Nicole
Zerafa
,
Miriam
Cini
and
David C.
Magri
*
Department of Chemistry, Faculty of Science, University of Malta, Msida, MSD 2080, Malta. E-mail: david.magri@um.edu.mt
First published on 23rd November 2020
1,3,5-Triaryl-2-pyrazolines were designed, synthesised and covalently immobilised onto submillimetre TentaGel® polystyrene beads (functionalised with amino-terminated polyethyleneglycol ligands) by peptide bond formation. The molecules are modularly designed based on photoinduced electron transfer (PET) according to electron-donor–spacer–fluorophore–receptor and receptor1–spacer–fluorophore–receptor formats with ferrocene and N,N-dimethylaniline as the electron donor and receptor1. A reference fluorophore–receptor compound, associated with an internal charge transfer (ICT) mechanism, is included for comparison. A carboxylate moiety at the para-position of the 1-phenyl ring assists the molecules with aqueous solubility and serves as the site for covalent attachment to the polystyrene beads. The H+, Fe3+-driven INHIBIT, H+-driven off–on–off and H+-driven NOT logic systems are demonstrated in aqueous methanol and attached onto heterogeneous polymer submillimeter beads. The INHIBIT gate was tested with the stronger oxidant, ammonium persulfate, which resulted in a greater fluorescence quantum yield (Φf = 0.192). A double-tagged polymer bead integrating INHIBIT and off–on–off multi-valued logic was also prepared.
Design, System, ApplicationMolecules with electron-donor–spacer–fluorophore–receptor and receptor1–spacer–fluorophore–receptor systems are demonstrated as molecular logic gates using chemical inputs and a fluorescent light output. A carboxylate moiety at the para-position of the 1-phenyl ring of the 1,3,5-triaryl-2-pyrazoline fluorophore assists the molecules with aqueous solubility and serves as the site for covalent attachment to the polystyrene beads. An application is the discrete labelling of object population sets from proteins and cells to passports and banknotes. |
Molecular-logic computation applies Boolean algebra principles to analogue analytical response curves. Customarily, the sigmoidal response is digitally represented by input–output truth tables and electronic symbols.8 For example, YES logic is represented by modulation in an off–on manner, while NOT logic is represented by on–off switching. H+ and OH− have served as convenient chemical inputs for colorimetric and fluorescent pH indicators for over a century.19 During the past three decades other chemical species (i.e. metal cations, anions, organic substrates, enzymes) have been targeted alone, or in various two-input and three-input combinations according to gate functions such as AND, NAND, OR, NOR and INHIBIT.8
A sensible application of this logic diversity using optical outputs is the labelling of population sets,20 similar to barcodes on items in a grocery store. However, this approach is done more discretely as the fluorescent labels are not visible to the unassisted naked eye without the aid of a light source. The name given to this invention is molecular computational identification (MCID).21 The prototypical labelled objects are near-identical polymer beads chemically modified with a fluorescent logic tag.22–27 In practice, the objects could also be proteins or cells,28 or valuable documents such as passports and banknotes.29
Up to now the logic functions explicitly emulated on a polymer bead with a fluorescence output entail anthracene-based H+-driven PASS 1 and YES,21 Na+, H+-driven AND21 and H+-driven ternary off–on–off;22 pyrene-based Na+, K+-driven OR;23 4-amino-1,8-naphthalimide-based H+-driven PASS 1, YES and double-tagged PASS 1 and YES,24 and azaBODIPY (diazaborondipyrromethene)-based H+-driven PASS 1, YES26 and double-tagged 2:1, 1:1 and 1:2 multi-value logic tags.25 We have contributed 4-amino-1,8-naphthalimide PASS 1; Fe3+, H+-driven TRANSFER; and Fe3+, H+-driven AND logic gates with two distinguishable optical output channels responsive to acid–base and redox chemistry.27 More complex logic functions can be derived from integrating two or more logic gate types together. For example, off–on–off multi-valued logic is an integration of YES and NOT functions;30 INHIBIT logic is an integration of AND and NOT functions.31
In Fig. 1 we present 1,3,5-triaryl-2-pyrazoline logic gates 1–3 along with their design layouts. Compounds 1 and 2 are conceived on the premise of electron-donor–spacer–fluorophore32 and receptor–spacer–fluorophore33 formats with a photoinduced electron transfer (PET) switching mechanism. Intrinsic to the pyrazoline is the N2 nitrogen atom and an internal charge transfer (ICT) excited state, which is deactivated with high H+ on protonation34 (or Hg2+ on complexation).351–3 are substituted with ferrocene (electron donor) 1, N,N-dimethylaniline (receptor1) 2 or phenyl (devoid of a PET mechanism) 3, respectively, at the 5-position separated by a heterocyclic aliphatic bridge (CH2CH spacer) from the pyrazoline fluorophore. Hence we have engineered molecules with electron-donor–spacer–fluorophore–receptor,36receptor1–spacer–fluorophore–receptor37 and fluorophore–receptor formats. We demonstrate 1 is a Fe3+, H+-driven INHIBIT gate, 2 is a H+-driven off–on–off gate and 3 is a H+-driven NOT gate.
Fig. 1 The colour-coded modular constructs and molecular structures of the 1,3,5-triaryl-2-pyrazoline logic gates 1–3. |
Molecules 1–3 are strategically endowed with a carboxylic acid moiety at the para position of the pyrazoline 1-phenyl moiety for covalent immobilisation onto TentaGel® MB-NH2 polymer beads to give 4–7 by an amide coupling reaction (analogous to protein synthesis).6 The linker is a polyethyleneglycol (PEG) chain.21 The H+, Fe3+-driven polymer INHIBIT gate 4 has an electron-donor–spacer–fluorophore(–linker–bead)–receptor format (Fig. 2, top left). Solid tag 5 has a receptor1–spacer–fluorophore(–linker–bead)–receptor format (Fig. 2, bottom left). Polymer tag 6 has a simpler fluorophore(–linker–bead)–receptor format (Fig. 2, bottom right). Additionally, we include a H+, Fe3+-driven double-tagged polymer bead 7 labelled with INHIBIT gate 1 and off–on–off logic gate 2.
Fig. 2 The designs of the 1,3,5-triaryl-2-pyrazolines 1–3 covalently attached to Tentagel MB-NH2 tagged logic gates 4–6. |
Fig. 3 The synthesis of logic gates 1–3 and subsequent covalent attachment to give the polymer tagged beads 4–6. |
The UV-visible absorption spectra of 1–3 were measured in 1:1 (v/v) MeOH/H2O (Table 1). Under basic conditions, broad peaks appear at 367 nm, 356 nm and 368 nm for 1–3, respectively. The large molar extinction coefficients (logε ∼ 4.5) are confirmation of the strong π → π* transitions associated with the 2-pyrazoline chromophore. Isosbestic points at 325 nm and 396 nm are attributed to the ICT character of carboxypyrazolines and protonation of the imide and/or carboxy functionalities. Titration of 1–3 from 10−7 M to 1 M acid resulted in only slight changes in the UV–visible absorption spectra (Fig. 4).
Solvent | λ abs | logεc | λ em | pKad | FEHe | |
---|---|---|---|---|---|---|
a 10−6 M. b Units nm−1. c Units mol L−1 cm−1. d Titrations with 1 M CH3SO3H and 0.1 M NaOH solution and analysis with equation log[(Imax − I)/(I − Imin)] = pKa + logβH+. e Fluorescence enhancement (FE). Φf in 1:1 (v/v) MeOH/H2O are 1Φf = 0.02 (10−2 M H+, 120 μM Fe3+), 2Φf = 0.38 (10−2 M H+) and 3Φf = 0.17 versus anthracene in aerated ethanol (ΦF = 0.27) excited at 367 nm. Literature 3Φf = 0.19 A. Dorlars et al.47 f nd = not determined. | ||||||
1 | MeOH | 367 | 4.12 | 448 | 1.5 | 72 |
1 | MeOH/H2O | 367 | 4.53 | 448 | 1.7 | 28 |
1 | THF | 368 | 3.66 | 432 | ndf | 60 |
2 | MeOH/H2O | 356 | 4.57 | 451 | 0.7, 4.0 | 20 |
3 | MeOH/H2O | 368 | 4.51 | 470 | 0.7 | 5 |
The fluorescence spectra are broad mirror images of the S0 → S1 UV transition with λem at 448 nm, 451 nm and 470 nm in the on state for 1–3, respectively. Stokes shifts of ca. 80 nm eliminate the probability of an inner filter effect. In the presence of 10−2 M H+ and 70 μM Fe3+, 1 displays a 28-fold fluorescence enhancement (FE).36 In MeOH and THF, 1 has FEs of 72 and 60. At the same 10−2 M H+ level, 2 and 3 have more modest switching ratios of 20 and 5.
Binding constants for H+ and Fe3+ were determined by fluorimetric titrations according to the Henderson–Hasselbalch eqn (1)
log[(Imax − I)/(I − Imin)] = −log[M+] + logβM+ | (1) |
Fig. 5 illustrates a pictorial representation of the four logic states of 1 after excitation with light. In the absence of both inputs, PET from ferrocene to the excited state pyrazoline quenches the fluorescence (entry A). The PET reaction is strong enough to overcome the weak negative electrostatic charge of the carboxylate. However, in the presence of oxidant the ferrocene is oxidised to ferrocenium, which lowers the HOMO energy level of the electron donor. PET is no longer thermodynamically feasible and a blue fluorescence is observed from this charge neutral excited state (entry B). At 101 M H+ protonation occurs at the carboxylate and the N2 atom of the pyrazoline invoking both the ICT and PET quenching pathways (entry C). The positively charged fluorophore at the N2 atom contributes a positive electric field, which assists to further encourage PET. In the final case, the oxidised ferrocenium state, ICT is the dominant quenching pathway in acid (entry D). In summary, optimal brightness is only observed with high oxidant and low H+ (entry B).
Fig. 5 Pictorial representation of the truth table showing the four states of INHIBIT logic gate 1 and the deactivation pathways. The letter designations A-D correspond to the labels in Table 2. |
Although 1 has a high fluorescence enhancement of 28-fold in MeOH/H2O, the fluorescence quantum yield (Φf) is only 2% in the presence of 120 μM of Fe3+. Higher Fe3+ concentrations quench the fluorescence due to an inner filter effect, and possibly due to weak coordination at the N2 atom.34,35 To circumvent these issues, we tested ammonium persulfate (NH4)2S2O8 (E° = +2.1 V). It is a stronger oxidant than Fe3+ (E° = +0.77 V) and readily dissolves in water across the pH scale, as well as being transparent and colourless in the UV-visible region. It transfers two mole equivalents of electrons versus only one mole equivalent for Fe3+ and the product of the oxidation is sulfate, a relatively innocent anion.
The emission spectra and truth table for the INHIBIT logic function of 1 with APS as the oxidant are given in Fig. 7 and Table 2, respectively. Addition of 5.0 mM persulfate with no added H+ gave a 100-plus fluorescence enhancement with a bright quantum yield (Φf = 0.192). Fluorimetric titration of 1 in the presence of 4.0 mM APS between pH 0.85 and 10.0 in 1:1 (v/v) methanol/water yields a blue-shift from 470 nm to 450 nm. At high persulfate and low H+, fluorescence is observed, while high H+ in the presence of the oxidant disables most of the fluorescence. These observation are consistent with the attributes of an oxidant-enabled, H+-disabled INHIBIT logic gate.36
Label Fig. 5 | Input1b (H+) | Input2c (APS) | Output emissiond (ΦF) |
---|---|---|---|
a 10 μM 1 excited at 365 nm. b High input level 101 M H+ added as methanesulfonic acid. Low input level 10−6 M H+. c High input level 4.0 mM (NH4)2S2O8. Low input level with no (NH4)2S2O8 added. d Relative quantum yields measured with quinine sulfate in 0.1 M H2SO4 aerated water (ΦF = 0.55). Output level high when ΦF > 0.10. | |||
A | 0 (low) | 0 (low) | 0 (low, 0.001) |
B | 0 (low) | 1 (high) | 1 (low, 0.192) |
C | 1 (high) | 0 (low) | 0 (low, 0.001) |
D | 1 (high) | 1 (high) | 0 (low, 0.030) |
Logic gate 2 is a H+-driven off–on–off ternary logic gate as shown in Fig. 6 and summarised in Table 3. At 10−3 M H+, maximum fluorescence is observed with a Φf of 0.38 as a result of the PET quenching mechanism being arrested due to protonation of the N,N-dimethylaniline moiety (pKa = 4.0). At extreme high H+ concentration, protonation of the N2 atom of the heterocycle (pKa = 0.7) turns the fluorescence off by the ICT mechanism. The proximity of the two pKas provides an optimal ΔpKa of 3.3log units and a Gaussian-shaped pH-intensity profile.37 Protonation of the carboxylate to the carboxylic acid is also anticipated (pKa = 2.5) and enhances the electron-withdrawing character of the fluorophore (vide infra). Logic gate 3 with a phenyl at the 5-position is devoid of a PET mechanism. It is brightly fluorescent over most of the pH range with a Φf of 0.17 except at high acidic conditions (pKa = 0.7) with a minimum Φf of 0.034 near pH 0.
Label Fig. 6 | Inputb (H+) | Output emissionc (ΦF) |
---|---|---|
a 4 μM 1 excited at 357 nm. b H+ added as methanesulfonic acid. c Relative quantum yields measured with reference to anthracene in aerated water (ΦF = 0.27). Output level high when ΦF > 0.10. Data from ref. 37. | ||
A | 0 (low, 10−7 M) | 0 (low, 0.019) |
B | 1 (high, 10−3 M) | 1 (low, 0.38) |
C | 2 (low, 10−1 M) | 0 (low, 0.025) |
The thermodynamics for the PET driving forces are calculated using the Weller equation, eqn (2), based on electrochemical and photophysical data.11,36,37 The oxidation potentials (Eox) of ferrocene and N,N-dimethylaniline are identical (+0.45 eV vs. SCE) so the same PET driving forces are expected for 1 and 2. The reduction potential (Ered) and the excited state energy (Es) of 5-carboxyphenyl pyrazolines are not directly known. However, fortuitously the Hammett parameter σp for hydrogen and carboxylate are both 0.00.43 The Ered and Es values for unsubstituted 1-phenyl pyrazolines are −2.34 eV and 2.29 eV,11 respectively, and the coulombic term (e2/εr) contributes 0.1 eV. From eqn (2), ΔGPET = −0.10 eV, meaning PET for 1 and 2 from ferrocene or N,N-dimethylaniline to the excited carboxypyrazoline is readily feasible.36 The ground state ET reactions from Fe3+ and S2O82− to ferrocene are −0.32 eV and −1.65 eV, respectively.
ΔGPET = Eox − Ered − Es − e2/εr | (2) |
Despite the similar fluorescence quantum yields, they do differ to some degree in 1:1 (v/v) MeOH/H2O. The Φf of 1 is 0.192 and for 2 is 0.38. The difference is due to the type of chemical equilibria. Proton transfer to N,N-dimethylaniline forms a covalent bond, which ties up the electron lone pair to yield a stable cationic species. Electron transfer from oxidation of ferrocene by Fe3+ or S2O82− results in the ferrocenium radical cation and Fe2+or SO42−.
On irradiation of the beads 4–7 in the absence of inputs with 365 nm UV light, various shades of blue fluorescence are observed. In methanol, the fluorophore–receptor logic tag 6 emits a bright blue fluorescence, logic bead 5 has a weaker fluorescence, while 4 is not fluorescent due to intramolecular PET from ferrocene to the pyrazoline. The weak fluorescence of 5 is attributable to partial protonation of the dimethylaniline moiety in the semi-hydrophobic polymer interface.
The logic beads 4–7 were tested systematically in 1:1 (v/v) methanol/water at pH 1.4, 4.0 and 9.3. At pH ≤ 4.0, Fe3+ is stable and readily soluble in solution, but at pH 9.3 it forms insoluble hydroxide species and is ineffective as an input. The solid bead 4 (INHIBIT logic gate ‘Pourbaix sensor’)38–42 exhibits a low fluorescence unless the enabling oxidant input is present and the H+ level remains low as observed similarly with 1 (state B in Fig. 5). Very low fluorescence is observed at high acidic conditions due to ICT from the N2 pyrazoline atom and ferrocene quenching by PET (state C). In either case, the beads display relatively no fluorescence. Polymer beads 5 and 6 function as expected as H+-driven off–on–off and NOT logic gates (analogous to Fig. 6).
Fig. 6 Pictorial representation showing the three states of off–on–off ternary logic gate 2. The truth table data are provided as Table 3. |
Fig. 7 Emission spectra of INHIBIT logic gate 1. The numbering designations correspond to the input conditions given in Table 2. |
The attachment of molecules 1–3 onto the polymer bead converts the carboxylic acid moiety to an amide group within 4–7. Contrary to our past study where the point of attachment was isolated from the 4-amino-1,8-naphthalimide fluorophore by an alkyl spacer,27 attachment in this study is directly to the pyrazoline fluorophore, which contributes a synergistic inductive effect. The Hammett parameters σp for carboxylate (COO−), carboxylic acid (COOH), and amide (NHCOMe) are 0.00, 0.45 and 0.36 for 1, 1H+ and 4, respectively.43 Protonation of the carboxylate to the carboxylic acid, and coupling with the amino-terminated polymer beads to form an amide bond increases the σp value, and enhances the electron-withdrawing character of the pyrazoline. Thus, attachment of molecules 1–3 onto the polymer beads via the amino terminal PEG ligands lowers the pyrazoline LUMO energy level within 4–7 compared to the negatively charged carboxypyrazoline states of 1–3. Hence, PET from the ferrocene and N,N-dimethylaniline moieties should be even more thermodynamically feasible on the beads with ΔGPET < −0.10 eV for 4 and 5. This is an important feature as the lower polarity media of the polymer may retard PET and provide less stabilisation to the radical cation and anion intermediates.24
The non-polar microenvironment of the PEG chains at the polymer bead interface influences the excited state pKa* and the FE.24 In this past study with H+-driven anthracene and 4-amino-1,8-naphthalimide YES gate polymer beads, pKas* were measured to be 1.4 and 0.5log units less than the molecular models. The lower pKa* associated with the beads is due to a repulsive electric field effect generated from protonation of the untagged terminal amines on the polymer particles. In the same study, the FEs were found to be 64% and 48% lower for the anthracene and 4-amino-1,8-naphthalimide tagged beads than with the molecular versions in 1:1 (v/v) MeOH/water. Aprotic solvents tend to cause significant quenching to pyrazolines due to strengthening of the hydrogen bond between the N2 atom and protic solvent of the ICT excited state.44 Indeed, in MeOH and THF 1 has higher FEs than in MeOH/H2O (Table 1). It might be expected that the less polar microenvironment of the polymer beads contributes to greater emission brightness.45
Confocal fluorescence microscopy images of 4–7 were examined on a glass microscope slide in order to demonstrate the identity of individual beads within a mixed population set upon exposure to various inputs as reported by de Silva21,25 and us in our previous study with 4-amino-1,8-naphthalimides.27 Unfortunately, the shortest laser wavelength available was 457 nm, which is beyond the pyrazoline π–π* transition (see Table 1, Fig. 4 UV spectra). We attempted excitation at 457 nm, nonetheless, and observed green rather than vibrant blue emission. Given that at this longer wavelength the absorbance is weak, and that any transitions could be associated with forbidden n–π* transitions, we concluded our study.
Footnotes |
† “Molecular Engineering” is the title of an influential paper by A. R. von Hippel, Science, 1956, 123, 315–317. |
‡ LogP values were obtained from Chemdraw Ultra version 12.0.2.1076. |
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