N. A.
Hosny
a,
C.
Fitzgerald
b,
A.
Vyšniauskas
a,
A.
Athanasiadis
a,
T.
Berkemeier
c,
N.
Uygur
c,
U.
Pöschl
c,
M.
Shiraiwa
c,
M.
Kalberer
*b,
F. D.
Pope
*d and
M. K.
Kuimova
*a
aDepartment of Chemistry, Imperial College London, London, SW7 2AZ, UK. E-mail: m.kuimova@imperial.ac.UK
bDepartment of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK. E-mail: markus.kalberer@atm.ch.cam.ac.UK
cMultiphase Chemistry Department, Max Planck Institute for Chemistry, Hahn-Meitner Weg 1, 55128, Mainz, Germany
dSchool of Geography, Earth and Environmental Science, University of Birmingham, Edgbaston, B15 2TT, UK. E-mail: f.pope@bham.ac.UK
First published on 12th November 2015
Organic aerosol particles (OA) play major roles in atmospheric chemistry, climate, and public health. Aerosol particle viscosity is highly important since it can determine the ability of chemical species such as oxidants, organics or water to diffuse into the particle bulk. Recent measurements indicate that OA may be present in highly viscous states, however, diffusion rates of small molecules such as water are not limited by these high viscosities. Direct observational evidence of kinetic barriers caused by high viscosity and low diffusivity in aerosol particles were not available until recently; and techniques that are able to dynamically quantify and track viscosity changes during atmospherically relevant processes are still unavailable for atmospheric aerosols. Here we report quantitative, real-time, online observations of microscopic viscosity changes in aerosol particles of atmospherically relevant composition, using fluorescence lifetime imaging (FLIM) of viscosity. We show that microviscosity in ozonated oleic acid droplets and secondary organic aerosol (SOA) particles formed by ozonolysis of myrcene increases substantially with decreasing humidity and atmospheric oxidative aging processes. Furthermore, we found unexpected heterogeneities of microviscosity inside individual aerosol particles. The results of this study enhance our understanding of organic aerosol processes on microscopic scales and may have important implications for the modeling of atmospheric aerosol growth, composition and interactions with trace gases and clouds.
Several techniques have recently emerged that allow observations of aerosol phase, viscosity and condensed-phase diffusion.9,12,14,16,18–20 In particular, the observation of the particle bounce factor suggested that OA can be present in highly viscous semi-solid states, thereby challenging the traditional views of OA kinetics and thermodynamics.9 Likewise, bead tracking and poke flow experiments provided bulk viscosity measurements for α-pinene secondary organic aerosol (SOA) that are broadly consistent with these particles being present in semi-solid states with viscosities in the order of 108 Pa s at 40–50% relative humidity (RH). A more recent study reported diffusion coefficients of water in OA formed through ozonolysis of α-pinene SOA that are several orders of magnitude higher than might be expected from Stokes–Einstein conversion of bulk viscosity measurements,12 confirming that small molecules like water do not follow a Stokes–Einstein relation in a viscous matrix of large organic molecules.21 However, to our knowledge, direct observational evidence of the microscopic viscosity experienced by individual organic molecules (larger than water) in aerosol particles has not been reported prior to this work. Importantly, no analytical technique that we are aware of can directly quantify and map aerosol viscosity both spatially and temporally in real time. This limitation restricts our ability to observe rapid variations in particle viscosity under atmospherically relevant conditions. Here we quantitatively image dynamic changes in model OA micro-viscosity in real-time, using fluorescence lifetime detection from synthetic molecules, termed molecular rotors.22 These fluorescent dyes are sensitive to the micro-viscosity of their environment; with the fluorescence lifetime being directly linked to viscosity (see Methods). Note that microviscosity is the friction experienced by a single particle or molecule undergoing diffusion because of its interaction with its immediate environment. Thus, microviscosity may differ from bulk or macroviscosity that considers resistance of the bulk of the liquid to flow/shear stress. Thus, heterogeneity of the system is another possible cause for the deviation of microviscosity from bulk viscosity.
We recently described the development of FLIM with molecular rotors to μm-sized droplets of inorganic and organic standard compounds showing that the technique can be applied to atmospherically relevant system of low and intermediate viscosity.23 Here this methodology is used to investigate the evolution of particle viscosity in two dynamic and atmospherically relevant situations. Firstly, we studied the RH-dependent viscosity of SOA generated from the oxidation of myrcene. Myrcene is a common monoterpene emitted from the biosphere. SOA generated from terpenes represents globally the most abundant type of OAs found in the atmosphere.24 One subset of experiments was performed on α-pinene SOA to allow for direct comparison with previous studies.10,12 Secondly, the effect of atmospheric aging upon aerosol viscosity is exemplified through ozonolysis of oleic acid aerosol. Oleic acid is emitted into the atmosphere in small quantities, through fat burning,25 and is often used as a proxy for atmospheric alkenes found in the atmosphere.26–28
Particle collection via an impactor allows for direct sample analysis immediately after collection without any further sample preparation assuring that the viscosity is quantified without altering the chemical composition of the airborne particle via an extraction step. In fact, the ability to directly image impactor-collected particles is a unique advantage of our approach and was not possible previously. These results were compared to the viscosity data collected on water extracts of SOA particles collected on the Teflon filters, similar to the method employed for example in ref. 10.
The molecular rotor used was Cy3, a hydrophilic dye, which provides a measurable lifetime response to viscosity between 1 and 106 mPa s, Fig. S2.† The SOA fluorescence lifetimes, and hence viscosity, of both the water extracted and impacted particles increase strongly with decreasing RH (89% to 0% RH) as depicted by the colour change in Fig. 1a and b, and shift in lifetime histograms (Fig. S4†). After each change in RH, and prior to measurement, time was allowed for equilibration according to model estimates.21
Fig. 1 Measuring viscosity of oxidised myrcene aerosol during RH change. Fluorescence lifetime images of (a) water extracted fraction and (b) impactor collected samples at decreasing RH (scale bar 40 μm). Images show the increase of fluorescence lifetime with decreasing RH. (c) Averaged fluorescence lifetimes of individual aerosol particles that were either water extracted (blue) or impactor collected (red), measured at various RHs. (d) Lifetimes converted into viscosity according to the calibration in Fig. S2.† The lifetime values above the threshold in (c) (grey shaded area) are outside the calibrated range for the molecular rotor and were not converted in (d). |
Comparison of the average lifetime (Fig. 1c) and viscosity (Fig. 1d) values for the two collection methods identified an apparent difference in response, most notably at higher RH. We ascribe this to the removal of non-soluble products with lower hygroscopicity in the water extraction sample. Comparison of Fig. 1a and b also identifies that impactor-collected droplets of a similar size show higher intra-particle heterogeneity compared to the water extracted sample, while inter-particle spread is significantly higher in the water extracted sample. The reason for the greater inter particle spread for the water extracted sample is not clear at present, however, we note that preparation of the water extract involves significantly more steps than the impactor sample (collection, extraction, pre-concentration, spraying and viscosity measurement as opposed to just collection and measurement) so there is a greater possibility for analytical variation in the water extract. This data highlights the disparity between the sample preparation methods. Furthermore, Fig. 1c shows that for water extraction samples some lifetime data points measured at or below 40% RH are above our calibration limit of 2.8 ns and these points were not converted to viscosities in Fig. 1d. At the same time, for the impactor-collected data points all recorded values are entirely within our calibration range. We note that the data recorded in the 0–40% RH range likely require longer equilibration times,21 than were experimentally feasible. Therefore these data points represent lower limit estimates of viscosity at these conditions. However the particles measured under typical tropospheric RH conditions will be in thermodynamic equilibrium.
The above results clearly indicate that sample preparation without extraction is paramount for a realistic quantification of atmospheric particle viscosity and dynamics, highlighting a unique strength of our imaging approach. The equilibrium average viscosity from both preparation techniques reaches a lower limit viscosity value of 104 to 106 mPa s at 0% RH.
We note that our averaged values of viscosity for myrcene at each RH are about 10 times lower than the lowest limit of values reported for water-extracted α-pinene SOA in ref. 10 (Fig. 2). We have measured the lifetime from α-pinene water extracted SOA samples similar to that studied in ref. 10 and confirmed that the lifetime values for α-pinene-SOA are very close to those recorded for myrcene–SOA and thus the nature of the initial chemical substrate (e.g. myrcene or α-pinene) plays little role in the discrepancy with the literature.
Fig. 2 Measuring viscosity of oxidised SOA during RH change using various techniques. The data recorded in this study for myrcene () and α-pinene (), compared to the data in Renbaum-Wolff10 and Price12 (converted into inferred microviscosity values using the Stokes–Einstein relation) for the water-extracted α-pinene. The viscosities measured in this work of α-pinene-SOA are very close to those for myrcene SOA. While viscosities derived from water diffusion measurements12 agree well with the values measured in this work, bulk techniques such as10 determine significantly higher viscosities. |
We hypothesise that the difference can originate from different diffusion scales probed by these techniques. The molecular rotor viscosity imaging approach is sensitive to a very local microenvironment of the probe and will be determined by the domain in which it is localised. It has been previously shown that the diffusion coefficient values calculated from these microviscosities determined using a hydrophobic rotor BODIPY in lipid membranes compare well with those directly determined by fluorescence correlation spectroscopy (FCS), a method that probes diffusion on the microscopic scale.30 However, in a highly heterogeneous material it is feasible that molecular rotors do not efficiently incorporate in all domains present in the particle. In particular, it is likely that the Cy3 dye will preferentially incorporate into the more hydrophilic domains. Thus it is likely that the microviscosity values obtained using our method can be different from the bulk viscosity (as in ref. 10 and 13). We note that while the former determines the shape and the bounce efficiency of aerosols, it is likely the latter determines aerosol particle diffusivity and reactivity to chemicals, e.g. water transport dynamics within the particle.
This is supported in Fig. 2, which shows the diffusion coefficients of water molecules in water-extracted α-pinene SOA obtained by Price et al.12 converted into inferred viscosity values using the Stokes–Einstein relation (see ESI† for the details used for conversion) as compared to the bulk viscosity values reported in Renbaum-Wolff et al.10 and the microviscosity values determined for water-extracted myrcene and α-pinene OA in this work. Even though the Stokes–Einstein relation is not generally applicable for small molecules diffusing through a matrix of large molecules,19,21,31,32 the data derived from fluorescence of the hydrophilic molecular rotor overlap well with the viscosity estimated through water diffusivity; and both of the above datasets lie significantly lower than the macroviscosity of α-pinene determined by Renbaum-Wolff et al.10 Furthermore, diffusion coefficients determined for a hydrophobic molecule pyrene in oxidised α-pinene16 coincide well with the data of Renbaum-Wolff, confirming the heterogeneous nature of the oxidised SOA, with very specific hydrophobic and hydrophilic domains that possess vastly different viscosities. We note that our previous studies in viscous lipid membranes using a hydrophobic rotor BODIPY indicated a good correlation between translational diffusion as measured by FSC and rotational diffusion as measured by a molecular rotor.30 In combination, these results suggest that the rotational diffusion behaviour of an even larger molecule such as Cy3 in a viscous aerosol matrix is similar to translational diffusion of water. This correlation may be interesting to further explore for fluorophores of different sizes and such studies are currently underway in our laboratory.
The dynamics of the microviscosity change in non-equilibrated impactor-collected myrcene–SOA upon a fast and large jump in RH (0 to 98%) are shown in Fig. 3a. The viscosity reduces more rapidly at the particle surface and a diffusion front forms upon hydration of the high viscosity aerosol as illustrated by Fig. 3b (Movie S1†). This diffusion front is also clearly visible from the changes in width and shape of lifetime histograms (Fig. S5†). Continuous monitoring of the droplets identifies the long equilibration time required for uniformity to be reached (∼23 hours). Theoretical work has previously predicted diffusion fronts occurring in viscous systems.32Fig. 3 provides the laboratory proof of this process, by monitoring the dynamics of individual particle hydration in real time. A rough estimate of the diffusion time of the myrcene droplets, shown in Fig. 3, can be obtained using the approach of Shiraiwa et al.17 which yields an effective diffusion coefficient of 1.5 × 10−10 cm2 s−1 using a characteristic time scale of diffusion of 3 h which is the approximate e-folding time of the penetration of the particle by water. This value is compliant with the recent estimations of Lienhard et al. and Price et al., as it lies between those two estimates.12,33 Such transitional core–shell morphologies, as seen in Fig. 3, might explain the persistent ice nucleation activity of high viscosity organic aerosol particles, even at comparably high temperatures, which has been observed in laboratory studies.34,35
We note that although water is taken up by the droplets the droplet diameters in our images stay constant (Fig. 3a). We attribute this to the droplet being deposited on a hydrophobic glass surface and thus increased droplet volume due to water uptake results in an increase of the droplet height rather than an increased droplet diameter.
To study the effect of atmospheric oxidative chemical aging upon viscosity, pure oleic acid particles were exposed to a variety of ozone concentrations, from 1.5 to 868 ppm. Whilst oxidized oleic acid particles represent a simple model SOA system, it is noted that they contain the key features governing viscosity in oxidized atmospheric SOA particles: namely, (i) the presence of high molecular weight products due to oligomerization and (ii) compounds with oxidized functional groups such as alcohols, peroxides and carboxylic acids.29,36–39 Thus, oleic acid particles provide a suitable model system to test the effects of atmospheric oxidative processing on particle viscosity with our technique. Furthermore, we tested a large range of ozone concentrations (1.5–868 ppm) to help constrain the kinetic model, which we applied to evaluate our experiments (see below).
BODIPY-C10, a more lipophilic dye compared to Cy3, was used as a molecular rotor to measure viscosity during oleic acid oxidation. The calibration of BODIPY-C10 was previously reported (Fig. S2†) and it was extensively used for viscosity studies in lipid-rich systems.22,40,41 The BODIPY dye is unreactive to ozone under the conditions of the experiment, see Fig. S7a† and accompanying text.
Spatially resolved FLIM images were acquired in real time before, during and after oxidation. The evolution of particle viscosity through fluorescence lifetime images (Fig. 4a and S6†), and the associated lifetime histograms show an increase in fluorescence lifetime from 1.3 ns to 4.5 ns (Fig. 4b), giving a viscosity increase upon oxidation from ca. 80 to >1000 mPa s (Fig. 4c). The kinetics of the ozonolysis is dependent on particle size (Fig. 4c). This is also evident in the FLIM images (Fig. 4a) where the smaller droplets change colour faster than the larger ones. The kinetics of the viscosity change show a size dependence that is proportional to the reciprocal of the radius which suggests surface uptake limitations to ozone uptake as previously reported,42,43 this is evidenced in Fig. S7e.† All particles approach the same final viscosity, and hence lifetime histogram, indicating that the product composition in completely oxidized particles is similar, irrespective of particle size (Fig. S7e†). However, the final viscosity attained is slightly dependent on the concentration of ozone used (1.5–868 ppm), with lower concentrations leading to somewhat higher viscosities (Fig. S7f†). Higher (and non-atmospherically relevant) ozone concentrations possibly impede secondary chemical reactions thereby reducing the production of high molecular weight (and hence high viscosity) products. These measurements demonstrate that atmospheric chemical aging processes can increase the viscosity of particles, which has the potential to slow down heterogeneous reaction kinetics, and provide a direct first quantification of such the processes.
Fig. 4 Time-dependent FLIM imaging of oleic acid droplets of varied diameter upon exposure to ozone. (a) FLIM images recorded at 0, 120, 160, 200, 220, 260, 300, 360 and 540 s after the beginning of exposure to 377 ppm of O3; rainbow scale under each image represents the lifetime values from 1 to 4.8 ns and scale bar is 40 μm. The high concentration of O3 was chosen to optimise the experimental running time, however, the observations remain the same for O3 concentrations down to 1.5 ppm. (b) Lifetime histograms extracted from the images in (a). (c) Kinetic response of the individual droplet viscosity to exposure to 12.5 ppm of O3 for various droplet sizes. The lifetime recorded in the absence of ozone (Fig. S7†) does not change on this timescale. (d) Selected traces from (c) plotted together with simulated viscosity curves obtained using the KM-SUB model (see ESI for further details†). (e) Experimental monomer:dimer:trimer:tetramer signal intensities normalized to the signal intensity of the sum of all major monomers obtained from a fully oxidised sample using mass spectrometry are shown along with concentration ratios obtained in a corresponding model simulation (see also Fig. S8†). |
Given the structures of oleic acid and its oxidation products, we expect the rotor Bodipy-C10 to partition effectively in all phases of the final oxidised particle and as such we argue that our measurement of microscopic viscosity is representative of a bulk viscosity value.
Kinetic modelling of the bulk viscosity change during oleic acid oxidation using the kinetic multi-layer model for aerosol surface and bulk chemistry KM-SUB44 is shown in Fig. 4d and reproduces the main features of the experimental curves remarkably well. At the same time it largely reproduces the overall compositional distribution of monomeric and oligomeric oxidation products (Fig. 4e) compared to mass spectrometry results. The model provides a set of kinetic parameters, which holds true for a range of ozone concentrations and particle diameters (see Fig. S9 and Table S1†). The modelled oleic acid loss is almost perfectly proportional with the reciprocal of the particle radius. Hence reactive loss scales with surface area which is indicative of a surface or near–surface reaction.
At the final viscosity of ∼1000 mPa s after oxidation, the characteristic diffusional timescale of all components within the particle should still be sufficiently fast to allow for rapid diffusion and a well-mixed system in thermodynamic equilibrium.21 However, a striking observation is that the FWHM of the lifetime histograms increases significantly with ozone exposure within individual oleic acid droplets (Fig. 5a), more than could be expected from a natural increase in FWHM with increasing lifetime. This is seen more clearly in Fig. 5b, where the histograms on five stages of exposure from 60 to 920 s are plotted on different scales, but with the same increment corresponding to the same colour hue. The width of the lifetime range is always 1 ns, corresponding to the same colour hue, whereas the actual range changes from 0.8 to 1.8 ns (Fig. 5b – 60 s), 1.2 to 2.2 ns (Fig. 5b – 140 s), etc. It can clearly be seen that at the initial stages of oxidation the particle possesses a low degree of heterogeneity (at 60 s exposure FWHM is 7.7% of the peak lifetime), whilst as the oxidation continues a significant heterogeneity appears, evident by the spread of the histogram (at 920 s FWHM is 14.5% of the peak lifetime). An increase in the FWHM is indicative of a greater spread of viscosities and hence more heterogeneity within an individual particle. Since diffusion is non-limiting21 then we hypothesise that the observed heterogeneity might be due to liquid–liquid phase separation that has been previously observed for ambient organic particles in the Amazon45 as well as laboratory-generated organic/inorganic particles.46,47 The mass spectrum of fully oxidized oleic acid particles (see Fig. S8†) shows a wide range of species in the mass range ca. 100–900 m/z. Typically the smaller molecules are highly oxidized and hence extremely polar whereas the larger molecules, which are formed by oligomerization, are essentially non-polar.37 It seems likely that the small polar molecules will be immiscible with the large non-polar oligomers. The pixel positions of the ‘domains’ of high or low viscosity are non-permanent (Movie S2†). This unexpected observation of high order of intra-aerosol heterogeneity is not explained by diffusion fronts. In future studies, to fully capture the chemistry, and hence the atmospheric ageing of aerosols, this additional level of complexity needs to be accounted for by theory. Given that molecular rotors probe the length scales of the ‘solvent cage’, i.e. the volume associated with their rotational diffusion, we expect this heterogeneous viscosity distribution to remain in atmospherically-relevant 100 nm particles, which are too small to be studied with our diffraction resolution-limited technique. At the same time we do not expect these viscous domains to contribute to the ‘bulk’ particle viscosity, manifesting itself in the rate of shape change and/or bounce of the particle and as such their presence is likely to be missed by bulk viscosity measurements.
In contrast, the microscopic viscosity measured here in myrcene and α-pinene SOA particles was about two orders of magnitude lower than the bulk particle viscosity of SOA particles determined in other studies. However, our experiments still indicate high microscopic viscosity at low RH, which may for example hinder hydroscopic growth and affect ice nucleation pathways.
Using the dynamic nature of FLIM measurements we have detected changes in microscopic viscosity of model aerosol particles due to changes in conditions, such as RH or altered chemical composition due to oxidative ageing. The high spatial resolution of the FLIM technique allowed detecting heterogeneous distributions of viscosity within individual particles, both during hydration of SOA and during oxidation of oleic acid droplets. In the latter case we have detected high viscosity domains maybe indicating unexpected liquid–liquid phase separation.
Overall, our measurement results demonstrate that organic aerosol particles may exhibit a wide range of viscosities, spanning at least four orders of magnitude depending on atmospheric conditions and chemical aging. Our methods and investigations have gone beyond limitations of earlier studies and provide new insights into chemical processes influencing viscosity and into intra-particle heterogeneity and dynamics of microscopic viscosity not previously observed. A more complete understanding of the atmospheric processes controlling aerosol viscosity is needed to assess their effects on heterogeneous chemistry, particle growth and hygroscopicity. An improved understanding of the temporal and spatial evolution of organic aerosol particle viscosity in the atmosphere will allow the incorporation of these processes in atmospheric models to increase our understanding of aerosol processes and effects in the climate system.
The fluorescence lifetime decays of BODIPY-C10 and Cy3 were measured in mixtures of methanol/glycerol and sucrose/water, at a working dye concentration of ca. ∼10 μM. The dye mixtures were measured in quartz cuvettes (BODIPY-C10) and 8-well μ-Slide chamber (Ibidi) (Cy3) via time correlated single photon counting (TCSPC). BODIPY-C10 decays were measured on a Jobin Yvon IBH data station (5000F, HORBIA Scientific Ltd.) using a 467 nm 1 MHz pulsed NanoLED (N-467, HORBIA Scientific Ltd.) for excitation. Emission was captured at 515 ± 5 nm with a long pass filter at 470 nm until a peak count >10000 was reached; 1024 ADC and collection rate <2% was maintained. Cy3 decays were measured using the FLIM system (see below). The calibration plot for BODIPY-C10 is linear between ca. 5 and 1500 mPa s (ref. 50) and follows the Förster Hoffmann equation for fluorescence lifetime22,51 (eqn (1)).
(1) |
logτf = 0.4569logη − 0.75614 | (2) |
Previously we have shown that Cy3 lifetimes do not follow the Förster Hoffmann eqn (1) at viscosities greater than 30 mPa s.23 For this work, the Cy3 viscosity–fluorescence lifetime response was calibrated for the viscosity range 1 to 106 mPa s (Fig. S2b†) using calibrant solutions of sucrose in water at concentrations up to 80% w/w sucrose. The time resolved fluorescence signal from Cy3 is found to be biexponential over all viscosities probed (Fig. S2d†). The mean fluorescence lifetime can be linked to viscosity through the use of a Hill function53 shown in eqn (3). Where the mean fluorescence lifetime, τf, is the intensity-weighted mean, defined as (A1τ12 + A2τ22)/(A1τ1 + A2τ2), where τ1 and τ2 are individual fitted exponential lifetimes, and A1 and A2 are their relative amplitudes as percentages. The relationship between the mean fluorescence lifetime data for Cy3 and viscosity is accurately described by the Hill function, eqn (3), Fig. S2b.†
τf = 2.8054η0.475(11.436 + η0.475)−1 | (3) |
The viscosity of methanol/glycerol mixtures for the entire calibration range was measured with a viscometer (Stabinger Viscometer SVM 3000, Anton Paar). The Cy3 calibration solutions, that used non-saturated sucrose concentrations (<67% w/w), were prepared by mixing increasing concentrations of sucrose in water and adding <0.5% Cy3 stock, and the viscosities were measured using a rheometer (HR03, TA Instruments). However, to achieve higher viscosities, supersaturated sucrose/water solutions were prepared, with sucrose concentrations >67% w/w; for these the direct rheological measurements were impossible due to sucrose precipitation. Instead, the theoretical model using Gènotelle's equation54 was used to predict the solution viscosity. The supersaturated solutions were prepared by controlled water evaporation, in which solutions of 40% (w/w) sucrose/water (ca. 5 ml) containing <0.2% Cy3 stock were heated at 100 °C in a round bottom flask under vacuum (150 mbar) for between 5–10 min. The water activity in each sample was determined using a Karl Fischer titrator (Mettler Toledo).55 The known water percentage in the sample allowed Gènotelle's equation to be applied, as shown in eqn (4).
log10η/η* = a1 + a2x + Φ(b1 + b2xn); |
Φ = (30 − t)/(91 + t) | (4) |
Lifetime images were acquired using a time correlated single-photon counting (TCSPC) module (SP830, Becker & Hickl GmbH) and tuneable multi-photon laser as an excitation source (680–1080 nm, 80 MHz, 140 fs, Vision II, Coherent Inc.). Two-photon excitation of aerosols was performed at 840 nm and laser power maintained <200 mW prior to entering the microscope with an image format of 128 × 128. Cy3 lifetime images were acquired until a peak count of 500/pixel was reached across the majority of the image. It was established that the lifetime of Bodipy-C10 in oleic acid could change upon prolonged laser exposure, possibly due to the oxidation of the oleic acid, and so the following low power settings were used in these experiments: <100 mW, 64 × 64 image size, and collection times of 20–30 s. This ensured that the Bodipy-C10 lifetime in oleic acid in an air environment did not change over a period of up to 24 hours. Lifetime images were analysed using either the TRI2 software (for Bodipy-C10) (Version 2.7.6.1, Gray Institute for Radiation Oncology and Biology)56 or FLIMfit (for Cy3, where offset correction was necessary, see below) (OMERO) and decays fitted using monoexponential (Bodipy-C10) or biexponential (Cy3) models. We have checked for multiple samples that TRI2 and FLIMfit produces identical results for samples, where the offset correction was not an issue.
Cy3 FLIM data (images and individual calibration decays) were exported and analysed in FLIMfit software (OMERO). Due to the long decay lifetimes, decays were incomplete within the acquisition time window, which did not allow the direct fitting of an offset parameter for each trace accurately. To remove the offset (and hence the uncertainty in the lifetime values), the dark counts were subtracted from both the IRF and the individual decay traces by recording a background signal without the sample on the microscope stage. A Matlab code was written to remove the background from each image by subtracting the corresponding dark counts from any pixel that had counts above zero. The data was then analysed using the biexponential decay model and Levenberg–Marquardt algorithm without an offset fitting parameter.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/c5sc02959g |
This journal is © The Royal Society of Chemistry 2016 |