Ayesha
Jacobs
* and
Francoise M.
Amombo Noa
Department of Chemistry, Faculty of Applied Sciences, Cape Peninsula University of Technology, PO Box 652, Cape Town 8000, South Africa. E-mail: jacobsa@cput.ac.za; Fax: +27 21 460 3854; Tel: +27 21 460 3167
First published on 18th November 2014
A series of co-crystals of vanillic acid (VA) with caffeine (CAF), theophylline (THP), theobromine (THB), nicotinamide (NAM), isonicotinamide (INM), acridine (ACR) and urea (U) have successfully been prepared. The co-crystals involving the methylated xanthines indicate different host: guest ratios with co-crystals VA·2CAF, 2VA·THP and the co-crystal hydrate VA·THB·2H2O. The nicotinamide and acridine co-crystals (VA·NAM and VA·ACR) displayed 1:1 molar ratios in contrast to the isonicotinamide co-crystal hydrate 2VA·2INM·2H2O. Co-crystallisation of vanillic acid with urea gave 2VA·2U. The co-crystals and co-crystal hydrates were characterised by single crystal X-ray diffraction and thermal analysis. Grinding and slurry experiments were also performed.
Compound | 1 | 2 | 3 | 4 |
---|---|---|---|---|
Structural formula | C8H8O4·2C8H10N4O2 | 2C8H8O4·C7H8N4O2 | C8H8O4·C7H8N4O2·2H2O | C8H8O4·C13H9N |
Molecular mass (g mol−1) | 556.54 | 515.45 | 384.35 | 347.36 |
Data collection temp. (K) | 173(2) | 173(2) | 173(2) | 173(2) |
Crystal system | Triclinic | Monoclinic | Triclinic | Monoclinic |
Space group | P | P21/c | P | P21/n |
a (Å) | 10.110(2) | 11.2741(6) | 8.2148(16) | 8.4690(17) |
b (Å) | 10.525(2) | 15.7712(10) | 8.2504(17) | 22.621(5) |
c (Å) | 12.221(2) | 13.3746(8) | 13.132(3) | 8.9534(18) |
α (°) | 77.69(3) | 90 | 102.82(3) | 90 |
β (°) | 81.26(3) | 90.572(2) | 97.46(3) | 90.68(3) |
γ (°) | 82.69(3) | 90 | 93.98(3) | 90 |
Volume (Å3) | 1249.7(4) | 2378.0(2) | 856.1(3) | 1715.1(6) |
Z | 2 | 4 | 2 | 4 |
D c, calc density (g cm−3) | 1.479 | 1.440 | 1.491 | 1.345 |
Absorption coefficient (mm−1) | 0.114 | 0.115 | 0.122 | 0.094 |
F(000) | 584 | 1076 | 404 | 728 |
θ range | 1.72–28.34 | 1.81–28.33 | 1.61–27.13 | 1.80–27.53 |
Limiting indices | −13,9; ±14; −16,15 | ±14; ±21; ±17 | ±10; ±10; ±16 | −11,10; −25, 29; −11,5 |
Reflections collected/unique | 12163/6186 | 29262/5876 | 7070/3767 | 8132/3933 |
Goodness-of-fit on F2 | 1.038 | 1.047 | 1.027 | 0.965 |
Final R indices [I > 2sigma(I)] | R 1 = 0.0542; wR2= 0.1448 | R 1 = 0.0470; wR2 = 0.1195 | R 1 = 0.0415; wR2 = 0.1045 | R 1 = 0.0511; wR2 = 0.1057 |
R indices (all data) | R 1 = 0.0782; wR2 = 0.1605 | R 1 = 0.0653; wR2 = 0.1299 | R 1 = 0.0609; wR2 = 0.1156 | R 1 = 0.1092; wR2 = 0.1276 |
Largest diff. peak and hole (e Å−3) | 0.885; −0.264 | 0.316; −0.242 | 0.260; −0.236 | 0.235; −0.234 |
Fig. 1 (a) Hydrogen bonding in 1. (b) Packing diagram of 1 along [100]. Hydrogen bonding is indicated with dashed lines. Hydrogens not involved in hydrogen bonding have been omitted. |
For the theophylline co-crystal, 2VA·THP (2), the structure solved in P21/c with two VA molecules and one THP molecule in the asymmetric unit. One of the VA molecules has a disordered methoxy group which refined with site occupancy factors of 0.812 and 0.188 respectively. The hydrogen bond network is more extensive due to the additional N–H donor group of the THP (Fig. 2). A VA molecule and a THP molecule form a hydrogen bonded ring which can be described as R22(9) using graphset notation,31 in addition to the R33(9) ring linking two VA and one THP molecule. This ring also utilises a weak C–H⋯O interaction (d(CO) = 3.031 Å). The hydrogen bonded layers in 2VA·THP stack in sheets parallel to [30] as shown in Fig. 3. The distance between the layers is approximately 3.750 Å with π⋯π stacking between VA and THP molecules.
Fig. 2 Hydrogen bonding in 2. Only the major component of the disordered VA has been shown for clarity. |
It is interesting to note the differences in crystal packing in the absence of the methoxy group of VA i.e. comparison of structures involving 4-hydroxybenzoic acid. Co-crystallisation of THP and 4-hydroxybenzoic acid yielded a 1:1 co-crystal.32 The R22(9) ring network persists, however the para-hydroxyl group forms a hydrogen bond with another imidazole nitrogen and not with a carbonyl group as was observed in 2VA·THP. Three co-crystals of CAF and 4-hydroxybenzoic acid have also been reported in the CSD;33 caffeine 4-hydroxybenzoic acid monohydrate,34 caffeine bis(4-hydroxybenzoic acid)35 and bis(caffeine) 4-hydroxybenzoic acid.35,36 The latter structure has units composed of one molecule of 4-hydroxybenzoic acid hydrogen bonded to two caffeine molecules. The Nimidazole⋯(COOH) hydrogen bond is maintained but the hydroxyl group forms a hydrogen bond with the urea carbonyl moiety and not the amide carbonyl as was observed in VA·2CAF. Zhang et al.35 described the structures of eight co-crystals of caffeine with hydroxybenzoic acids. The Nimidazole⋯(COOH) hydrogen bond was found in all eight co-crystals and follows the best acceptor/best donor model37,38 with the carboxylic acid as the best donor and the imidazole nitrogen as the best acceptor.34 However the hydrogen bonds involving the two CO groups of caffeine were less predictable. Of the eight co-crystals, three structures contained both OH(hydroxy)⋯O(amide) and OH(hydroxy)⋯O(urea) hydrogen bonds, while two contained only OH(hydroxy)⋯O(amide), another two only OH(hydroxy)⋯O(urea) and one contained neither interaction.
Unlike the previous two structures, theobromine formed a co-crystal hydrate with VA. Structure 3 (VA·THB·2H2O) solved successfully in the triclinic space group P with one THB, one VA and two water molecules in the asymmetric unit (Z = 2). The presence of water molecules disrupts the expected Nimidazole⋯(COOH) interaction and instead the VA and THB molecules form acid–imide heterosynthons which can be described as R22(8) rings. The VA-THB dimers pack in columns along [100] with the water molecules sandwiched between the columns (Fig. 4). The water molecules act as bridges linking the VA-THB dimers, with a water molecule acting as hydrogen bond donor to the imidazole nitrogen. A search of the CSD (May 2014 update) of THB co-crystals with carboxylic acids revealed five co-crystals39–42 and one co-crystal hydrate.43 All five co-crystals exhibited the Nimidazole⋯(COOH) heterosynthon. The co-crystal hydrate43 (gallic acid theobromine dihydrate) displayed the acid–imide heterosynthon with a water molecule donating a hydrogen bond to the imidazole nitrogen, which is consistent with our observation. For structure 3, water molecules occupy cavities and form tetramers which can be described as R44(8) rings. The VA and THB molecules stack in layers which utilise the aromatic rings of both molecules in the form of π⋯π interactions, the distance between the layers is 3.740 Å, with water molecules bridging the layers (Fig. 5).
The acridine co-crystal, 4, solved in the monoclinic space group P21/n, with one ACR and one VA molecule in the asymmetric unit (Z = 4). The infinite hydrogen bonded chains (Fig. 6a) form a zig-zag motif with each VA molecule hydrogen bonded to one ACR molecule via (VA)COOH⋯N(ACR) hydrogen bonds and the hydroxyl group of VA linked to the carbonyl of another VA molecule.
Adjacent ACR molecules interact via π⋯π stacking with a minimum distance of 3.733 Å. The packing diagram along [001] is shown in Fig. 6b.
Table 2 summarises the crystal data for the NAM, INM and urea co-crystals. The NAM co-crystal, 5 and the INM co-crystal hydrate, 6, were both solved in P. For 5, the two VA molecules form a R22(8) dimer with the hydroxyl groups of VA linked to NAM molecules via one N–H bond, Fig. 7. The other N–H bond is linked to a neighbouring NAM molecule via the carbonyl group to form chains along [100]. In addition, two VA molecules and two NAM molecules are connected to form R44(16) hydrogen bonded rings. Very weak π⋯π interactions (4.470 Å) present between VA and NAM molecules. Comparison with the 1:1 4-hydroxybenzoic acid NAM co-crystal44,45 shows the acid–amide heterosynthon forming R22(8) rings with neighbouring acid–amide pairs connected to form R24(8) rings, in contrast to the acid homosynthon found in 5. The acid–amide heterosynthon is also found in the 1:1 4-hydroxybenzoic acid INM co-crystal.46 The asymmetric unit for structure 6 contains two VA, two INM and two water molecules.
Compound | 5 | 6 | 7 |
---|---|---|---|
Structural formula | C8H8O4·C6H6N2O | 2C8H8O4·2C6H6N2O·2H2O | 2C8H8O4·2CH4N2O |
Molecular mass (g mol−1) | 290.27 | 616.58 | 456.41 |
Data collection temp. (K) | 173(2) | 173(2) | 173(2) |
Crystal system | Triclinic | Triclinic | Triclinic |
Space group | P | P | P |
a (Å) | 4.8723(10) | 7.9000(16) | 6.9821(14) |
b (Å) | 8.0058(16) | 13.196(3) | 10.232(2) |
c (Å) | 18.018(4) | 13.735(3) | 15.388(3) |
α (°) | 78.85(3) | 85.02(3) | 99.68(3) |
β (°) | 84.50(3) | 85.32(3) | 95.37(3) |
γ (°) | 75.62(3) | 78.68(3) | 103.46(3) |
Volume (Å3) | 667.1(2) | 1395.6(5) | 1043.8(4) |
Z | 2 | 2 | 2 |
D c, calc density (g cm−3) | 1.445 | 1.467 | 1.452 |
Absorption coefficient (mm−1) | 0.111 | 0.116 | 0.120 |
F(000) | 304 | 648 | 480 |
θ range | 2.31–28.33 | 2.94–27.71 | 1.36–26.74 |
Limiting indices | h: −6, 3; k: −10, 9; l: −23, 24 | h: ±10; k: ±17; l: ±17 | h: ±8; ±12; l: ±19 |
Reflections collected/unique | 5518/3283 | 12277/6451 | 11587/4411 |
Goodness-of-fit on F2 | 1.004 | 1.021 | 0.969 |
Final R indices [I > 2sigma(I)] | R 1 = 0.0442; wR2 = 0.1042 | R 1 = 0.0511; wR2 = 0.1183 | R 1 = 0.0474; wR2 = 0.1024 |
R indices (all data) | R 1 = 0.0678; wR2 = 0.1164 | R 1 = 0.0967; wR2 = 0.1414 | R 1 = 0.0845; wR2 = 0.1191 |
Largest diff. peak and hole (e Å−3) | 0.255; −0.313 | 0.215; −0.264 | 0.215; −0.265 |
Unlike structure 5 which demonstrates the carboxylic acid homosynthon, the INM co-crystal hydrate displays amide homosynthons, R22(8), connected via R24(8) rings. Two VA and two water molecules are linked to form R44(20) rings. In addition, the –COOH group of VA is involved in –OH⋯N and –CO⋯HN hydrogen bonds to two INM molecules. The water bridged layers are illlustrated in Fig. 8. The layers associate via π⋯π interactions with a minimum distance of 3.669 Å between the centroids of INM and VA molecules.
The urea co-crystal, 7, also solved in P with two VA and two urea molecules in the asymmetric unit. The structure exhibits the carboxylic acid homosynthon and the amide homosynthon, both rings can be described as R22(8).
The VA dimers stack in layers parallel to [100] displaying π⋯π stacking with the distance between the centroids of VA molecules approximately 3.606 Å. The urea molecules form ribbons along [100], illustrated in Fig. 9 with the carbonyl group of the urea hydrogen bonded to the hydroxyl of a VA molecule. Thus the urea oxygen acts as a trifurcated acceptor to two urea molecules and a VA molecule.
The packing for most of the co-crystals and co-crystal hydrates in this study is characterised by hydrogen bonded rings, the exceptions are 1, where there are units comprising one VA and two CAF molecules and chains of VA and ACR molecules as seen in 4. In the two cases where water is included in the structure (3 and 6), the water molecules utilise all of their donor and acceptor sites.
For 3, four water molecules form tetramers, R44(8) rings which in turn act as either a hydrogen bond donor (via (water)OH⋯O(THB)/(water)OH⋯Namide(THB)) or acceptor group (via (water)O⋯HO(VA)) to the acid–amide heterosynthon and for 6, two VA and two water molecules form R44(20) rings. Comparison of the utilisation of the hydrogen bond donor and acceptor groups of the VA molecule revealed that the INM cocrystal hydrate, 6, utilises all of the H-bonding sites for intermolecular interactions. For this structure both VA molecules in the asymmetric unit participate fully in hydrogen bonding, with the methoxy groups in particular acting as H-bond acceptors to water molecules. In the case of the urea co-crystal, 7, there are weak interactions between the N–H bonds of urea and the –OCH3 group with (d(N⋯O) = 3.168 Å, 3.194 Å, 3.376 Å and 3.225 Å). The –OCH3 group also acts as an intramolecular H-bond acceptor to the adjacent –OH of the VA. The geometries of this intramolecular bond, d(O⋯O)/Å, <OH⋯O/° are as follows: 1: 2.691 Å, 109.0°; 2: 2.695 Å, 108.7°; 2.765 Å, 107.3°; 3: 2.682 Å, 108.3°; 4: 2.677 Å, 107.9° and 5: 2.688 Å, 106.2°, 6: none and 7: 2.702 Å, 111.2°. This correlates well with previous studies where it was found that six membered rings had the largest propensity of being involved in intramolecular hydrogen bonding.47 Not surprisingly π⋯π stacking also features prominently due to the aromaticity of VA and the co-crystal formers. There is also variation in the strength of the π⋯π interactions found for the structures, with a distance of 3.546 Å between VA and CAF molecules (1) and 4.470 Å between VA and NAM molecules (5). The hydrogen bond data for all structures is summarised in Table 3.
Compound | Donor (D) | Acceptor (A) | D⋯A/Å | D–H/Å | H⋯A/Å | D–H⋯A/° |
---|---|---|---|---|---|---|
a x, y − 1, z. b 1 − x, 0.5 + y, −z − 0.5. c 1 − x, y − 0.5, −z − 0.5. d −x, −y − 1, −z + 1. e −x, −y, −z + 2. f −x + 1, −y + 1, −z + 1. g x, y + 1, z. h x − 0.5, 0.5 − y, 0.5 + z. i x − 1, y, z. j 1 + x, y, z. k 3 − x, 1 − y, −z. l −x, −y + 1, −z. m −x, −y, −z + 1. n −x + 1, −y + 1, −z + 2. o x + 1, y, z + 1. p −x + 1, −y + 2, −z. q x − 1, y, z. | ||||||
1 | O3 | O7 | 2.802(2) | 0.86(1) | 1.99(2) | 157(1) |
O2 | N14 | 2.684(2) | 0.88(2) | 1.83(2) | 163(I) | |
2 | O2 | O5 | 2.644(2) | 0.94(3) | 1.71(3) | 175(2) |
N16 | H16 | 2.770(2) | 0.93(1) | 1.85(1) | 172(1) | |
O2A | N14 | 2.679(2) | 0.93(3) | 1.78(3) | 162(2) | |
O3 | O6a | 2.679(2) | 0.92(1) | 1.92(1) | 140(1) | |
O3A | O1Ab | 2.616(2) | 0.92(3) | 1.71(3) | 170(3) | |
C15 | O3Ac | 3.031(2) | 0.95 | 2.18 | 148 | |
3 | O1 | O8 | 2.652(2) | 0.94(3) | 1.72(3) | 172(2) |
N17 | O2 | 2.825(2) | 0.92(2) | 1.91(2) | 172(2) | |
O3 | O5 | 2.719(2) | 0.88(3) | 1.86(3) | 165(2) | |
O5 | O7d | 2.802(2) | 0.86(3) | 1.94(3) | 179(3) | |
O5 | O6e | 2.763(2) | 0.84(3) | 1.93(3) | 172(2) | |
O6 | N13f | 2.901(2) | 0.90(1) | 2.01(3) | 169(2) | |
O6 | O5g | 2.868(2) | 0.85(3) | 2.06(3) | 157(3) | |
4 | O1 | N9 | 2.562(2) | 0.97(1) | 1.60(1) | 174(3) |
O3 | O2h | 2.647(2) | 0.92(3) | 1.78(3) | 157(3) | |
5 | O2 | O1f | 2.606(2) | 0.84 | 1.78 | 168 |
N6 | O3i | 2.973(2) | 0.92(1) | 2.06(1) | 170(1) | |
N6 | O5j | 2.847(2) | 0.88(1) | 2.00(1) | 162(1) | |
O3 | N10k | 2.675(2) | 0.91(1) | 1.86(1) | 148(1) | |
6 | O1 | N9 | 2.629(2) | 1.04(1) | 1.60(1) | 169(1) |
O3 | O6g | 2.657(2) | 1.00(1) | 1.67(1) | 168(1) | |
O5 | O4 | 3.051(2) | 0.89(1) | 2.19(1) | 163(1) | |
N16 | O17Aa | 2.899(2) | 1.00(1) | 1.91(1) | 173(1) | |
N16A | O17g | 2.931(2) | 0.98(1) | 1.97(1) | 169(1) | |
N16 | O17Al | 3.000(2) | 0.97(1) | 2.21(1) | 138(1) | |
N16A | O2 | 3.043(2) | 0.96(1) | 2.09(1) | 171(1) | |
O6 | O17m | 2.825(2) | 0.99(1) | 1.85(1) | 169(1) | |
O6 | O4A | 2.982(2) | 0.90(1) | 2.12(1) | 161(1) | |
O5 | O2An | 2.833(2) | 0.95(1) | 1.89(1) | 175(1) | |
O1A | N9Ao | 2.604(2) | 1.04(1) | 1.57(1) | 179(1) | |
O3A | O5a | 2.644(1) | 1.03(1) | 1.65(1) | 159(1) | |
7 | O1 | O2A | 2.615(2) | 0.99(1) | 1.63(1) | 177(1) |
O1A | O2 | 2.664(2) | 0.95(1) | 1.72(1) | 174(1) | |
O3 | O5p | 2.747(2) | 0.83(1) | 1.97(1) | 156(1) | |
O3A | O6q | 2.619(2) | 0.79(1) | 1.86(1) | 162(1) | |
N9 | O6 | 2.864(2) | 0.85(1) | 2.02(1) | 172(1) | |
N9 | O2Aa | 3.192(3) | 0.90(1) | 2.37(1) | 152(1) | |
N11 | O2Aa | 3.273(3) | 0.86(1) | 2.48(1) | 153(1) | |
N11 | O6i | 2.871(2) | 0.87(1) | 2.01(1) | 171(1) | |
N12 | O5j | 2.963(2) | 0.88(1) | 2.10(1) | 169(1) | |
N12 | O3Af | 3.036(2) | 0.88(1) | 2.24(1) | 150(1) | |
N14 | O5 | 2.976(2) | 0.90(1) | 2.08(1) | 172(1) | |
N14 | O3Af | 3.273(3) | 0.88(1) | 2.59(1) | 136(1) |
VA and co-crystal formers | Endotherm 1 (Tonset, K) | Endotherm 2 (Tonset, K) |
---|---|---|
VA | 482.3 | |
CAF | 419.6 (broad) | 508.4 |
THP | 547.7 | |
THB | 623.7 | |
ACR | 363.5 | 375.8 |
NAM | 401.6 | |
INM | 382.1 | 428.4 |
U | 410.0 |
Compound | Endotherm 1 (Tonset, K) | Endotherm 2 (Tonset, K) |
---|---|---|
1 | 437.7 | |
2 | 457.9 | |
3 | 360.3 | 465.2 |
4 | 438.7 | |
5 | 407.6 | |
6 | 348.9 | 410.2 |
7 | 435.6 |
We note that the melting points for compounds 4–7 fall in-between that of the starting components compared to the melting points for compounds 1–3 which are all lower than that of the starting components. TG analyses for the hydrates were correlated to the stoichiometric ratios found in the asymmetric unit. For 3, the experimental mass loss was 9.3% (calculated mass loss 10.3%) and for 6, the experimental mass loss was 5.0% (calculated mass loss 5.9%). For 3, one of the water molecules participates in three hydrogen bonds, as a hydrogen bond donor to the imidazole nitrogen and a water molecule. It also acts as a hydrogen bond acceptor to another water molecule. The second water molecule is involved in four hydrogen bonds; as a hydrogen bond donor to a carbonyl group of a THB molecule and a water molecule. It also acts as a hydrogen bond acceptor to the hydroxyl group of VA and another water molecule. The TG and DSC curves for 3 and 6 are shown in Fig. 10. We note that even though the water molecules in 3 occupy cavities and are involved in hydrogen bonding, the loss of water (Tonset = 360.3 K, Tpeak = 367.8 K) is observed below 373 K. A similar result was found for 6 where both water molecules participate in hydrogen bonding. For 6, one of the water molecules are linked to three VA molecules whereas the other water molecule connects two VA molecules and one INM molecule, however the loss of water is observed at Tonset = 348.9 K (Tpeak = 354.3 K). Zaworotko et al.43 described the structure and thermal stability of eleven co-crystal hydrates. The study highlighted the general unpredictability of correlating the structure to the thermal stability of hydrates with the observation that channel hydrates have a tendancy to demonstrate low thermal stability.
Fig. 10 (a) DSC plots for 3 (red), VA (green) and THB (blue). TG plot for 3. (b) DSC plots for 6 (red), VA (green) and INM (blue). TG plot for 6 (black). |
Compound | Slurry | Neat grinding | Liquid-assisted grinding |
---|---|---|---|
a X: the physical mixture/unidentified phase formed, √: same phase as co-crystallisation, −: experiment not performed. | |||
1 | √ | √ | — |
2 | Co-crystal hydrate | Co-crystal dihydrate | — |
3 | X | X | √ |
4 | √ | X | √ |
5 | X | X | √ |
6 | √ | X | √ |
7 | √ | X | √ |
Footnote |
† Electronic supplementary information (ESI) available: The thermal analysis results and PXRD results are available in the ESI. CCDC 1022106–1022112 contains the supplementary crystallographic data for this paper. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c4ce01795a |
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