Christine
Brotschi
*,
Martin H.
Bolli
*,
John
Gatfield
,
Catherine
Roch
,
Thierry
Sifferlen
,
Alexander
Treiber
,
Jodi T.
Williams
and
Christoph
Boss
Idorsia Pharmaceuticals Ltd, Drug Discovery and Preclinical Development, Hegenheimermattweg 91, 4123 Allschwil, Basel-Landschaft, Switzerland
First published on 24th November 2023
Selective orexin 2 receptor antagonists (2-SORA) such as seltorexant (15) are in clinical development for the treatment of insomnia and other conditions such as depression. Herein, we report our structure–activity–relationship (SAR) optimization efforts starting from an HTS hit (1) (N-(1-((5-acetylfuran-2-yl)methyl)-1H-pyrazol-4-yl)-5-(m-tolyl)oxazole-4-carboxamide) that was derived from an unrelated in-house GPCR-agonist program. Medicinal chemistry efforts focused on the optimization of orexin 2 receptor (OX2R) antagonistic activity, stability in liver microsomes, time dependent CYP3A4 inhibition, and aqueous solubility. Compounds were assessed for their brain-penetrating potential in in vivo experiments to select the most promising compounds for our in vivo sleep model. Our lead optimization efforts led to the discovery of the potent, brain penetrating and orally active, 2-SORA (N-(1-(2-(5-methoxy-1H-pyrrolo[3,2-b]pyridin-3-yl)ethyl)-1H-pyrazol-4-yl)-5-(m-tolyl)oxazole-4-carboxamide) 43 with efficacy in a sleep model in rats comparable to 15.
Decades of dedicated research efforts focused on the orexin system11,12 and the three dual orexin receptor antagonists (DORA) suvorexant 2,13–17 lemborexant 3 (ref. 18–20) and daridorexant 4 (ref. 21 and 22) recently gained marketing approval for the treatment of insomnia (Fig. 1).
While DORAs antagonize both receptors with similar affinity, selective OXR antagonists (SORA) may either selectively antagonize OX1R (1-SORA) or OX2R (2-SORA). Several 1-SORAs have been explored for the treatment of addiction, stress, anxiety, panic, and eating disorder. One example, nivasorexant,23,24 was investigated for the treatment of binge eating but proved ineffective.25 More intense research on 2-SORAs was triggered by the disclosure that comparable to DORAs also the 2-SORA TCS-OX2-29 5 caused a reduction in latency to sleep onset and an increase in total sleep time26,27 and since then, various 2-SORAs have been evaluated in preclinical and clinical studies for the treatment of insomnia or depression.
Notable 2-SORA compounds include spiro-piperidine 6,28 LSN2424100 7,29 EMPA 8,30 MK-1064 9,31,32 MK-3697 10,33 piperidine 11,34 MK-8133 12,35 diazepam 13,36 and JNJ-10397049 14 (ref. 37 and 38) (Fig. 2). The debate whether selective antagonism of OX2R alone is sufficient to promote sleep in humans persisted until the results of 9 were published.39 This 2-SORA promoted sleep in mouse, dog, and human with efficacies similar to DORAs. The 2-SORA seltorexant (MIN-202, JNJ42847922) 15 (ref. 40 and 41) initially developed and found to be efficacious in insomnia disorders is currently investigated in major depressive disorders in phase 3 clinical studies.42 Other recently introduced 2-SORA compounds include SDM-878 16 (ref. 43) and JNJ-48816274.44 The structure of the latter compound has not been disclosed.
Fig. 2 2-SORAs investigated in research, preclinical, and clinical development. Potency data as published in the literature (see references in the text). |
Compounds were found to be substantially less stable in rat liver microsomes (RLM) when compared to HLM. Rat experiments were therefore performed at a high dose (100 mg kg−1) attempting to saturate metabolism and thus achieve exposures suitable for pharmacodynamic evaluation. Furthermore, CYP450 inhibition, including time-dependent inhibition (TDI) of CYP3A4 was monitored to reduce the risk of potential drug–drug interactions. Aqueous solubility was assessed to further guide compound prioritization. Pharmacokinetic experiments of key analogs helped us shortlist compounds with oral bioavailability. Brain penetration properties were assessed in in vivo experiments to then select the most promising compounds for our in vivo sleep model. These efforts eventually led to the identification of pyrazole 43, which is structurally distinct from known 2-SORAs. Pyrazole 43 was found to be a potent, orally bioavailable, brain penetrating 2-SORA with efficacy in a sleep model in rats comparable to 15.
For SAR optimization purposes, the hit structure was dissected into three parts, namely part A, B, and C (Fig. 4).
We started our SAR investigation with part A by keeping part B (4-aminopyrazole) and part C (biaryl-carboxamide) of the HTS hit 1 constant. The unsubstituted benzyl (17), the unsubstituted phenethyl (18), or the phenoxy ether analog 19 were equally potent on both orexin receptors (OXRs) and showed affinities comparable to compound 1 (Table 1).
2-Pyridyls 20 and 21 were also tolerated by both receptors. Compound 21 showed a slight increase on OX2R potency. Heteroaryls, such as benzoxazole (22), quinoxaline (23) and quinazoline (24) were tolerated by both receptors but did not show improved potency. Interestingly, pyrimidine analog 25 was found to be OX2R selective with a potency of 34 nM and 1567 nM on OX2R and OX1R, respectively.
The promising potency profile of compound 25 prompted us to investigate the influence of the linking atom X (Table 2). Potency was not altered when the oxygen in 25 was replaced by nitrogen (26). The C-analog 27 was slightly less potent on OX2R and only about 10-fold selective over OX1R. By comparing the intrinsic clearance in liver microsomes, we found the N- and C-analogs 26 and 27, to be slightly more stable in HLM and RLM than the O-analog 25. Inhibitory activity towards CYP3A4 were 48 μM, 17 μM, and >50 μM for 25, 26 and 27, respectively. However, a potential for drug–drug interaction was detected by measuring time-dependent inhibition (TDI) of CYP3A4. After prolonged incubation (30 min), IC50-values decreased by >10-, 6.4- and 6.6-fold (“shift”) for compounds 25, 26 and 27, respectively.
X | O | N | C | |
---|---|---|---|---|
a IC50 values in nM; data are the geometric mean of at least three independent measurements determined by FLIPR assay (see ESI† for details). b Intrinsic clearance [μL min−1 mg−1] with human liver microsomes (HLM) and rat liver microsomes (RLM), at 1 μM. c IC50-value of cytochrome 3A4 inhibition in μM. d Time-dependent inhibition on CYP3A4, values are the observed shift of inhibition before and after pre-incubation (30 min). e Solubility [μg mL−1] as measured in, Fasted State Simulated Intestinal Fluid (FaSSIF) at pH 6.8, and Fed State Simulated Intestinal Fluid (FaSSIF) at pH 5. | ||||
Compd | 25 | 26 | 27 | |
OX2Ra | 34 | 29 | 61 | |
OX1Ra | 1567 | 1477 | 729 | |
HLM/RLMb | 294/>1250 | 141/860 | 155/882 | |
CYP3A4c | 48 | 17 | >50 | |
CYP3A4 shiftd | >10 | 6.4 | 6.6 | |
Solubilitye | 12/59 | 11/103 | 62/266 | |
FaSSIF/FeSSIF |
Aqueous solubility was low for 25 and 26, and slightly improved for 27. We found that the N-analog 26 had the best overall profile and therefore we kept the N-pyrimidine for the next round of optimization constant and focused our SAR investigation on part B by replacing the 4-aminopyrazole by a 4-amino-imidazole moiety (28). Unfortunately, potency of 28 was reduced when compared to 26 (Table 3) and the CYP3A4 shift was increased.
a IC50 values in nM; data are the geometric mean of at least three independent experiments and were determined by FLIPR assay (see the ESI† for details). b Intrinsic clearance [μL min−1 mg−1] with human and rat liver microsomes, at 1 μM. c Time-dependent inhibition on CYP3A4, values are the observed shift of inhibition before and after pre-incubation. | |||
---|---|---|---|
Compd | 26 | 28 | 29 |
OX2Ra | 29 | 106 | 4 |
OX1Ra | 1477 | >3883 | 22 |
HLM/RLMb | 141/860 | 191/>1250 | 1161/>1250 |
CYP3A4 shiftc | 6.4 | >9.1 | 2.0 |
Omitting the pyrazole moiety (part B) and modifying the biaryl carboxamide (part A) led to compound 29 which had a markedly improved potency, but a clearly reduced OX2R selectivity when compared to 26. The reduced shift in the TDI of CYP3A4 (shift of 2) was encouraging. However, as one could expect from the higher intrinsic clearance in RLM (Clint > 1250 vs. 860 μL min−1 mg−1) also the in vivo clearance in rats was higher for 29 than for 26 (Table 4). In the corresponding oral rat PK experiment, plasma exposure of 29 (cmax and AUC) was much lower than for pyrazole 26 and compound 29 showed a clearly lower bioavailability (1%) than pyrazole 26 (14%) indicating that omitting the pyrazole had a negative impact on pharmacokinetic properties. Along these lines, a poor pharmacokinetic profile of a series of DORAs containing a diamino-ethyl linker due to extensive oxidative metabolism was reported by Merck.46
iva | pob | ||||||||
---|---|---|---|---|---|---|---|---|---|
Compd | Dose [mg kg−1] | CL [mL min−1 kg−1] | Vss [L kg−1] | T 1/2 [h] | Dose [mg kg−1] | AUC0–∞ [ng h mL−1] | C max [ng mL−1] | T max [h] | F [%] |
a iv = intravenous, formulation: HPbCD 30%/H2O/5% DMSO. b Oral, as a suspension in 5% DMSO, 95% aq. gelatine (7.5%). | |||||||||
26 | 1.0 | 40 | 1.4 | 0.6 | 10 | 588 | 242 | 0.5 | 14 |
29 | 1.0 | 53 | 6 | 4.3 | 10 | 25 | 8.14 | 0.5 | 1 |
In a permeability assay using human MDR1-overexpressing MDCK1 cells, both compounds showed high permeability in vitro in both directions (26: Papp AB = 34.3, Papp BA = 43.9; 29: Papp AB = 35.3, Papp BA = 47.6 [10−6 cm s−1]) and hence an efflux ratio of close to 1 indicating that none of compounds is a substrate of MDR1. However, low plasma exposure of 29 in the rat lead to low brain levels. In the corresponding PK experiment performed at 100 mg kg−1, the brain concentration 3 h after compound administration reached only 21 nmol g−1 for 29 while it was at 750 nmol g−1 for 26 (Table 8). These findings combined with the fact that compound 29 showed a nearly 10-fold higher intrinsic clearance in HLM made this sub-series clearly less attractive for further SAR studies.
Next, we revisited part A and replaced the amino-pyrimidine unit by a N-linked indole. Various substitution patterns were analyzed for their impact on potency, metabolic stability, and TDI of CYP3A4 (Table 5).
R | |||||
---|---|---|---|---|---|
a IC50 values in nM; data are the geometric mean of at least three independent experiments and were determined by FLIPR assay (see the ESI† for details). b Intrinsic metabolic clearance [μL min−1 mg−1] in human liver microsomes, at 1 μM. c Time-dependent inhibition of CYP3A4, values are the observed shift of the IC50-value before and after pre-incubation (30 min). nd = not determined. | |||||
Compd | 35 | 36 | 37 | 38 | 39 |
OX2Ra | 42 | 16 | 390 | 6 | 50 |
OX1Ra | 179 | 675 | 1355 | 879 | 1253 |
HLMb | 350 | 266 | nd | 284 | 404 |
CYP3A4 shiftc | 25 | 9.6 | nd | 9.2 | 3.3 |
Unsubstituted indole 30 showed an OX2R potency of 103 nM and a weaker OX1R affinity of 497 nM. A 5-methoxy substituent (32) was not well tolerated by both OXR, however a 6-methoxy substituent (33) increased potency solely on OX2R to 7 nM, resulting in a OX2R selective compound. Adding a second methoxy substituent at the 5-position (35) led to a slight decrease in OX2R potency and an increase in OX1R potency, resulting in a rather dual compound when compared to 33. In contrast, when a second methoxy group was added at the 4-position (36), no major differences in OXR affinities were observed when compared to 33. The 7-azaindole (37) was slightly less potent when compared to indole 30. However, the addition of a 6-methoxy group (38) to the 7-azaindole resulted in a single digit nanomolar compound on OX2R, with similar potencies as observed for indole 33. Moving the nitrogen to position 5 (39) resulted in a decrease in OX2R affinity. Benzimidazole 31 was as potent on OX2R, but ∼2-fold less potent on OX1R when compared to its indole analog 30. On the other hand, the affinity profiles of indole 33 and benzimidazole 34 were rather similar. The intrinsic clearance in HLM of indoles and benzimidazoles were in the range of 200–400 μL min−1 mg−1, with little impact of the substitution pattern on in vitro stability (30vs.32 or 33vs.34). Interestingly, the two benzimidazoles 31 and 34 showed a clearly reduced TDI on CYP3A4 when compared to their indole analogs 30 and 33, respectively. While compound 31 was not potent enough, the IC50-value of 12 nM on OX2R for compound 34 made this an interesting compound for further investigation (see below).
Next, we turned our attention to C-3-linked indoles and 4-aza-indoles (Table 6). The C-linked indole 40 was clearly less potent on OX2R when compared to its N-linked indole analog 32. In line with observations made with compounds 32 and 33 (Table 5), moving the methoxy group to the 5-position (41) resulted in a highly potent (2 nM) and selective 2-SORA.
R | ||||
---|---|---|---|---|
a IC50 values in nM; data are the geometric mean of at least three independent experiments and were determined by FLIPR assay (see the ESI† for details). b Intrinsic metabolic clearance [μL min−1 mg−1] with human microsomes (HLM) and rat liver microsomes (RLM), at 1 μM. c Time-dependent inhibition on CYP3A4, values are the observed shift of inhibition before and after pre-incubation. d Solubility [μg mL−1] as measured in Fasted State Simulated Intestinal Fluid (FaSSIF) at pH 6.8, and Fed State Simulated Intestinal Fluid (FaSSIF) at pH 5. nd = not determined. | ||||
Compd | 40 | 41 | 42 | 43 |
OX2Ra | 1487 | 2 | 32 | 12 |
OX1Ra | 1880 | 393 | 2051 | 619 |
HLM/RLMb | nd | 46/298 | 153/566 | 92/366 |
CYP3A4 shiftc | 8.8 | 6.9 | 12 | 6.7 |
Solubilityd | nd | 33/167 | nd | 34/393 |
FaSSIF/FeSSIF |
Methylation of the N-indole (42) decreased the compound's potency on both OXRs. Compared to indole 41, 4-azaindole (43) was less potent on OX2R, resulting in a less selective compound towards OX2R. The intrinsic clearance for 41 and 43, in HLM was 46 and 92 μL min−1 mg−1, respectively. While the 3-linked indoles 41 and 43 showed lower shifts in the TDI of CYP3A4 than their N-linked analogs 33 and 38, respectively, IC50-values for CYP3A4 inhibition still markedly decreased with prolonged incubation time.
Compounds 41 and 43 have a similar aqueous solubility profile, with reasonable solubility in FaSSIF and FeSSIF.
After optimizing part A and part B, we explored the SAR of part C (Table 7). Small variations of the 5-phenyl-oxazole-4-carboxamide such as in compounds 44, 46, or 47 had little impact on potency and microsomal stability. However, a 2-methyl-substituent on the oxazole ring (45) was not well tolerated by the OX2R. 2-Triazolyl-phenyl-carboxamides as in 48 or 49, which are often found in DORA's (e.g.2, 4) and in 2-SORA compounds (11, 13, and 15) were not tolerated by either of the two OXRs. Interestingly, such carboxamides in combination with an “inverted” pyrazole-linker in the part B, resulted in potent DORAs.47 Unfortunately, none of the modifications in part C led to improved CYP3A4 shift values.
R | |||||||
---|---|---|---|---|---|---|---|
a IC50 values in nM; data are the geometric mean of at least three independent experiments and were determined by FLIPR assay (see the ESI† for details). b Intrinsic metabolic clearance [μL min−1 mg−1] with human microsomes (HLM) and rat liver microsomes (RLM), at 1 μM. c Time-dependent inhibition on CYP3A4, values are the observed shift of inhibition before and after pre-incubation. nd = not determined. | |||||||
Compd | 41 | 44 | 45 | 46 | 47 | 48 | 49 |
OX2Ra | 2.1 | 2.4 | 1772 | 4.3 | 4.9 | 4631 | >6820 |
OX1Ra | 393 | 835 | 1033 | 719 | 1027 | >7289 | >4458 |
HLMb | 46 | 55 | nd | 59 | 97 | nd | nd |
CYP3A4 shiftc | 4.2 | 5.1 | nd | 7.9 | 8.7 | nd | nd |
Based on the above compound characterization and SAR studies, pyrimidine 26, benzimidazole 34, and the two indoles 41 and 43 appeared interesting candidates for further profiling. Permeability data measured in the MDR1-MDCK1 assay indicated that none of the compounds 26, 41 and 43 is a substrate of the P-gp efflux pump (Table 8). The brain penetration potential of 26, 34, 41, 43 was then assessed in the Wistar rat. Plasma and brain concentrations were measured 3 h after oral administration of 100 mg kg−1 of the compound and results are reported in Table 8.
Compd | OX2Ra | OX1Ra | HLMb | [P]c | [B]c | [B/P]d | MDR1 effluxe |
---|---|---|---|---|---|---|---|
a IC50 values in nM; data are the geometric mean of at least three independent experiments and were determined by FLIPR assay (see the ESI† for details). b Intrinsic metabolic clearance [μL min−1 mg−1] with human microsomes (HLM) at 1 μM. c Brain penetration experiment was performed in rats (n = 3) by sampling plasma (P) and brain (B), 3 h following administration of 100 mg kg−1 p.o.; [P] in ng mL−1, [B] in ng g−1. d Brain/plasma ratios were calculated assuming a brain density around 1 g mL−1. e Multidrug resistant protein 1 (MDR1) efflux ratio (Papp (B-A)/Papp (A-B)). nd = not determined. | |||||||
26 | 29 | 1477 | 141 | 156 | 335 | 2.2 | 1.3 |
29 | 4 | 22 | 1161 | 46 | 10 | 0.2 | 1.3 |
34 | 12 | 733 | 419 | 368 | 21 | 0.06 | nd |
41 | 2.0 | 449 | 46 | 1859 | 3372 | 1.8 | 1.2 |
43 | 9.5 | 713 | 92 | 5053 | 5213 | 1.0 | 2.7 |
15 | 2.5 | 530 | 95 | 3465 | 1286 | 0.37 | 10.4 |
Of the four compounds tested, compound 26 showed the lowest plasma concentrations and, despite the good brain penetration indicated by a [B/P] ratio of 2.2, was not further characterized in vivo. Also compound 34 reached low plasma concentrations and even lower brain concentrations. The low brain to plasma ratio of 0.06 hinted that 34 is a likely substrate of the rat P-gp. Whether this is the case for the human transporter was not evaluated. Compared to 26 and 34, indole analog 41 and aza-indole 43 showed clearly higher plasma and brain concentrations, with total brain concentrations corresponding to 7.6 and 11.8 μM, respectively. The brain to plasma ratio of 1.8 and 1.0 indicated that compounds 41 and 43 are not rat P-gp substrates, correlating with the efflux ratios of 1.2 and 2.7 measured in the in vitro assay containing the human MDR1 transporter protein. The efflux ratio of 10 indicated that compound 15 is a substrate of the human MDR1 transporter. In the rat, the total brain concentration of compound 15 was equivalent to 3.2 μM and was 2.4- and 3.7-fold lower than that of compound 41 and 43, respectively.
For compound 41 and 43 the selectivity profile was assessed in a curve-shift FLIPR experiment. Compound 41 showed an OX2 selectivity profile of 388-fold over OX1R (Kb hOX1/hOX2) with Kb (hOX1) of 504 nM and Kb (hOX2) of 1.3 nM. Similarly, compound 43 was shown to be an OX2 selective compound with a selectivity ratio of 311-fold with Kb (hOX1) of 1744 nM and Kb (hOX2) of 5.6 nM.
Next, 41, and 43 were tested in vivo for their effect on the sleep/wake stages in freely moving male Wistar rats implanted with radiotelemetry transmitters for continuous recording of electroencephalographic/electromyographic (EEG/EMG) signals. In addition, 15 (ref. 40 and 41) was tested under the same experimental conditions as a reference compound. All three compounds were tested at 100 mg kg−1 and were administered orally at the beginning of the night active phase. Results are shown in Fig. 5.
Over the 6 h night (active) period following administration, 15 decreased significantly the time spent in active wake by 54 min compared to vehicle treated rats (p = 0.0002, paired t-test). However, time spent in quiet wake was increased by 17 min (p = 0.0454, paired t-test). In parallel to the overall decrease in wakefulness, 15 increased significantly both the time spent in rapid eye movement (REM) sleep and non-REM sleep by 7 min and 30 min, respectively, compared to matched-vehicle treated rats (p = 0.0118 and p = 0.0011, respectively, paired t-test). As observed previously with dual orexin receptor antagonists, the relative proportion of time spent in non-REM and REM sleep over the total sleep time stayed the same. Animals treated with 15 spent 82% of their sleeping time in non-REM sleep which is very similar to the time spent in non-REM sleep for the vehicle treated rats (84%, p = 0.2672; paired t-test).
Under the same experimental conditions, compound 41 decreased the time spent awake over the 6 h period following oral administration to a lesser extent than 15. The decrease in active wake time was of 25 min and the increase in quiet wake time of 9 min (p = 0.0218 and p = 0.0327 respectively compared to matched vehicle treated rats, paired t-test). Due to an overall limited decrease of wakefulness, the increase of time spent in non-REM sleep and REM sleep was small (9 and 7 min respectively) and only reached statistical significance for REM sleep (p = 0.0422 compared to matched vehicle treated rats, paired t-test).
Compound 43 decreased significantly the time spent in active wake compared to vehicle treated rats (−46 min; p = 0.0083, paired t-test) but did not significantly impact the time spent in quiet wake (+6 min; p = 0.1982, paired t-test). Consequently, both the time spent in non-REM and REM sleep increased compared to vehicle treated rats (+31 and +9 min respectively). The increase reached statistical significance only for the non-REM sleep time (p = 0.0122 and p = 0.0590 for non-REM and REM sleep, respectively, paired t-test). Similar to what was observed with 15, the relative proportion of time spent in non-REM and REM sleep over the total sleep time stayed stable after 100 mg kg−1 of compound 43 (p = 0.6599, paired t-test) with 80 to 81% of the sleeping time in non-REM sleep.
Since the herein described optimized orexin receptor antagonists originated from an in house HTS campaign, it was important to rule out that the optimized compounds have agonistic activities on the initial target. Compounds 41 and 43 were measured and no agonistic activities could be detected (EC50 > 25 μM).
The synthesis of the compounds 1, and 17 to 49 are described in the ESI† or in patent WO2012110986A1.48 As a prototypical example, the synthesis of 43 is depicted in Scheme 1. Hydrazine 51 was synthesized from commercially available 6-methoxypyridin-3-amine 50, in acidic conditions and the presence of NaNO2 and SnCl4. Aza-indole 52 was formed in presence of sulfuric acid at elevated temperature from hydrazine 51 and commercially available 2-(3-chloropropyl)-1,3-dioxolane. Bromination under Appel conditions49 with CBr4 and PPh3 afforded intermediate 53, which reacted with 4-nitro-pyrazole in the presence of Cs2CO3 to nitro-pyrazole analog 54. Reduction of the nitro group to give amine 55 was achieved by hydrogenation (Pd/C). Compound 43 was obtained by amide coupling of amine 55 with carboxylic acid 59 using TBTU and N,N-diisopropylethylamine (DIPEA). Carboxylic acid 59 was synthesized in a two-step procedure from commercially available 3-methylbenzoyl chloride 56 and ethyl 2-isocyanoacetate 57 in presence of Et3N and DMAP to form oxazole-carboxylic ester 58, which was hydrolyzed under basic conditions to carboxylic acid 59.
In summary, our approach to identify novel orally active 2-SORAs started from an in-house HTS hit 1, originally characterized as a potent agonist in an unrelated GPCR agonist program.45 Our optimization efforts led to the discovery of pyrazole-derivatives as potent 2-SORAs that are devoid of this agonistic activity.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d3md00573a |
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