Sonia Florisa,
Antonella Fais*a,
Antonella Rosab,
Alessandra Pirasc,
Hanen Marzoukid,
Rosaria Meddaa,
Ana M. González-Paramáse,
Amit Kumarf,
Celestino Santos-Buelgae and
Benedetta Eraa
aDepartment of Life and Environmental Sciences, University of Cagliari, Monserrato, CA, Italy. E-mail: fais@unica.it; Tel: +39 0706754506
bDepartment of Biomedical Sciences, University of Cagliari, Monserrato, CA, Italy
cDepartment of Chemical and Geological Sciences, University of Cagliari, Monserrato, CA, Italy
dLaboratory of Transmissible Diseases and Biologically Active Substances, Faculty of Pharmacy, University of Monastir, Tunisia
eGrupo de Investigación en Polifenoles (GIP-USAL), Universidad de Salamanca, Spain
fDepartment of Electrical and Electronic Engineering, University of Cagliari, Cagliari, Italy
First published on 8th July 2019
The chemical composition and biological properties of palm Washingtonia filifera (Lindl.) H. Wendl. seeds are seldom studied. Bearing this in mind, the seeds of W. filifera fruits were analysed for their fatty acid and phenolic composition and their antioxidant activity in addition to their cholinesterase and xanthine oxidase inhibitory activities. Seed extracts were revealed as a good source of phenolics with significant antioxidant activity. The phenolic profile mainly consisted of proanthocyanidins or procyanidin dimers B1–B4 among the major compounds. The highest butyrylcholinesterase inhibitory activity was found in the ethanolic extracts of seeds, with IC50 values of 13.73 ± 1.31 μg mL−1. Seed alcoholic extracts also displayed interesting xanthine oxidase inhibitory activity, with IC50 values ranging between 75.2 ± 17.0 μg mL−1 and 95.8 ± 5.9 μg mL−1. Procyanidin B1, a major component in the extracts, could be an important contributor to that activity, as it was found to possess good xanthine oxidase inhibition capacity (IC50 value of 53.51 ± 6.03 μg mL−1). Docking studies were also performed to predict the binding sites of procyanidins B1 and B2 within the xanthine oxidase structure. In all, W. filifera seeds appear as a promising natural source for the extraction of bioactive compounds with antioxidant and butyrylcholinesterase as well as xanthine oxidase inhibitory potential.
The palm family includes a range of plant species with wide application in human food, some of which may also be of pharmacological interest.7 Few studies, however, exist on Washingtonia palms, a genus belonging to the Coryphoideae subfamily that includes two species: W. filifera and W. robusta. Fruits, including the seeds, of W. filifera have been analysed for their nutritional composition, with the conclusion that they possess a higher concentration of carbohydrates than proteins.8,9 W. filifera fruits and seeds are also relevant sources of dietary oils.8 As for phytochemicals, previously authors10 have studied the antioxidant activities of the aerial part of W. filifera and reported the presence of eight known flavonoids, including various luteolin and C-glycosyl derivatives, together with two newly described compounds, luteolin 7-O-glucoside 4′′-sulfate and 8-hydroxyisoscoparin (i.e., 8-hydroxychrysoeriol 6-C-glucoside).
Flavonoids are a major class of the secondary metabolites of plants that occur ubiquitously in foods of plant origin.11–13 The greatest antioxidant activity appears to be exhibited by the flavanol class, the procyanidin group.14,15
Experimental findings suggest that these molecules can act simultaneously as antioxidants, cholinesterase and xanthine oxidase inhibitors, and anti-fibril agents.16,17 Different biological activities have also been reported for C-glycosylated derivatives, such as anti-inflammatory, antioxidant and anticholinesterase properties.18
Alzheimer's disease (AD) is a neurodegenerative disease that results from the synaptic dysfunction and death of neurons in specific brain regions and circuits, specifically the populations of nerve cells sub-serving memory and cognition.19 Cholinesterase inhibitors are in the first line of pharmacotherapy for mild to moderate AD, delaying the breakdown of acetylcholine released into synaptic clefts and enhancing cholinergic neurotransmission. Several studies have been conducted to discover new substances based on plant products that can inhibit the action of cholinesterase and mitigate the effects of AD, while also with fewer side effects than the drugs currently available.20,21 The phenomena related to AD are mainly initiated and enhanced by oxidative stress, a process referring to an imbalance between antioxidants and oxidants in favour of oxidants. Several medicinal plants have been shown to assist in mitigating dementia; indeed, different medicinal plants can produce a therapeutic effect owing to different properties, including cholinesterase inhibition and antioxidant activity.22
An important enzyme that has been reported to proliferate during oxidative stress is xanthine oxidase (XO), which catalyses the reaction of hypoxanthine to xanthine and xanthine to uric acid.23 In both steps, molecular oxygen is reduced, forming the superoxide anion, followed by the generation of hydrogen peroxide. Therefore, compounds that can inhibit xanthine oxidase may reduce both the circulating levels of uric acid and the production of reactive oxygen species (ROS). The overactivity of XO has been associated with the development of gout.24
In this context, in search of novel sources of bioactive molecules with potential beneficial effects on AD, the phenolic composition and total polyphenol and flavonoid contents, as well as the antioxidant, anti-cholinesterase and anti-XO properties, have been analysed in pulp and seed extracts from W. filifera from two different geographical areas of Tunisia.
The plant materials were washed with deionized water, frozen at −20 °C and then lyophilized. Lyophilization was carried out overnight, using an LIO-5P Freeze Dryer apparatus. The dried material was stored at −20 °C until required.
The fruits of W. filifera, separated as pulp and seeds, were crushed separately and then macerated in different solvent systems to compare the bioactivity of the extracts. The lyophilized plant materials (25 g) were extracted in 100 mL of water (AE, aqueous extract), ethanol (EE, ethanol extract) or methanol (ME, methanol extract) for 72 h at room temperature under continuous stirring. After filtration and centrifugation at 10000 rpm, the ethanol and methanol extracts were concentrated, using a rotary evaporator under reduced pressure at 60–70 °C. For fatty acid analysis, the seeds were also extracted with n-hexane (HE) in a conventional Soxhlet extraction apparatus, and the samples were further concentrated under vacuum on a rotary evaporator.
Soxhlet extractions were performed using 15 g of each sample. The powder plant was transferred into a cellulose extraction thimble and inserted into a Soxhlet assembly fitted with a 100 mL flask. A 50 mL portion of n-hexane was added, and the whole assembly was heated for 6 h using a heating mantle at 60 °C. The extracts were concentrated using a rotary evaporator at 40 °C, and the dry extracts obtained were stored at −20 °C for chemical and biological assays.
A portion of dried fatty acids after saponification was methylated with 1 mL of methanolic HCl (3 N) for 30 min at room temperature, as previously described.25 Fatty acid methyl esters (FAME) were analysed using a gas chromatograph Hewlett-Packard HP-6890 (Hewlett-Packard, Palo Alto, USA) with a flame ionisation detector (FID) and equipped with a cyanopropyl methyl-polysiloxane HP-23 FAME column (30 m × 0.32 mm × 0.25 μm) (Hewlett-Packard).25 Nitrogen was used as a carrier gas at a flow rate of 2 mL min−1. The oven temperature was set to 175 °C; the injector temperature was set to 250 °C; and the detector temperature was set to 300 °C. FAME were identified by comparing the retention times with those of standard compounds and quantified as a percentage of the total amount of fatty acids (g%) using the Hewlett-Packard software.
The results were expressed as the concentration of sample necessary to cause a 50% reduction in the original absorbance (EC50).
Spectrophotometric determinations were made in an Ultrospec 2100 spectrophotometer (Biochrom Ltd, Cambridge, England) using 1 cm path cells and with a FLUOstar OPTIMA microplate reader (BMG Labtech, Offenburg, Germany).
The phenolic compounds present in the samples were identified according to their UV and mass spectra and by comparison with commercial standards when available.
Fatty acid | g/100 g | |
---|---|---|
HES | HEG | |
a Abbreviations: SFA, saturated fatty acids; MUFA, monounsaturated fatty acids; PUFA, polyunsaturated fatty acids. Oil analysis was performed in quadruplicate, and all data are expressed as mean values ± standard deviations (SD); (n = 4). Evaluation of the statistical significance of differences between the two groups was performed using the Student's unpaired t-test with Welch's correction; ap < 0.01; bp < 0.05. | ||
8:0 | 1.06 ± 0.17 | 1.01 ± 0.23 |
10:0 | 1.55 ± 0.24 | 1.61 ± 0.25 |
12:0 | 36.11 ± 4.23 | 33.50 ± 2.70 |
14:0 | 12.26 ± 0.58 | 10.40 ± 0.45a |
16:0 | 6.23 ± 0.29 | 6.32 ± 0.37 |
16:1 | 2.23 ± 0.42 | 3.07 ± 0.33b |
18:0 | 2.62 ± 0.45 | 3.05 ± 0.05 |
18:1n − 9 | 25.09 ± 2.17 | 25.47 ± 1.39 |
18:2n − 6 | 8.40 ± 0.63 | 9.95 ± 1.36 |
18:3n − 3 | 0.04 ± 0.01 | 0.06 ± 0.00 |
18:3n − 6 | 0.02 ± 0.01 | 0.05 ± 0.00 |
20:0 | 0.33 ± 0.43 | 0.08 ± 0.01 |
20:1 | 0.31 ± 0.06 | 0.26 ± 0.19 |
SFA | 60.16 ± 4.03 | 55.97 ± 2.92 |
MUFA | 27.63 ± 2.45 | 28.80 ± 1.58 |
PUFA | 8.47 ± 0.62 | 10.06 ± 1.35 |
Fatty acids | HES | HEG |
---|---|---|
a Oil analysis was performed in quadruplicate and all data are expressed as mean values ± standard deviations (SD); (n = 4). | ||
18:1n − 9 | 304.33 ± 10.93 | 275.41 ± 13.26 |
18:2n − 6 | 102.31 ± 4.21 | 108.19 ± 6.26 |
18:3n − 3 | 0.84 ± 0.04 | 0.88 ± 0.06 |
The HE Gabès (HEG) was characterized by a similar FA profile, with a high level of SFA (56%, with 34% of 12:0), followed by MUFA (29%) and PUFA (10%). The HEG showed a slightly lower level of SFA and higher amounts of UFA than HES. Significant differences were only observed in the levels of myristic acid (14:0), with 12% and 10% for HES and HEG, respectively (p < 0.01), and palmitoleic acid (16:1n − 7), with 2% and 3% for HES and HEG, respectively (p < 0.05). The absolute values of the main UFA determined by HPLC (Table 2) for the HEG were 275.4 ± 13.3 mg g−1, 108.2 ± 6.3 mg g−1 and 0.9 ± 0.1 mg g; for acids 18:1n − 9, 18:2n − 6 and 18:3n − 3, respectively. Both HES and HEG contained lauric acid (12:0) as the main fatty acid (34–36%) but also exhibited a high content of oleic acid (18:1n − 9; 25%). Thus, W. filifera seed oil can be regarded as a lauric-oleic oil because of the abundance of these two fatty acids.8
The FA composition of the HEG and HES oil extracts determined herein was slightly different from that of W. filifera seed oil obtained previously from a Tunisian sample.8 Specifically, like the HEG and HES, the major FA were SFA (43%), followed by MUFA (41%) and PUFA (16%); however, Tunisian seed oil showed oleic acid as the most abundant fatty acid (41%), followed by lauric acid (18%), linoleic acid (16%), myristic acid (11%) and palmitic acid (9%). This result could be ascribable to several factors, e.g., differences in FA metabolism due to the impact of the harvesting location such as climate, soil, and water availability.
The total phenolic and flavonoid contents in the analysed seed extracts are shown in Table 3. The highest total phenolic content was found in ME, followed by EE and AE. MEG showed a total phenolic content two times higher than the corresponding EEG. Very low amounts of phenolic compounds were also detected in the pulp extracts (data not shown). A positive correlation was found between total phenolic content versus flavonoid content (r = 0.98, r2 = 97%), determined in the alcoholic seed extracts, whereas hardly any flavonoids were found in the aqueous extracts.
Total Phenolic mg GAE per g dw | Flavonoid mg QE per g dw | ABTS EC50 μg mL−1 | |
---|---|---|---|
Each value is the mean ± SD of three independent measurements (n = 3). §Below limit of detection. a,b,c,dDifferent letters within the same column denote statistically significant differences between extracts (p < 0.05). *Values of EC50 of EEG, EES, MES, AEG and AES compared to Trolox are significantly different (p < 0.01). | |||
EEG | 325.96 ± 32.20a,b | 215.43 ± 98.61a | 11.11 ± 1.15a,* |
EES | 412.30 ± 115.78a,b | 308.33 ± 137.23a | 9.06 ± 0.35a,* |
MEG | 708.83 ± 169.10 a | 591.98 ± 386.14a | 5.52 ± 0.84b |
MES | 637.4 ± 275.11a,c | 462.60 ± 294.20a | 9.71 ± 1.21a,* |
AEG | 133.54 ± 30.0b | § | 22.64 ± 0.14c,* |
AES | 233.06 ± 33.68b,c | § | 17.78 ± 0.45d,* |
Trolox | 3.4 ± 0.3 |
Phenolic compounds have redox properties, which allow them to act as antioxidants.36 The antioxidant activity of the extracts was assessed by their ability to scavenge the ABTS radical. The results obtained for the seed extracts are included in Table 3. As for the total phenolic content, the aqueous extracts showed lower antioxidant capacity (higher EC50 values) than the alcoholic extracts. The correlation of the total phenol content and ABTS radical scavenging activity was also shown in Fig. S1 (ESI†). This correlation seems logical considering that the Folin–Ciocalteu reagent measures the reducing capacity of a sample, lacking specificity for phenolics. Pulp extracts presented much lower antioxidant capacity than seeds, with the EC50 value for ABTS radical scavenging ability was higher than 150 μg mL−1, which is in line with their low levels of phenolic compounds.
The characterization of individual phenolic compounds was performed by HPLC-DAD/ESI-MS. Data of the retention time, λmax, pseudomolecular ions, main fragment ions in MS2, and tentative identification are presented in Table 4. As can be seen, the sample mostly consists of flavan-3-ols (i.e., catechins and proanthocyanidins). Epicatechin and procyanidin B1 were identified by comparison with standards, whereas the identities of the procyanidin dimers B2–B4 and trimer C2 were tentatively assigned by comparison with data available in our data library. The identities of the remaining compounds were established based on their molecular weights. A point to highlight is the presence of some proanthocyanidins containing possible (epi)afzelechin units as well as A-type linkages. B-type procyanidin dimers (B1–B4) were among the main phenolic compounds in the extracts of W. filifera seeds that, in a previous study, were reported for their different biological activity.37,38 Minor amounts of other flavonoids, mainly quercetin and isorhamnetin derivatives possessing sulfate residues, were also detected. Although flavonoid sulfates are not very common in plants, they have been reported to occur in species of the Palmae family.39 As far as we know, no previous reports have been published on the phenolic profile of W. filifera seeds.
Peak | Rt (min) | λmax (nm) | Pseudomolecular ion [m – H]− (m/z) | MS2 (m/z) | Tentative identification |
---|---|---|---|---|---|
1 | 12.0 | 260, 293 | 331 | Galloylglucose | |
2 | 16.3 | 280, 307 | 451 | (epi)Catechin glucoside | |
3 | 20.2 | 279 | 577 | 451, 425, 407, 289 | B-type procyanidin dimer (B3) |
4 | 20.7 | 279 | 577 | B-type procyanidin dimer (B1) | |
5 | 21.1 | 278 | 865 | 695, 577, 425, 407, 287 | B-type procyanidin trimer (C2) |
6 | 22.5 | 577 | B-type procyanidin dimer (B4) | ||
7 | 22.9 | 577 | B-type procyanidin dimer (B2) | ||
8 | 23.7 | 863 | A-type procyanidin trimer | ||
9 | 25.4 | 1153 | 849, 577, 407, 287 | B-type procyanidin tetramer | |
10 | 27.5 | 278 | 289 | 245, 203, 179, 109 | Epicatechin |
11 | 28.4 | 561 | 435, 407, 289 | (epi)Catechin–(epi)afzelechin dimer | |
12 | 29.4 | 283 | 449 | 287, 269 | Dihydrokaempferol hexoside |
13 | 30.9 | 863 | 711, 575, 423 | A-type procyanidin trimer | |
14 | 32.6 | 865 | B-type procyanidin trimer | ||
15 | 34.1 | 865 | B-type procyanidin trimer | ||
16 | 38.3 | 865 | B-type procyanidin trimer | ||
17 | 39.1 | 1153 | B-type procyanidin tetramer | ||
18 | 40.5 | 865 | B-type procyanidin trimer | ||
19 | 41.4 | 849 | 697, 577, 407, 287 | B-type proanthocyanidin trimer containing one afzelechin unit | |
20 | 43.3 | 254, 353 | 689 | 301 | Quercetin rutinoside sulfate |
21 | 43.8 | 1441 | B-type procyanidin pentamer | ||
22 | 45.3 | 256, 358 | 703 | 315 | Isorhamnetin rutinoside sulfate |
23 | 45.3 | 577 | B-type procyanidin dimer | ||
24 | 46.5 | 849 | B-type procyanidin trimer containing one afzelechin unit | ||
26 | 50.4 | 557 | 315 | Isorhamnetin glucoside sulfate | |
28 | 61.8 | 255, 353 | 463 | 301 | Quercetin glucoside |
29 | 65.1 | 577 | B-type procyanidin dimer | ||
30 | 865 | B-type procyanidin trimer |
The anticholinesterase activity of all the extracts at a concentration of 20 μg mL−1 was checked using AChE/BChE assays.
Table 5 shows the AChE and BChE inhibitory activities of the of W. filifera seeds extracts, compared with those of the standard inhibitor galantamine. The IC50 for AChE was not determined because the inhibition at the highest screened concentration (20 μg mL−1) was less than 40%.
Extracts | AChE% I | AChE IC50 | BChE% I | BChE IC50 |
---|---|---|---|---|
n.d: not determined because the inhibition at the highest screened concentration (20 μg mL−1) was less than 40%. Values were expressed as mean ± SD (n = 3). a,b,cDifferent letters within the same column denote statistically significant differences between extracts (p < 0.05). *Values of the IC50 of EES, MES and AES compared to galantamine are significantly different (p < 0.05). | ||||
EEG | 3.2 ± 0.5 | n.d | 65.6 ± 0.78 | 13.73 ± 1.31a |
EES | 16.5 ± 6.22 | n.d | 53.9 ± 6.5 | 27.30 ± 5.37b,* |
MEG | 7.7 ± 2.22 | n.d | 64.5 ± 9.26 | 15.13 ± 2.05a,c |
MES | 20.9 ± 1.56 | n.d | 63.1 ± 1.91 | 22.6 ± 2.72b,c,* |
AEG | 28.6 ± 7.78 | n.d | 45.6 ± 1.06 | 15.08 ± 1.05a,c |
AES | 38.5 ± 11.6 | n.d | 48.5 ± 1.06 | 18.51 ± 0.001a,c,* |
Galantamine | 0.895 ± 0.043 | 7.65 ± 1.78 |
The IC50 values ranged from 13.73 ± 1.31 μg mL−1 to 27.30 ± 5.37 μg mL−1 in the different seed extracts. There was no statistically significant difference between the IC50 values of EEG, MEG and AEG compared to galantamine. The results obtained revealed that EEG showed very potent BChE inhibitory activity, with IC50 values (13.73 ± 1.31 μg mL−1) close to those of the standard drug galantamine (IC50 = 7.65 ± 1.78 μg mL−1) calculated under the same experimental conditions.
This can be considered a satisfactory result, since the standard inhibitor is a single molecule, while a mixture of numerous compounds exists in the plant extracts.
The inhibitory activity against BChE of a procyanidin B1 standard at a concentration of 20 μg mL−1 was also checked, obtaining a value of 18.98 ± 2.52%.
Thus, anti-BChE activity observed in the seed extracts cannot be mainly attributed to procyanidin B1, even if it is present in high concentrations. However, our findings led us to consider that this compound could contribute to the anti-BChE effect in these extracts.
Several studies on plant AChE inhibitors have been performed;40 however, fewer BChE inhibitors have been identified.41 No ChE inhibitory activity was found for any of the pulp extracts examined (data not shown).
ChEs inhibition has been extensively used as an approach for the treatment of Alzheimer's disease (AD). BChE activity progressively increases in patients with AD, while AChE activity remains unchanged or declines. Therefore, the use of molecules selectively interacting with BChE might have a relevant role in the treatment of patients with advanced AD.
The extracts of W. filifera were proven to have great potential and should be considered in future studies to identify the constituents responsible for the selective BChE inhibitory activity.
The extracts were also evaluated for their inhibition of XO enzyme activity (Table 6).
Extracts | % I | IC50 | Inhibitory mode |
---|---|---|---|
a n.d: not determined because inhibition at the highest screened concentration (150 μg mL−1) was less than 40%. Values were expressed as mean ± SD (n = 3). Values of the IC50 for alcoholic extracts compared to allopurinol were significantly different (p < 0.05). | |||
EEG | 52.4 ± 0.8 | 95.8 ± 5.9* | Mixed |
EES | 63.9 ± 0.1 | 87.0 ± 0.5* | Mixed |
MEG | 72.8 ± 0.3 | 75.2 ± 17.0* | Mixed |
MES | 74.6 ± 0.2 | 76.1 ± 5.2* | Mixed |
AEG | 36.7 ± 0.1 | n.d | n.d |
AES | 37.7 ± 0.1 | n.d | n.d |
Allopurinol | 2.0 ± 0.4 |
It was encouraging to observe that only pulp extracts were inactive against the XO enzyme, while all seed extracts displayed inhibitory activity at 150 μg mL−1, ranging between 36.7 ± 0.1 and 74.6 ± 0.2%. The alcoholic seed extracts showed IC50 values for the XO inhibitory activity in the 75.2 ± 17.0 μg mL−1 and 95.8 ± 5.9 μg mL−1 range, higher than those of the standard drug allopurinol (IC50 = 2.0 ± 0.4 μg mL−1).
Flavan-3-ols, the major compounds in the seed extracts, have been reported to possess inhibitory XO activity.42,43 Epicatechin behaves as a good XO inhibitor.44 Procyanidin B1, one the major components detected in the seed extracts of W. filifera, also revealed good XO inhibition capacity, showing an IC50 value of 53.5 ± 6.0 μg mL−1. As far as we know, no previous reports exist on XO inhibition by this procyanidin.
Molecular docking is a powerful technique that allows the prediction and identification of the most probable binding mode of the ligand to a partner protein.44 Therefore, to predict the best ligand pose within the XO binding site, we performed the docking of ligands procyanidin B1 and B2, which consists of catechin and epicatechin units joined in a beta-configuration. For comparison, the docking of ligands catechin and epicatechin, which are the elementary flavan-3-ol units in these dimers, was also checked.45
For the procyanidin ligands (B1, B2), the two most probable binding sites (Fig. 1) was observed. Binding site 1, which is located a distance from the protein active site exhibited the best docking energy values for both ligands (Table 7). We observed a reasonable overlap in the ligand poses, with procyanidin B1 displaying favourable docking energy.
Protein–ligand | Docking energy (kcal mol−1) | C-score | Cluster size |
---|---|---|---|
XO–procyanidin B1 | −4.6 (site 1) | 0.12 | 28 |
−2.7 (site 2) | 0.22 | 41 | |
XO–procyanidin B2 | −3.8 (site 1) | 0.12 | 28 |
−3.0 (site 2) | 0.22 | 41 | |
XO–catechin | −8.6 kcal mol−1 | 0.19 | 30 |
XO–epicatechin | −9.2 kcal mol−1 | 0.15 | 28 |
On the other hand, binding site 2 (Fig. 1) for both procyanidin ligands (B1, B2) was found to be near the XO protein active site. Interestingly, the binding region for the ligands catechin and epicatechin are in the active site and are in close proximity to binding site 2 of the procyanidin ligands.
Experimental data performed on the seed extracts indicated a mixed-type inhibition against the XO-enzyme. Now, considering that the concentration of procyanidin is pronounced (among the dimers) in the seed extracts, a plausible explanation for the mixed-type inhibition can be established from the spatial location of the predicted binding sites (different from the active site) for the procyanidin ligands. Since experiments revealed very low inhibitory activity for procyanidin B1 against BChE, we do not discuss the docking results of procyanidin B1 and the BChE protein. However, for completeness, we have provided the data in the ESI.†
To delve into the binding mode of the ligands with the XO protein, further examination was made using Ligplot software,46 which revealed a conserved interaction image regarding XO binding for both procyanidins B1 and B2 (Fig. 2) and for catechin and epicatechin (Fig. 3).
For binding site 1 (Fig. 2a and b), we note two additional interactions involving residues Leu 147, Ile 1229 and Pro 1230 and procyanidin B1, thus confirming the better docking energy value with respect to procyanidin B2. On the other hand, for binding site 2, a good overlap between the ligands poses was confirmed by a conserved interaction picture (Fig. 2c and d).
The well-conserved binding regions for the ligands catechin and epicatechin (Fig. 3), involving interactions with amino acid residues Gly799, Glu802, Phe914, Ala1078, Ala1079 and Glu1261 in the active site, confirmed the significantly better docking energy with respect to the procyanidin ligands (B1, B2).
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/c9ra02928a |
This journal is © The Royal Society of Chemistry 2019 |