Cys or thiol-derived amino acids has not been previously observed. It is highly probable that ligations at Cys residues (and most thiolated amino acids) with the majority of activated C-terminal peptide thioesters proceed extremely rapidly and without thioester epimerization. However, slower ligation systems, particularly those involving more sterically demanding or weakly nucleophilic N-terminal Cys surrogates and/or bulky C-terminal thioesters requiring lengthy reaction times41 may be prone to epimerization by-products. It is therefore recommended that such tendencies are carefully considered in the design of new ligation methodologies and in experiments employing pre-formed activated thioesters.
In light of these considerations and having demonstrated previously that ligation chemistry at 2-thiol Trp was possible using pre-formed Gly and Ala thiophenyl thioesters 5 and 6, respectively, we proceeded to further optimise this system to ensure the stereochemical integrity of the products and to improve the yield of the reaction. Specifically, to reduce the likelihood of epimerization in the ligated product, we first performed ligation reactions at reduced pH (6.5–6.7). In addition, an excess of peptide thioester (1.5–2.0 eq. total) was added over two separate portions (see Table 1) to reduce thioester hydrolysis and to simultaneously minimise the amount of time the thiophenyl thioester was incubated with the ligation buffer. The ligation reactions were also performed at a 4 mM concentration with respect to peptide 4, which further increased the rate of ligation whilst suppressing the thiophenol ether by-product previously observed. Under our optimised conditions, we were able to successfully ligate 4 with model Gly and Ala thiophenyl thioesters 5 and 6, with the desired ligation products isolated in excellent yields by reverse-phase HPLC purification following a 24 h reaction time (71% and 81%, respectively, see Table 1, entries 1 and 2). Importantly, the reaction with C-terminal Ala thioester 6 did not lead to any detectable epimerization in the ligation product (see Fig. 1A). Interestingly, in both cases, the 2-thiol Trp ligation products quickly oxidized in the presence of air to generate the corresponding disulfides. The high oxidation potential is evident in Fig. 1A, where peak (a) represents the free thiol ligation product and peak (b) the formation of the corresponding disulfide, despite the presence of an excess of the phosphine reducing agent (TCEP) in the ligation buffer.
Entry | Thioester (X =) | Ligationa | Desulfurizationa |
---|---|---|---|
a Isolated yields. b Additional thioester added at t = 8 h. c Additional thioester added at t = 15 h. d t = 30 h reaction time; ligation conditions: buffer (6 M Gn·HCl/0.1 M Na2HPO4/100 mM TCEP, 4 mM concentration with respect to 4), final pH = 6.5–6.7, 37 °C, 24 h; desulfurization conditions: Pd/Al2O3, buffer (6 M Gn·HCl/0.1 M Na2HPO4, adjusted to pH 5.8), H2 gas, 0 °C, 4 h. (L = Leu, R = Arg, N = Asn.) | |||
1 | 5: Glyb | 71% | 71% |
2 | 6: Alac | 81% | 89% |
3 | 7: Met | 80% | 61% |
4 | 8: Phe | 65% | 72% |
5 | 9: Prod | 58% | 82% |
We were next interested in gauging the scope of the reaction at peptide thioesters bearing a range of C-terminal residues with varying degrees of steric bulk. For this purpose, thiophenyl thioesters (Ac-LYRANX-SPh) bearing C-terminal Met 7, Phe 8 and Pro 9 residues (in addition to thioesters 5 and 6 described above) were synthesised (see ESI†). Under the optimised conditions developed previously (6 M Gn·HCl/0.1 M Na2HPO4/100 mM TCEP, 4 mM concentration with respect to 4, pH = 6.5–6.7, 37 °C), we were able to successfully ligate peptide 4 to the model Met and Phe thiophenyl thioesters in good yields (80% and 65%, respectively) following HPLC purification and without detectable epimerization of the ligation products. Reactions were allowed to proceed for 24 h although the ligations had progressed considerably within the first 4 h of reaction time (see Fig. S16 and S18, ESI†). Notably, the ligation reaction with model C-terminal Pro thioester 9 was run for 30 h to provide the desired ligation product in 58% yield after HPLC purification (Table 1, entry 5). The notoriously sluggish reactivity of Pro thioesters has been attributed to a decrease in electrophilicity of the thioester carbonyl carbon caused by an orbital interaction with the Pro amide oxygen.44 By pre-forming a highly activated thiophenyl thioester, we were able to increase the reactivity of the thioester carbonyl carbon to effectively facilitate the ligation reaction.
Following the success of the ligation–desulfurization protocol employing model 2-thiol Trp peptide 4, we were next interested in further gauging the compatibility of the methodology in the presence of additional Met and Cys residues within a given peptide sequence. To this end, we synthesised peptide 10, bearing a C-terminal Met residue and an N-terminal 2-thiol Trp residue. Assembly of the peptide by standard Fmoc-SPPS, followed by solid-phase sulfenylation and cleavage from the resin provided peptide 11 in 34% yield based on the original resin loading (Scheme 4). Thiolysis of peptide 11 subsequently afforded peptide 10 bearing a 2-thiol Trp moiety in 71% yield. This model peptide was next ligated with thiophenyl thioester 8, containing a C-terminal Phe residue, under the optimised ligation conditions to provide 12 in 78% yield following HPLC purification. Removal of the thiol ligation auxiliary via reductive desulfurization then afforded the native peptide product 13 in 99% isolated yield with no evidence of Met desulfurization. Peptide 10 was similarly ligated with an additional model peptide thioester, Ac-LYRC(Acm)NG-SPh 14, containing an internal Cys(Acm)47 residue, providing 15 in 61% yield. Protection of the Cys residue was necessary to prevent the conversion of Cys to Ala upon reductive desulfurization, as has been reported for native chemical ligation–desulfurization.8 Treatment of 15 with H2 and Pd on Al2O3 successfully effected removal of the 2-thiol Trp auxiliary, without reduction of the Cys or Met residue, to afford 16 in 66% yield following isolation by reverse-phase HPLC.
Scheme 4 Synthesis of 2-thiol Trp peptide 10via solid-phase sulfenylation and subsequent ligation with thioesters 8 and 14. (M = Met, C = Cys.) |
Having demonstrated the feasibility of the ligation–desulfurization protocol on a variety of model peptides, we were next interested in applying the methodology to the synthesis of a more complex target. Specifically, we chose to assemble a glycopeptide fragment of the N-terminal extracellular domain of the chemokine receptor CXCR1, which bears a single Trp residue. We envisaged that the target peptide, CXCR1 (1–28) 17, containing an N-linked GlcNAc moiety β-linked to an Asn residue and three internal Met residues, could be accessed via ligation–desulfurization chemistry between glycopeptide 18 bearing an N-terminal 2-thiol Trp moiety, corresponding to CXCR1 (10–28), and peptide thioester 19 corresponding to residues 1–9 of CXCR1 (Scheme 5). CXCR1 (10–28) 20 was first assembled on resin via standard Fmoc-SPPS, which included coupling of glycosylamino acid cassette 21. This was followed by on-resin deacetylation of the acetate protecting groups on the carbohydrate and solid-phase sulfenylation to afford 20 in 9% yield after cleavage and purification (see ESI† for details). Thiolysis of peptide 20 then afforded the 2-thiol Trp glycopeptide 18 in 60% yield. Subsequent ligation with the CXCR1 (1–9) thiophenyl thioester 19 proceeded to completion within 5 h under the ligation conditions described earlier (see ESI†) and following HPLC purification, the desired product 22 was isolated in excellent yield (91%). Initial desulfurization of 22 under standard reductive desulfurization conditions (0 °C, 3 h) resulted in the partial desulfurization (∼15–20%) of a single, highly labile Met residue, a by-product that was not previously observed in the model peptide examples. The reaction was subsequently performed for a shorter period of time (5 min), which effected quantitative conversion to CXCR1 (1–28) 17 as judged by HPLC-MS analysis with no evidence of the concomitant reduction of Met. Unfortunately, isolation of 17via preparative HPLC following reductive desulfurization was complicated by adsorption of the peptide to the Pd catalyst. However, treatment with excess thiourea prior to purification facilitated isolation of the target glycopeptide 17 in excellent yield (79%). Importantly, the application of the 2-thiol Trp ligation–desulfurization protocol in the high-yielding synthesis of CXCR1 (1–28) highlights the utility of this methodology for the construction of complex peptide targets.
Scheme 5 Synthesis of CXCR1 (1–28) via ligation at 2-thiol Trp. (D = Asp, T = Thr, E = Glu, I = Ile, Q = Gln.) |
Footnote |
† Electronic supplementary information (ESI) available: Full details of synthetic experiments and characterisation of peptides and ligation products. See DOI: 10.1039/c3sc51497h |
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