Olivier
Aroule
a,
Mahmoud
Jarraya
b,
Emilie-Laure
Zins
*a and
Majdi
Hochlaf
*b
aMONARIS UMR 8233 CNRS, Sorbonne Université, 4 place Jussieu, 75252 Paris Cedex 5, France. E-mail: emilie-laure.zins@sorbonne-universite.fr
bUniversité Gustave Eiffel, COSYS/IMSE, 5 Bd Descartes 77454, Champs sur Marne, France. E-mail: majdi.hochlaf@univ-eiffel.fr
First published on 5th June 2024
Characterizing the microhydration of organic molecules is a crucial step in understanding many phenomena relevant to atmospheric, biological, and industrial applications. However, its precise experimental and theoretical description remains a challenge. For four organic solutes containing a CO bond, and included in the recent HyDRA challenge [T. L. Fischer, M. Bödecker, A. Zehnacker-Rentien, R. A. Mata and M. A. Suhm, Phys. Chem. Chem. Phys., 2022, 24, 11442–11454.], we performed a detailed study of different monohydrate isomers and their properties; these were cyclooctanone (CON), 1,3-dimethyl-2-imidazolidinon (DMI), methyl lactate (MLA), and 2,2,2-trifluoroacetophenone (TPH) molecules. As reported in the literature, the O–H elongation shift of the water molecule appears to be a good candidate for characterizing complexation-induced effects. We also show that CO elongation shift and UV-vis spectroscopy can be successfully used for these purposes. Besides, we present a comparative analysis of the strengths of non-covalent interactions within these monohydrated complexes based on interpretative tools of quantum chemistry, including topological analysis of electron density (ρ), topological analysis of electron pairing function, and analysis of the core-valence bifurcation index (CVBI), which exhibits a close linear dependency on ρ. Accordingly, a classification of intermolecular water–solute interactions is proposed.
The interactions between solute and solvent molecules are of weak nature, such as hydrogen bonds and van der Waals interactions. Such intermolecular interactions affect local electron density and, therefore, the reactivity of molecular species. For example, a network of hydrogen bonds with water molecules surrounding a reactant leads to electronic redistribution (and possibly proton transfer8) and therefore to a modification of the electrophilicity and nucleophilicity of reactant sites. Characterizing such water complexation-induced changes remains a major challenge in both theoretical chemistry and experiments. However, a better phenomenological description of these changes in reactivity seems to be essential for giving an accurate description of basic atmospheric, biochemical, and astrochemical processes. It is therefore mandatory to set a methodological approach based on both state-of-the-art experiments and theoretical investigation. This allows to characterize simple and representative reactions between two partners A and B, determine the structures of the main microhydrated isomers of A (A(H2O)n), and study the reactivity and describe the reaction products of A(H2O)n complexes with partner B. At first glance, the identification of monohydrated complexes can be a preliminary step for the study of several water molecules solvating a chemical compound. This was the background to the recently launched HyDRA challenge,17,18 the first computational challenge to describe the perturbation of the vibrational modes of the water molecule due to the formation of 1:1 water–solute complexes. The aim of such a challenge was to predict the redshifts of the symmetrical OH elongation of water within monohydrate complexes with respect to the isolated water molecule. Beyond the numerical accuracy of this red-shift, it is interesting to question whether the right value is obtained for the right reason, i.e., with a correct prediction of the interaction energy and geometry of the monohydrated complexes. Moreover, the microhydration of small organic compounds can lead to several isomers lying sufficiently close in energy that they can coexist even while embedded in cooled rare gas matrices or in molecular jets.19,20 Furthermore, in the case of studies applied to real environments (biological, atmospheric, or astrochemical), the most stable structures are not necessarily the only relevant ones, particularly in chemical reactivity. In contrast, within the HyDRA challenge, only the microhydration of the most stable conformer was assumed and could be observed in a molecular jet; whereas the possible influence of water on the properties of the other conformers was omitted, although this could be particularly relevant for future applications involving molecules of biochemical interest, such as sugars.
Among the CO bond-containing molecules included in the HyDRA challenge, the microhydration of some carbonyls has already been extensively studied in the literature. More specifically, the monohydration of acetone21,22 and formaldehyde23,24 has been widely investigated, and will not be discussed further. We should also mention the matrix isolation (FT)IR studies on the microhydration of atmospheric α-dicarbonyls by Mucha and Mielke,25 and of small CO-containing molecules by Khriachtchev.26 Further, Suhm and co-workers treated in detail 10 ketones (acetone, its deuterated isotopologues, and nine symmetrically and asymmetrically aliphatic and aromatic substituted derivatives) complexed with a unique water molecule, where they focused on the OH elongation shifts of water-induced complexation as probed by IR spectroscopy.27
In the present first-principles investigations, we extend some of the theoretical studies initiated by the HyDRA challenge,17,18 whereby we carried out a systematic study of the most stable monohydrated complexes of four organic solutes containing a CO bond and included in the HyDRA challenge. We chose carbonyls which have not yet, to the best of our knowledge, been the subject of extensive theoretical characterizations, namely the cyclooctanone (CON), 1,3-dimethyl-2-imidazolidinon (DMI), methyl lactate (MLA), and 2,2,2-trifluoroacetophenone (TPH) molecules (Scheme 1). Interestingly, CON can exist in a number of different conformers28 and here we considered the five most stable ones: CON_BC1, CON_TBC1, CON_BC2, CON_CR1, CON_TBC2 (Scheme 2). For those monohydrated complexes, we determined the preferred approach regions of the solute and the water molecule maximizing their mutual interactions, in particular between complementary sites. Afterwards, we performed full geometry optimizations followed by frequency calculations based on these “guess structures”, in order to determine the most stable water–solute clusters, their energies, and their associated vibrational frequencies. Then, we carried out QTAIM (quantum theory of atoms in molecules) and ELF (electron localization function) topological studies of the optimized complexes, in order to identify in-depth the non-covalent interactions responsible for such complex stabilization.
Scheme 2 Five low-energy CON conformers as reported in ref. 28. We have also given their relative energies (in kJ mol−1) with respect to the most stable one. |
For atoms description, the PBE0-D3 functional was used in conjunction with the aug-cc-pVTZ correlation-consistent triple-zeta basis set, as it was shown in the HyDRA challenge that this level of theory gives good results. A superfine grid was used for total geometry optimization. Each total optimization was terminated by a calculation of harmonic frequencies, and a scaling factor of 0.9604 was used to estimate the frequencies corrected for anharmonicity following an often-used procedure.36–40
Complexation energies, related to the S + H2O → (S–H2O) reaction between the solute (S) and water, were calculated from relaxed structures of S and H2O for each complex according to eqn (1):
Ecomplexation = E(S⋯H2O) − [ES − EH2O] | (1) |
For CON, the energy of the isomer involved in the (S–H2O) was chosen for the ES. In the case of MLA, the monohydration can lead to large deformations of the molecule. For that case, in addition to complexation energies, binding energies were also calculated.
Complexation energies included zero-point vibrational energy (ZPE) corrections. Basis set superposition error (BSSE) corrections were also calculated and are shown in Table S2 (ESI†). Since all the BSSEs were much smaller than the assumed error bars emanating from our level of calculations (BSSE < 1 kJ mol−1; error ≈ 5 kJ mol−1), these values were not included in complexation energies.
To further confirm the energy orders obtained, single point computations were carried out at the CCSD(T)-F12/aug-cc-pVDZ level on the optimized structures at the PBE0/aug-cc-pVTZ level of theory. We observed that all the interaction energies were calculated to be 5 kJ mol−1 higher in the single point calculations while using the explicitly correlated coupled cluster approach, compared with the energies calculated using PBE0-D3, but there was no major difference in the energy order. Structures were also further optimized at the ωB97-XD/aug-cc-pVTZ level. The latter computations showed that the energy order was the same as the one obtained using PBE0-D3. These results are presented in Table 1.
Complex | Complexation energy (in kJ mol−1) | Binding energy (PBE0-D3/aug-cc-pVDZ) | ν sym(O–H) | |||
---|---|---|---|---|---|---|
PBE0-D3/aug-cc-pVDZ | wB97-XD/aug-cc-pVDZ | CCSD(T)-F12/aug-cc-pVDZ | Calc. | Exp.18 | ||
TPH_1 | −17.9 | −14.5 | −23.9 | 3608.8 | 3611 | |
TPH_2 | −13.5 | −10.4 | −18.7 | 3645.3 | ||
TPH_3 | −10.9 | −8.5 | −15.3 | 3697.3 | ||
TPH_4 | −10.8 | −8.6 | −15.3 | 3697.2 | ||
TPH_5 | −8.9 | −6.8 | −12.8 | 3701.7 | ||
TPH_6 | −8.7 | −7.3 | −12.9 | 3693.1 | ||
TPH_7 | −8.6 | −6.1 | −12.7 | 3701.6 | ||
DMI_1 | −27.0 | −24.8 | −34.2 | 3467.7 | 3492 | |
DMI_2 | −27.0 | −24.8 | −34.2 | 3468.2 | ||
DMI_3 | −27.0 | −24.8 | −34.1 | 3472.4 | ||
DMI_4 | −19.2 | −17.9 | −28.0 | 3506.8 | ||
DMI_5 | −19.2 | −17.9 | −28.0 | 3506.6 | ||
CON_BC1_1 | −25.8 | −23.7 | −32.4 | 3471.0 | 3503 | |
CON_BC1_2 | −25.3 | −23.3 | −32.0 | 3493.9 | ||
CON_BC2_1 | −25.9 | −23.9 | −31.2 | 3473.4 | ||
CON_BC2_2 | −25.1 | −22.7 | −32.7 | 3500.0 | ||
CON_TBC2_1 | −25.4 | −23.0 | −32.5 | 3478.3 | ||
CON_TBC2_2 | −24.2 | −22.3 | −32.5 | 3490.4 | ||
CON_CR_1 | −25.8 | −23.4 | −32.7 | 3475.8 | ||
CON_CR_2 | −25.8 | −23.4 | −32.0 | 3475.4 | ||
CON_TBC1_1 | −26.1 | −22.1 | −32.2 | 3516.8 | ||
CON_TBC1_2 | −24.6 | −23.8 | −30.8 | 3469.1 | ||
MLA_1 | −26.6 | −24.7 | −36.0 | −47.23 | 3491.6 | 3524 |
MLA_2 | −23.6 | −21.1 | −32.3 | −49.91 | 3524.4 | |
MLA_3 | −21.2 | −18.7 | −29.6 | −41.39 | 3531.4 | |
MLA_4 | −19.5 | −17.8 | −26.9 | −27.92 | 3547.9 | |
MLA_5 | −19.5 | −17.9 | −26.4 | −27.62 | 3582.0 | |
MLA_6 | −19.3 | −17.5 | −27.1 | −27.68 | 3531.4 | |
MLA_Pi | −11.9 | Not stable | −19.2 | −11.89 | 3696.8 |
The ChemOffice suite of programs (Chem3D and ChemDraw, version 8.0) was used to draw the structures of the molecules and complexes.
(2) |
The electrostatic potential is then projected onto an iso-density surface with a value of 0.001 a.u., because this iso-density generally contains 95% of the system's charge and often represents the surface of the molecule.50 Here, these MESP surfaces were obtained using the AIMALL package from wfn files, wavefunction files generated by GAUSSIAN 16. MESP analysis enables electrophilic and nucleophilic sites to be localized and interactions between complementary sites to be maximized for the construction of initial structures.51
Fig. 1 Identification of electrophilic (left) and nucleophilic (right) sites of the isolated molecules under investigation. |
For MLA, two electrophilic sites were identified with a value of 0.04 a.u. The first involved the hydrogen of the alcohol function, the second also involved a hydrogen atom but it was that of the methoxy group. A third electrophilic site was found perpendicular to the mid-plane of the molecule, and in the plane of the CO double bond, just above and below the carbon atom. In the literature, this type of electrophilic site is known as a π-hole.59 Through analysis of the Laplacian of the electron density in two perpendicular planes, the possible directions of approach of a water molecule to this site were predicted (Fig. 2). For CON, we also identified two electrophilic sites with a value of 0.03 a.u. The first one was located on the hydrogen attached to the carbon opposite to the CO bond, and the second corresponded to the hydrogen next to the aforementioned one. Similarly, we found two electrophilic sites for DMI with MESP values of 0.03 a.u. that involve the hydrogen atoms located on the carbon atoms opposite to the oxygen atom. A third electrophilic site was located in the middle of the C–C bond opposite to the oxygen atom with the same value of MESP. Besides, Fig. 1 shows that TPH possesses six electrophilic sites. The most electrophilic ones are located on the aromatic hydrogens located at the meta and para positions with respect to the OCCF3 group with a value of 0.04 a.u. Another one with the same value of MESP is located on the ortho position close to the CCF3 group. The other hydrogen on the other ortho position is less electrophilic. The sixth electrophilic site is located on the carbon of the CO bond with a value of 0.03 a.u.
Fig. 3 Structures of the most stable monohydrated TPH, MLA, DMI and CON complexes obtained after geometry optimization. We give also their name used throughout the manuscript. Refer to Schemes 1 and 2 for the molecular structures of these carbonyls and Table 1 for their interaction energies. Table S1 lists their Cartesian coordinates (ESI†). |
For TPH interacting with water, we show the 7 most stable clusters. The most stable one (TPH_1) was obtained through the establishment of an H bond between the oxygen of the carbonyl function and H of a water molecule. A further stabilization was due to a H bond between the O of water and CH aromatic in the ortho position of the aliphatic chain. The second most stable cluster (TPH_2) was also stabilized by an H bond between H of water and O of TPH, whereas it lacked the second stabilizing H bond found in TPH_1. For the other clusters, they corresponded to van der Waals interactions between TPH and water. In particular, TPH_6 was further stabilized by an OH–π interaction. The latter is of particular relevance for the stabilization of water-nucleobases in functional RNAs.14 For MLA, the three most stable clusters contained two H bonds involving one water H atom and the CO and OH bonds of MLA, thus forming a cycle. This resulted in relatively large, in absolute values, interaction energies (>20 kJ mol−1) for such complexes. For the four less stable others, a unique H bond was responsible for their formation, where water interacts with the Pi hole of MLA in the 7th one. For the DMI–water complexes, the H bond between the H of water and O of CO led to DMI_1, DMI_2, and DMI_3, whereas the one involving the N of DMI led to the less strong DMI_4 and DMI_5 species. For CON monohydrates, the situation was rather complicated, as explained in the Introduction, because of the existence of conformers. Anyway, the CON–water clusters were stabilized by a H bond established between the H of water and O of CO. Further stabilizations of some of them were due to van der Waals interactions between water and the C–H of the carbon chain. Noteworthily, the ordering in energy of the CON conformer–water clusters did not follow the ordering of the respective conformers (Scheme 2) due to solvation-induced effects (vide infra).
In the HyDRA challenge, the complexation-induced red-shift associated with νsym(O–H) was used to assess the reliability of the calculations or predictions in relation to the experimental data. Implicitly, this red-shift was considered to be a representative descriptor of the structure of the calculated microhydrated complexes. For rationalization, we plotted in Fig. 4 the variation of the interaction energies of the microhydrated complexes as a function of the red-shift associated with νsym(O–H). This figure shows that the chosen red-shift is a good indicator of the stability of microhydrated complexes. Thus, the region around 3400 cm−1 seemed fairly suitable for characterizing these monohydrated complexes. However, these bands are often broad, and therefore their non-equivoque assignment could be tricky. Moreover, the presence of free water molecules, water aggregates, and/or different monohydrate isomers can further complicate the precise attribution of the bands in this spectral region. Consequently, it is worth searching for other spectral regions that could be better suited for those purposes. Obviously, we investigated the possible choice of the CO band of carbonyls and its shifts during microhydration. For such organic compounds, this is fairly natural, as the 1550–2850 cm−1 region is not particularly congested and the CO bands appear as fine and intense peaks. Fig. 4 shows that this choice was indeed quite adequate: although the complexation-induced shifts in the CO elongation did not present a linear dependency upon the computed interaction energies, the shifts appeared to be fairly unambiguous and representative of the structures of the complexes formed. They could therefore be used as descriptors to confirm the tentative assignment done on the basis of the OH elongation shifts of the water molecule. Thus, such shifts would make it possible, in addition to the study of the OH elongation frequencies of carbonyl–water complexes, to confirm the assignments of the monohydrated isomeric geometries, and possibly to identify the simultaneous presence of several isomers. Experimentally, the CO stretching, in addition to the OH stretching, was used recently by Vaida and co-workers to distinguish between gas phase pyruvic acidic isomers either isolated or H bonded to water molecules, thus confirming the efficiency of such a procedure.60 Nevertheless, these authors showed that probing the CO band experimentally by IR spectroscopy requires an experimental setup dedicated to monohydrates and equipped with suitable laser diodes, which is not necessarily easy to implement. Alternatively, any experimental technique, not based on IR spectroscopy, which would enable determining the structure of such monohydrated isomers, in conjunction with theoretical calculations, would be highly appreciated. For those purposes, high-resolution UV-vis spectroscopy was suggested. It has been proven that this technique is also very efficient at treating the bonding between organic compounds and water molecules.58,61 We therefore calculated the pattern of the first singlet and triplet electronic excited states of TPH, MLA DMI, CON and their monohydrates in order to determine whether the HOMO–LUMO transitions of isolated molecules would be significantly shifted and therefore experimentally measurable. These computations were performed at the TD-DFT PBE0/6-311++G(d,p) level for the most stable monohydrate isomers and the results are given fully in Tables S3 and S4 of the ESI.†
For illustration, Table 2 shows the S0 → S1 and S0 → T1 vertical transition wavelengths of the most stable complexes of TPH, MLA, DMI, and CON with a water molecule. This table gives also the complexation-induced shifts corresponding to the wavelength difference between that of the complex and the corresponding one in the isolated carbonyl, being lower in energy as those of water (which are lying at shorter wavelengths, i.e., out of the range of the investigated transitions). Indeed, Tables S3 and S4 (ESI†) reveal that the S0 → Sn and S0 → Tn (n = 1–5) correspond to the promotion of one electron from the highest occupied molecular orbitals (MOs) of the organic compound to its lowest unoccupied MOs since they are mostly located on this compound rather than on water (cf. Fig. S1, ESI†).
Complex | λ S0→S1 | ΔλS0→S1 | λ S0→ T1 | ΔλS0→T1 |
---|---|---|---|---|
TPH_1 | 310.0 | −9.2 | 363.37 | −31.29 |
TPH_2 | 310.9 | −8.3 | 400.8 | 6.14 |
MLA_1 | 211.9 | 10.0 | 234.44 | 10.79 |
MLA_2 | 211.7 | 9.7 | 234.28 | 10.63 |
DMI_1 | 221.0 | −3.9 | 225.27 | −4.02 |
DMI_2 | 221.0 | −3.9 | 225.28 | −4.01 |
CON_BC1_1 | 279.2 | −9.9 | 322.37 | −15.53 |
CON_BC1_2 | 280.9 | −8.1 | 324.77 | −13.13 |
CON_TBC1_1 | 281.3 | −10.2 | 324.6 | −16.02 |
CON_TBC1_2 | 284.9 | −6.6 | 329.73 | −10.89 |
CON_CR_1 | 283.5 | −9.9 | 327.22 | −15.51 |
CON_CR_2 | 283.5 | −9.9 | 327.22 | −15.51 |
CON_BC2_1 | 284.2 | −10.0 | 329.94 | −16.02 |
CON_BC2_2 | 286.1 | −8.1 | 332.45 | −13.51 |
CON_TBC2_1 | 282.0 | −10.0 | 327.43 | −16.05 |
CON_TBC2_2 | 283.0 | −9.0 | 328.69 | −14.79 |
As expected for carbonyl compounds, Table 2 and Table S3 (ESI†) shows that the S0 → S1 transitions of the carbonyls under investigation occurred for λS0 → S1 in the 290–320 nm range, except for DMI, for which this transition took place at ∼200 nm, as for esters. These transitions were red-shifted upon attaching a water molecule to these organics. Such shifts amounted to ∼10 nm for the S0 → S1 transition and even larger (∼30 nm) for the S0 → T1 transitions. Such shifts are quite large and can be used to probe the monohydration of these carbonyls, in addition to the IR spectroscopy discussed above. Interestingly, Fig. S1 (ESI†) shows that the orbitals of the water molecule were also directly involved during these transitions. Again, our findings suggest that UV-vis spectroscopy is a powerful tool to probe the subtle effects associated with the microhydration of organic compounds as done recently for the atmospheric relevant hydration of methylglyoxal.59 Besides, we suggest investigating the S0 → T1 transitions, although of weak intensities, since they present large band shifts from bare molecules while interacting with a water molecule.
Alternatively, more information about the strength of the hydrogen bond can be obtained after examining the core-valence bifurcation index (CVBI).62–64 This index is based on a topological value as given in eqn (3):
ϑ(AHB) = η(rcv) − η(rAHB) | (3) |
Then, we must look at the sign of CVBI: if it is positive, the hydrogen bond associated with the CVB index is weak. Else, the hydrogen bond is strong. For illustration, the variation of the ELF value along the A–H–B bond path is shown in Fig. 6 for the most stable conformer of the monohydrated DMI molecule. In this case, the CVB index was −0.02, which means that the hydrogen bond was strong.
All non-covalent interactions in the monohydrated complexes herein considered were classified with the help of CVBI and the electron density at the intermolecular BCP to gain a better understanding of the strength of the hydrogen bond (cf.Fig. 7). The strongest bonds corresponded to those characterized by the highest ρ(BCP) values and negative CVBI values. Obviously, the isomers in which the water molecule acted as a hydrogen bond donor (to the CO bond of the solutes) were stronger than those in which the water molecule acted as a hydrogen bond acceptor. We also noted that systems in which water plays the role of both hydrogen bond acceptor and donor with the OH and CO functions, in the case of MLA, were characterized by a significant relative stability.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4cp01035c |
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