Satoko Hayashi*,
Yuji Sugibayashi and
Waro Nakanishi*
Department of Material Science and Chemistry, Faculty of Systems Engineering, Wakayama University, 930 Sakaedani, Wakayama, 640-8510 Japan. E-mail: hayashi3@sys.wakayama-u.ac.jp; nakanisi@sys.wakayama-u.ac.jp; Fax: +81 73 457 8353; Tel: +81 73 457 8252
First published on 22nd June 2017
The nature of EH2-*-π(C14H10) interactions (E = O, S, Se and Te) of an anthracene system was elucidated by applying QTAIM dual functional analysis (QTAIM-DFA) after clarification of the structural features with quantum chemical (QC) calculations. π-HB (hydrogen bond) interactions were detected for E = O, S, Se and Te, whereas π-EB (chalcogen bond) interactions were observed for E = O in (EH2)-*-π(C14H10), where the bond paths connected H in EH2 to C14H10 in π-HB, and they connected E in EH2 to C10H8 in π-EB. The QTAIM-DFA parameters of (R, θ) and (θp, κp) were evaluated for the interactions via analysing the plots of Hb(rc) versus Hb(rc) − Vb(rc)/2 for the interactions at the bond critical points. Data obtained from the perturbed structures around the fully optimized structures were employed for the plots, in addition to the fully optimized structures. Data obtained from the fully optimized structures were analysed using (R, θ), which corresponded to the static nature, and those obtained from the perturbed structures were analysed using (θp, κp), which represented the dynamic nature of the interactions, where θp corresponds to the tangent line of the plot and κp is the curvature. The θ and θp values are less than 90° for all the interactions examined, except for the iH-*-11C(π) interaction in TeH2-*-C14H10 (C1: IIBAtc), where iH is located closer to the centre of C14H10. Therefore, the interactions examined were predicted to have vdW nature, appeared in the pure-CS (closed shell) interaction region, although iH-*-11C(π) was predicted to have the pure-CS/typical-HB nature without covalency. Additionally, the π-HB interaction seems to be slightly stronger than π-EB in (OH2)-*-π(C14H10).
Very recently, we reported the nature of the EH2⋯π interactions for benzene and naphthalene π-systems, together with their structural features.1,2,10,11 The H atom(s) in EH2 is (are) connected to the benzene π-system, EH2⋯π(C6H6), via bond paths (BPs). Through careful examination of the BPs in the adducts, another type of interaction was also detected in H2E⋯π(C6H6), where E in EH2 is joined to the benzene π-system via a BP. Such interaction was called a chalcogen π-type (π-EB) bond. EH2 is connected to the C atoms or BCPs (bond critical points: rc: *)21 on the CC bonds of C6H6 by BPs. In the case of the benzene π-system, π-EBs seem more important relative to π-HBs, although the predicted importance may change depending on the calculation system.2
What happens if EH2 (E = O, S, Se and Te) interacts with the anthracene π-system? The anthracene π-system contains two types of (three) benzene π-systems and one type of (two) naphthalene π-system, in addition to the original anthracene π-system. What are the differences and similarities in the EH2⋯π interactions between the anthracene π-system and the π-systems of naphthalene and benzene? The nature of the interactions in (EH2)⋯π(C14H10) (E = O, S, Se and Te) is elucidated together with its structural feature. Scheme 1 illustrates some of the structures expected for (EH2)-*-π(C14H10) of the 1:
1 adducts, which are inferred from the structures of (EH2)-*-π(C10H8) and (EH2)-*-π(C6H6). Type IIAAtc and type IICAtc in (EH2)⋯π(C14H10) are defined for the adduct, where EH2 locates on the central and outer benzene rings of anthracene, respectively, whereas it is above the 11C–12C (or 13C–14C) bond in type IIBAtc. The structures for the 1
:
1 adduct of (EH2)-*-π(C6H6) and (EH2)-*-π(C10H8) are also shown in Scheme 1 for convenience of discussion. The optimized structures are called type IaBzn, IbBzn and type IIBzn for (EH2)-*-π(C6H6) and type INap and type IINap for (EH2)-*-π(C10H8).
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Scheme 1 Structures expected for (EH2)⋯π(C14H10) (E = O, S, Se and Te), based on that optimized for (EH2)⋯π(C6H6) and (EH2)⋯π(C10H8). |
The QTAIM (quantum theory of atoms-in-molecules) approach, introduced by Bader22,23 enables the analysis of the nature of chemical bonds and interactions.24–30 Interactions seem to be defined by the corresponding BPs, but we must be careful to use the correct terminology with the concept.31 BCP is an important concept in QTAIM, which is a point along the BP at the interatomic surface, where charge density, ρ(r), reaches a minimum.32 It is denoted by ρb(rc), in addition to other QTAIM functions at BCPs, such as Laplacians of ρ(r) (∇2ρb(rc)), total electron energy densities Hb(rc), potential energy densities Vb(rc) and kinetic energy densities Gb(rc), together with kb(rc) (= Vb(rc)/Gb(rc)).
Recently, we proposed QTAIM dual functional analysis (QTAIM-DFA),33–36 according to QTAIM.22–30,37 QTAIM-DFA enables experimental chemists to analyse their own results concerning chemical bonds and interactions with their own image.38 QTAIM-DFA provides an excellent possibility for evaluating, classifying and understanding weak to strong interactions in a unified form.33–36 To elucidate the nature of the interactions in question with QTAIM-DFA, Hb(rc) is plotted versus Hb(rc) − Vb(rc)/2 [= (ħ2/8m)∇2ρb(rc)], where both the x and y axes are given units of energy. In our treatment, data for perturbed structures around fully optimized structures are employed for the plots, in addition to the fully optimized structures.33–36 We propose the concept of “the dynamic nature of interactions” which originated from the data containing the perturbed structures.33a,34–36,39
Data from the fully optimized structures correspond to the static nature of interactions. QTAIM-DFA is applied to typical chemical bonds and interactions and rough criteria are established. The rough criteria can distinguish the chemical bonds and interactions in question from others. QTAIM-DFA and the criteria are explained in the ESI with Schemes S1 and S2, Fig. S1 and eqn (S1)–(S7).‡ The basic concept of the QTAIM approach is also surveyed.
QTAIM-DFA is applied to elucidate the dynamic and static nature of the interactions in (EH2)-*-π(C14H10) (E = O, S, Se and Te). The discussion is limited to the 1:
1 adducts of (EH2)-*-π(C14H10) for simplicity. Herein, we present the results of the investigations on the nature of the interactions in question. The interactions are classified and characterized as a reference by employing the criteria.
QTAIM functions were calculated by employing the wfn files using the Gaussian 09 program package40 with the same method for optimizations, and the data were analysed with the AIM2000 program.44 The normal coordinates of internal vibrations (NIV) obtained by the frequency analysis were employed to generate the perturbed structures,35,36 which is explained in eqn (1). The k-th perturbed structure in question (Skw) was generated by the addition of the normal coordinates of the k-th internal vibration (Nk) to the standard orientation of a fully optimized structure (S0) in the matrix representation.35 The coefficient fkw in eqn (1) controls the difference in the structures between Skw and S0: fkw is determined to satisfy eqn (2) for the interaction in question, where, r and r0 stand for the distances in question in the perturbed and fully optimized structures, respectively, with a0 of Bohr radius (0.52918 Å). The perturbed structures with NIV correspond to that with r being elongated or shortened by 0.05a0 or 0.1a0, relative to r0, as shown in eqn (2). Nk of five digits are used to predict Skw. The selected vibration must contain the motion of the interaction in question most effectively among all the zero-point internal vibrations.
Skw = S0 + fkwNk | (1) |
r = r0 + wa0 (w = (0), ±0.05 and ±0.1; a0 = 0.52918 Å) | (2) |
y = co + c1x + c2x2 + c3x3 | (3) |
(Rc2: square of correlation coefficient).
In the QTAIM-DFA treatment, Hb(rc) is plotted versus Hb(rc) − Vb(rc)/2 for data of five points of w = 0, ±0.05 and ±0.1, as shown in eqn (2). Each plot is analysed using a regression curve of the cubic function, as shown in eqn (3), where (x, y) = (Hb(rc) − Vb(rc)/2, Hb(rc)) (Rc2 > 0.99999 usually).45
The type IIAAtc structure optimized for (OH2)-*-π(C14H10) with MP2/BSS-F was apparently different from type IIBAtc, as confirmed by the r1 values. In the case of (SH2)⋯π(C14H10), one structure was optimized, which was close to the type IIAAtc structure if initially assuming a typical type IIAAtc structure. The type IIAAtc structure optimized for (SH2)⋯π(C14H10) [SH2⋯π(C14H10) (C1: IIAAtc)] seems somewhat distorted from the Cs symmetry.46 The search converged to another one, if started assuming typical type IIBAtc and type IICAtc structures, which are close to type IIAAtc. Indeed, their r1 values are very close to each other, but the ϕ2 and ϕ3 values seem meaningfully different for the two types (Fig. 1c and d, respectively). Therefore, the second structure is (tentatively) called type IIBAtc, herein. No type IAtc structures were detected after similar treatment, even if optimizations started from those very close to type IAAtc.
Table 1 collects the structural parameters selected for the optimized structures of (EH2)-*-π(C14H10) (E = O, S, Se and Te), r1, r2, r3, θ1, θ2, θ3, ϕ1, ϕ2 and ϕ3, which are defined in Scheme 2. The optimized structures are not shown in the figures, but they can be found in molecular graphs, which are drawn on the optimized structures (see Fig. 1). What factors appear to control the optimized structures? We compared the H⋯H distance in EH2, r(H, H: EH2), with the 11C⋯13C distance in C14H10, r(11C, 13C: C14H10). Indeed, r(H, H: EH2) for E = O (1.522 Å), S (1.931 Å), Se (2.088 Å) and Te (2.361 Å) is shorter than r(11C, 13C: C14H10) (2.452 Å for the central benzene ring), but the differences in r (Δr = r(C, C: C14H10) − r(H, H: EH2)) are larger than 0.5 Å for O (Δr = 0.9303 Å) and S (0.5215 Å), whereas they are smaller than 0.4 Å for Se (0.3644 Å) and Te (0.0913 Å) (see Table S2 of the ESI‡). The type IIBAtc structures of (EH2)-*-π(C14H10) (E = O, S, Se and Te) would form with no limitations of Δr, whereas it may be necessary for Δr larger than around 0.5 Å to give the type IIAAtc structures (E = O and S). In the case of type IIBAtc, one H in EH2 seems to be slightly above the 11C⋯13C bond for E = S, Se and Te, but OH2 seems to exist almost right above the 11C⋯13C bond, which may also be controlled by Δr. Indeed, the difference in Δr between E = S and Se seems small, at a first glance, but the small difference would play an important role in the appearance of the type IIAAtc structure.
Species (X–Y) (symmetry: type) | r1 (Å) | r2 (Å) | r3 (Å) | θ1 (°) | θ2 (°) | θ3 (°) | ϕ1 (°) | ϕ2 (°) | ϕ3 (°) | ΔEESd (kJ mol−1) | ΔEEnte (kJ mol−1) |
---|---|---|---|---|---|---|---|---|---|---|---|
a BSS-F: the 6-311+G(3df) basis set was employed for O, S and Se and the basis set of the (7433111/743111/7411/2 + 1s1p1d1f) type for Te with the 6-311++G(d,p) basis set for C and H.b See Scheme 2 for the structural parameters.c Optimized structures are not given in the figures but can be found in the molecular graphs drawn on the optimized structures (see Fig. 1).d ΔEES = EES((EH2)-*-π(C14H10)) − (EES(EH2) + EES(C14H10)) on the energy surface.e ΔEEnt = EEnt((EH2)-*-π(C14H10)) − (EEnt(EH2) + EEnt(C14H10)) with the thermal corrections to enthalpies.f Very close to Cs.g The structures are very close to each other; however, they are analysed as two different structures here since the differences in ϕ2 and ϕ3 seem meaningful. They are called IIAAtc and IIBAtc. | |||||||||||
OH2⋯π(C14H10) (C1:f IIAAtc) | 3.2865 | 0.9629 | 0.9629 | 89.9 | 51.8 | 103.5 | −92.5 | −1.7 | 2.8 | −22.7 | −18.1 |
H2O⋯π(C14H10) (C1: IIBAtc) | 3.6682 | 0.9631 | 0.9624 | 63.4 | 69.6 | 103.6 | −93.8 | −14.3 | 3.5 | −21.9 | −17.6 |
SH2⋯π(C14H10) (C1: IIAAtc)g | 3.6162 | 1.3389 | 1.3400 | 80.5 | 60.6 | 92.2 | −92.1 | −6.4 | −3.3 | −28.7 | −25.0 |
SH2⋯π(C14H10) (C1: IIBAtc)g | 3.6165 | 1.3389 | 1.3400 | 80.5 | 60.6 | 92.2 | −91.8 | −2.1 | −1.9 | −28.7 | −25.0 |
SeH2⋯π(C14H10) (C1: IIBAtc) | 3.6959 | 1.4597 | 1.4603 | 78.9 | 61.5 | 91.3 | −91.5 | 3.0 | −0.2 | −31.7 | −28.3 |
TeH2⋯π(C14H10) (C1: IIBAtc) | 3.7703 | 1.6576 | 1.6578 | 78.1 | 64.2 | 91.5 | −89.9 | −11.4 | −17.5 | −40.5 | −36.8 |
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Scheme 2 Structural Parameters Illustrated for Type IIAtc of (EH2)-*-π(C14H10) (E = O, S, Se and Te). |
What are the stabilization energies in the formation of the adducts? Table 1 contains the ΔE (ΔEES and ΔEEnt) values for (EH2)⋯π(C14H10), where, ΔEES and ΔEEnt are the ΔE values on the energy surfaces and those with the thermal corrections to enthalpies, respectively [ΔE = (E((EH2)⋯π(C14H10)) − (E(EH2) + E(C14H10))]. An excellent correlation was obtained in the plot of ΔEEnt versus ΔEES (y = 5.262 + 1.047x; Rc2 = 0.998 (n = 6: number of data points)), although is not shown in the figure. Therefore, the ΔEES values will be employed for the discussion of ΔE. A good correlation was also obtained in the plot of ΔEES versus r1, if the data for H2O⋯π(C14H10) (C1: IIBAtc) are neglected (y = −1410.42 + 820.87x – 121.30x2; Rc2 = 0.975 (n = 5)), where the structure of H2O⋯π(C14H10) (C1: IIBAtc) seems different from the others.
What are the relations between ΔEAtc, ΔENap and ΔEBzn? The ΔENap values are linearly proportional to ΔEBzn in type II. The ratio of ΔENap/ΔEBzn becomes larger in the order of E = O (ΔENap/ΔEBzn = 1.34) < S (1.60) < Se (1.68) < Te (1.75), which shows a substantial chalcogen dependence. On the other hand, the ΔEAtc/ΔENap ratio seems almost constant for E = O (ΔEAtc/ΔENap = 1.01) < S (1.07) < Se (1.09) < Te (1.11). The different basis sets for Te may somewhat affect the evaluated values for E = Te, which are from the Sapporo Basis Set Factory, whereas the others are from the Gaussian09 program. What mechanisms operate to control the ratios? It is difficult to clarify this, however, we examined the ratios of r1:
Bzn/r1
:
Nap and r1
:
Atc/r1
:
Nap. The r1
:
Bzn/r1
:
Nap ratios become larger in the order of 1.01 (E = O) < 1.13 (S) < 1.15 (Se) < 1.19 (Te) and the r1
:
Atc/r1
:
Nap ratios increase similarly in the order of 1.00 (E = O) < 1.09 (S) < 1.11 (Se) < 1.13 (Te). However, the chalcogen dependence of the ratios seems somewhat smaller for r1
:
Atc/r1
:
Nap, relative to the case for r1
:
Bzn/r1
:
Nap. These results would be responsible for the observed ΔE/ΔE ratios, although the vdW and/or covalent radii of chalcogens must also be carefully examined for the discussion.
Before the application of QTAIM-DFA to (EH2)⋯π(C14H10), the molecular graphs and contour plots are examined next.
Interaction (X-*-Y)e | Typeb | ρb(rc) (eao−3) | c∇2ρb(rc)c (au) | Hb(rc) (au) | kb(rc)d | R (au) | θ (°) | Freq (cm−1) | kf (unitf) | θp (°) | κp (au−1) | Classification characterization |
---|---|---|---|---|---|---|---|---|---|---|---|---|
a BSS-F: the 6-311+G(3df) basis set employed for O, S and Se and the basis set of the (7433111/743111/7411/2 + 1s1p1d1f) type for Te with the 6-311++G(d, p) basis set for C and H.b See Scheme 1 and Fig. 1.c c∇2ρb(rc) = Hb(rc) − Vb(rc)/2, where c = ħ2/8m.d kb(rc) = Vb(rc)/Gb(rc).e The optimized structure has C1 symmetry and atoms taking part in the interaction are shown in bold with BCP denoted by *.f mDyne Å−1.g Very close to Cs symmetry.h iH and oH in EH2 stand for the atoms taking part in the interactions, which are placed more inside and more outside, respectively, in relation to the centre of C14H10.i Vary large value of 1259 au−1. | ||||||||||||
OHH-*-11(13)C(π) | IIAAtcg | 0.0060 | 0.0024 | 0.0007 | −0.814 | 0.0025 | 72.6 | 108.7 | 0.0411 | 74.5 | 8.0 | p-CS/vdW |
H2O-*-13C(π) | IIBAtc | 0.0069 | 0.0029 | 0.0009 | −0.831 | 0.0031 | 73.9 | 104.5 | 0.0346 | 79.3 | 18.1 | p-CS/vdW |
SoHiH-*-11C(π)h | IIAAtc | 0.0072 | 0.0027 | 0.0009 | −0.807 | 0.0029 | 72.1 | 65.9 | 0.0151 | 72.2 | 1.1 | p-CS/vdW |
SiHoH-*-13C(π)h | IIAAtc | 0.0065 | 0.0024 | 0.0007 | −0.835 | 0.0025 | 74.2 | 65.9 | 0.0151 | 74.3 | 145.7 | p-CS/vdW |
SoHiH-*-11C(π)h | IIBAtc | 0.0070 | 0.0027 | 0.0009 | −0.799 | 0.0029 | 71.5 | 65.8 | 0.0161 | 73.6 | 37.3 | p-CS/vdW |
SiHoH-*-13C(π)h | IIBAtc | 0.0065 | 0.0024 | 0.0007 | −0.836 | 0.0025 | 74.2 | 65.8 | 0.0161 | 73.4 | 61.8 | p-CS/vdW |
SeoHiH-*-11C(π)h | IIBAtc | 0.0072 | 0.0028 | 0.0010 | −0.789 | 0.0029 | 70.8 | 54.6 | 0.0158 | 72.7 | 30.4 | p-CS/vdW |
SeiHoH-*-13C(π)h | IIBAtc | 0.0070 | 0.0025 | 0.0007 | −0.846 | 0.0026 | 75.0 | 54.6 | 0.0158 | 74.2 | 37.1 | p-CS/vdW |
TeoHiH-*-11C(π)h | IIBAtc | 0.0077 | 0.0028 | 0.0008 | −0.829 | 0.0029 | 73.7 | 50.5 | 0.0086 | 93.8 | i | p-CS/t-HBnc |
TeiHoH-*-13C(π)h | IIBAtc | 0.0088 | 0.0031 | 0.0008 | −0.849 | 0.0032 | 75.3 | 23.9 | 0.0028 | 82.9 | 299.8 | p-CS/vdW |
The ΔrBP values are small (ca. 0.03 Å) for iBP (SoHiH-*-11C(π)) and iBP (SeoHiH-*-11C(π)) in (EH2-*-π(C14H10)) (C1: IIBAtc). Thus, the iBPs can be approximated as straight lines. However, the ΔrBP value is large (0.41 Å) for oBP (SeiHoH-*-11C(π)), which seems difficult to be approximated by a straight line. The values seem moderate (0.09–0.17 Å) for most of the π-HB and π-EB interactions in EH2-*-π(C14H10) for E = O, S, Se and Te, other than three cases. The BPs could be approximated as almost straight lines to gentle curves. The rBP values are plotted versus RSL in Fig. 3. A very good correlation was obtained for the case of 0.09 ≤ ΔrBP ≤ 0.17 Å, which is shown in the figure. The data for three BPs deviate from the correlation, although two of them can be approximated as straight lines, as mentioned above.
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Fig. 3 Plots of rBP versus RSL for (EH2)-*-π(C14H10) (E = O, S, Se and Te), evaluated with BSS-F at the MP2 level. |
QTAIM-DFA was applied to the interactions between EH2 and C14H10 in EH2-*-π(C14H10) (E = O, S, Se and Te) and the QTAIM functions were calculated for the interactions at BCP. The results are given in Table 2. Fig. 4 shows the plot of Hb(rc) versus Hb(rc) − Vb(rc)/2 for EH2-*-π(C14H10) (E = O, S, Se and Te), which contains the data for the perturbed structures evaluated with MP2/BSS-F. All the data in Fig. 4 appear in the area of Hb(rc) − Vb(rc)/2 > 0 and Hb(rc) > 0, which belongs to the pure-CS (closed shell: p-CS) region. The plots were analysed according to eqn (S3)–(S6) of the ESI‡ by applying QTAIM-DFA. These results are discussed next.
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Fig. 4 Plots of Hb(rc) versus Hb(rc) − Vb(rc)/2 for (EH2)-*-π(C14H10), evaluated with MP2/BSS-F. Compounds with marks are shown in the figure. |
The θ and θp values are less than 90° for all the π-HBs and π-EB in EH2-*-π(C14H10) examined herein, except for the TeiHoH-*-11C(π) interaction in TeH2-*-π(C14H10). Therefore, the π-HBs and π-EB interactions in EH2-*-π(C14H10) in Table 2 are all classified by the pure-CS interactions and characterized as the vdW type (p-CS/vdW), except for TeiHoH-*-11C(π) in TeH2-*-π(C14H10). Although oBP (TeiHoH-*-13C(π)) is predicted to have the nature of (p-CS/vdW), iBP (TeiHoH-*-11C(π)) is predicted to have the nature of (p-CS/t-HBnc). The π-EB interaction in the H2O-*-11C(π) type [(θ, θp) = (73.9°, 79.3°)] is predicted to be somewhat stronger than the π–HB interaction of the OHH-*-11C(π) type [(θ, θp) = (72.6°, 74.5°)] for OH2-*-π(C14H10). The π-HB interactions in the anthracene system are predicted to be very similar to that in the naphthalene system, which seem slightly stronger than that in the benzene system. The results are in accordance with that derived from the energies for the formation of the adducts.
The delocalization indexes and ellipticity are the important parameters to clarify and understand the nature of the (EH2)⋯π interactions.47 The nature of the (EH2)⋯π interactions will be discussed elsewhere based on these parameters for the series of (EH2)⋯π(C6H6), (EH2)⋯π(C10H8), and (EH2)⋯π(C14H10) (E = O, S, Se and Te).
Footnotes |
† Dedicated to Professor Marian Mikołajczyk (Professor at the Centre of Molecular and Macromolecular Studies, Polish Academy of Sciences in Lodz, Poland) on the occasion of his 80th birthday. |
‡ Electronic supplementary information (ESI) available: QTAIM-DFA approach, Cartesian coordinates for optimized structures of (EH2)⋯π(C14H10) (E = O, S, Se and Te). See DOI: 10.1039/c7ra04224h |
This journal is © The Royal Society of Chemistry 2017 |