Guo-Yu
Lan
,
Wei-Yu
Chen
and
Huan-Tsung
Chang
*
Department of Chemistry, National Taiwan University, 1, Section 4, Roosevelt Road, Taipei, 10617, Taiwan. E-mail: changht@ntu.edu.tw; Fax: 011-886-2-3366-1171; Tel: 011-886-2-3366-1171
First published on 30th August 2011
We have used a simple method to prepare five fluorescent Ag nanoclusters (NCs) through the NaBH4-mediated reduction of Ag+ ions in the presence of various DNA scaffolds. The emission intensities and wavelengths (536–644 nm) of the as-prepared DNA–Ag NCs were dependent on the sequence and length of the DNA scaffold. Electrospray ionization mass spectrometry of the DNA–Ag NCs revealed that different numbers of Ag atoms (2–6 atoms) were present per DNA scaffold, depending on the number and position of the cytosine bases. Using the oligonucleotide 5′-CCC(TTCC)2TT(CCAA)2CCC-3′ (DNATAr2) as the scaffold, we obtained DNATAr2–Ag NCs exhibiting a quantum yield (Φf) of 61% at 608 nm; these NCs were stable in the presence of the tested thiols, Cl− ions and DNase I. Because of their strong fluorescence and stability, the DNATAr2–Ag NCs were highly selective and sensitive for the detection of Hg2+ ions [linear range: 2.5–50 nM; limit of detection (signal-to-noise ratio = 3): 0.9 nM]. We validated the practicality of this probe through analyses of several water samples spiked with Hg2+ ions (10 nM); the recoveries were 98–118%.
Relative to Au NCs and Au NDs,4a,bAg NCs usually exhibit greater values of Φf, but they are slightly less stable. Ag NCs can be prepared through sodium borohydride (NaBH4)-mediated reduction of Ag+ ions in the presence of polymeric templates [e.g., poly(N-isopropylacrylamide-acrylic acid-2-hydroxyethyl acrylate), poly(amidoamine), and DNA].1,5,6 Because DNA templates are highly hydrophilic and have strong affinity for Ag+ ions, they have become popular for the preparation of DNA–Ag NCs ever since the pioneering studies of Dickson and coworkers.1a Mass spectrometric analysis has revealed that DNA–Ag NCs typically feature 2–10 Ag atoms in each DNA scaffold.7 Furthermore, 1H NMR spectroscopy has revealed that Ag ions (atoms) have high affinity toward cytosine (C) bases through C–Ag–C coordination.1a Varying the length and sequence of the DNA template allows ready tuning of the optical properties of the DNA–Ag NCs.1,7a,8 For example, the emission wavelength of DNA–Ag NCs can be tuned from blue to the near-infrared merely by varying the sequence of a 12-base DNA template.1c These water-soluble DNA–Ag NCs exhibit excellent photostability, high values of Φf, and essentially no photoblinking within a period of 1 s.9 Nevertheless, their stability in high-salt media (e.g., physiological conditions) remains poor.7a In addition, the detection of trace amounts of analytes requires highly fluorescent DNA–Ag NCs.
In this study, we prepared five different DNA–Ag NCs that emitted at wavelengths ranging from 536 to 644 nm. We investigated the effects of the length and sequence of the DNA templates on the sizes and optical properties of the DNA–Ag NCs, and monitored the thiol-induced fluorescence quenching and stability of the as-prepared DNA–Ag NCs against nuclease degradation. Finally, we employed the DNA–Ag NCs for the sensitive and selective detection of Hg2+ ions.
Name | 1 | 2 | 3 | 4(DNATAr1) | 5(DNAAAr1) | 6 | 7 | 8 | 9 | 10(DNATAr2) | 11(DNATAr5) | 12(DNATAr6) |
---|---|---|---|---|---|---|---|---|---|---|---|---|
a λ ex: 460 nm. b λ ex: 540 nm. c —: No observed fluorescence band. d τ and Φf are the fluorescence quantum yield and lifetime of the DNA–Ag NCs, respectively. e Values of m/z obtained from ESI-MS data. f N: Number of encapsulated Ag atoms. | ||||||||||||
Structure | ||||||||||||
λ em (nm)c | — | — | — | 536a | 546a | — | — | — | — | 608b | 620b | 644b |
Φ f (%)d | — | — | — | 8 | 10 | — | — | — | — | 61 | 21 | 25 |
τ (ns)d | — | — | — | — | — | — | — | — | — | 2.7 ± 0.2 | 2.6 ± 0.2 | 3.1 ± 0.3 |
m/z (amu)e | — | — | — | 388.5 | 714.9 (domain), 730.1 (minor) | — | — | — | — | 696.0 (domain), 703.3 (minor) | 1010.6 (domain), 1019.3 (minor) | 843.7 (domain), 847.8 (minor) |
N f | — | — | — | 2 | 2 | — | — | — | — | 4, 5 | 5, 6 | 6 |
The molecular masses of the DNA strands and number of Ag atoms bound to these five distinct DNA–Ag NCs were determined using an LTQ mass spectrometer (Thermal Fisher, San Jose, CA, USA). Prior to conducting electrospray ionization mass spectrometry (ESI-MS), the as-prepared DNA–Ag NCs were purified through centrifugal filtration (13500 g, 15 min; filter cutoff: 3 kDa) and then washing with ultrapure water (3 × 450 μL) three times. Samples for ESI-MS measurement were prepared by mixing one of the DNA strand solutions or one of the DNA–Ag NC solutions (50 μL) with isopropyl alcohol (50 μL) to enhance the ionization efficiency.11 Direct ESI infusion was performed using a capillary column (375 μm o.d., 50 μm i.d.) tapered to 20 μm i.d. The flow rate was set at 250 nL min−1 using a syringe pump (New Era Pump Systems, NE-1000, Wantagh, NY); an ESI voltage of 1.8 kV was applied to the syringe for ESI infusion.
We further investigated the effect of the distance between the repeated cytosine units (using DNA templates 4, 6, and 7) and the number of repeated cytosine units (using DNA templates 2, 4, and 9) in the DNA scaffolds. Among the DNA templates 4, 6, and 7, only the DNA template 4 led to the preparation of strongly fluorescent DNA–Ag NCs. Increasing the number of A–T pairs made it more difficult to form coordinated C–Ag–C units and, thereby, fewer fluorescent species. Comparison of the results obtained using the DNA templates 2, 4, and 9 revealed that the favorable effects of cytosine 2-mers located close to the cytosine 3-mers in the DNA scaffold; presumably, the two additional C–Ag–C bonds further stabilized the Ag NCs.7 Unexpectedly, the DNA template 9 did not form fluorescent products, suggesting that the three inside C–Ag–C bonds and the two T–A pairs destabilized the formation of the three terminal C–Ag–C units. The as-prepared DNATAr1–Ag NCs (using DNA template 4) exhibited green emission (λem = 536 nm) when excited at 460 nm, with a value of Φf of approximately 8%. Of the DNA–Ag NCs prepared from the DNA templates 4 and 5, the latter exhibited slightly stronger fluorescence (DNAAAr1–Ag NCs; Φf = ca. 10%). The two A–T pairs in the DNA template 4 presumably inhibited C–Ag–C coordination, consistent with the slightly more negative ellipticity (−5.7 mdeg) obtained for the DNATAr1–Ag NCs relative to that (−2.9 mdeg) of the DNAAAr1–Ag NCs (Table S1†).
Next, we investigated the effect of the number of repeated CC bases on the preparation of DNA–Ag NCs using the DNA templates 10–12 (Table 1). Fig. 1a reveals that the DNATAr2–, DNATAr5–, and DNATAr6–Ag NCs emitted at wavelengths of 608, 620, and 644 nm, respectively, when excited at 540 nm. Notably, the DNATAr3– and DNATAr4–Ag NCs exhibited fluorescence properties similar to those of the DNATAr2–Ag NCs (each of them has a visible absorption band near 543 nm, revealing that they have similar transition energies); as a result, we do not further discuss their performance hereafter. Fig. 1b indicates that, in addition to an absorption peak at a wavelength of 460 nm, the spectrum of the DNATAr2–Ag NCs featured a noticeable absorption band at 540 nm, resulting from a more highly discrete and quantum-confined electronic transition.3,14 Accordingly, the DNATAr2–Ag NCs exhibited stronger fluorescence (Φf = ca. 61%) when excited at 540 nm. The quantum yields (Φf) for the five DNA–Ag NCs were measured according to the literature,15 using fluorescein (Φf = 0.79) for the DNATAr1 and DNAAAr1–Ag NCs and cresyl violet (Φf = 0.54) for the DNATAr2–, DNATAr5–, DNATAr6–Ag NCs as standard fluorophores (Table 1). The maximum absorption wavelengths of the DNATAr1– and DNAAAr1–Ag NCs were 460 nm, and those of the DNATAr2–, DNATAr5–, and DNATAr6–Ag NCs were 540 nm (Fig. 1b). Each of the decaying slopes from 630–700 nm was subtracted from the absorbance of the DNA–Ag NCs. To the best of our knowledge, these Ag NCs are among the most fluorescent ever reported.1c,7a Notably, the fluorescence intensity of the DNATAr2–Ag NCs when excited at 540 nm was approximately eight-fold greater than that when excited at 460 nm. Upon increasing the number of repeated CC bases, more Ag atoms assembled in the DNA scaffolds, leading to the formation of DNA–Ag NCs of greater size. ESI-MS data (Table 1) for the DNATAr1–Ag, DNAAAr1–Ag, DNATAr2–Ag, DNATAr5–Ag, and DNATAr6–Ag NCs revealed that there were 2, 2, 4 (5 minor), 5 (6 minor), and 6 Ag atoms, respectively, in each DNA scaffold. These data support the notion that the emission wavelength underwent a red shift upon increasing the number of Ag atoms.17 The lifetimes (ca. 2–3 ns) of our DNA–Ag NCs (Table 1) were similar to those reported previously for DNA–Ag NCs.1c,7a,16
Fig. 1 (a) Fluorescence and (b) UV–Vis spectra of the five distinct DNA–Ag NCs. Each of the mixtures, containing phosphate (20 mM, pH 7.0), AgNO3 (300 μM), a DNA template (50 μM), and NaBH4 (300 μM), was reacted at 27 °C for 6 h. The fluorescence colors of the products DNATAr1–Ag, DNAAAr1–Ag, DNATAr2–Ag, DNATAr5–Ag, and DNATAr6–Ag NCs were green, yellow, orange, saffron, and red, respectively. The fluorescence intensities have all been normalized to 1.0. Excitation wavelength: 460 nm for the first two NCs; 540 nm for the others. |
We employed CD to examine the changes in the DNA conformations before and after formation of the DNA–Ag NCs. The ellipticity at 284 nm of ds-DNA is typically smaller than that of ss-DNA.18 The CD data in Table S1 revealed that the hairpin-like structures of the DNA scaffolds in the DNA–Ag NCs were different from the (random-coil) structures of the DNA templates.13a The free forms of our DNA samples all exhibited positive ellipticities (mdeg)—at approximately 280 nm for DNA templates 4, 5, and 10 and at 294 nm for DNA templates 11 and 12—whereas those for the DNATAr1–, DNAAAr1–, and DNATAr2–Ag NCs were negative because the hairpin-like structures formed through C–Ag–C coordination induced the formation of nonplanar and tilted orientations of the bases relative to the helical axis.1a,10 The negative ellipticities of the DNA scaffolds in the DNA–Ag NCs were less than those in the presence of Ag+ ions (before adding NaBH4), mainly because of the weaker interactions of the DNA strands with Ag atoms than with Ag+ ions.19 The smaller changes in ellipticity for the NCs prepared from the DNA templates 11 and 12 reveal that their interactions with Ag+ ions and Ag atoms were relatively weak, mainly because of their stronger inter-DNA interactions and DNA hybridization.20 As a result, relative to the DNATAr1–, DNAAAr1–, and DNATAr2–Ag NCs, the DNATAr5– and DNATAr6–Ag NCs fluoresced more weakly.
The as-prepared DNATAr2–Ag NCs were stable in the presence of MPA at concentrations of up to 0.5 μM (Fig. 2a) and their fluorescence was quenched by only 39% in the presence of 1.5 μM MPA. Thus, the as-prepared DNATAr2–Ag NCs were much more stable than our previously fabricated ones and most other reported DNA–Ag NCs, mainly because of stronger interactions between Ag atoms and the DNATAr2 scaffolds.7a,10,19 The effect of NaCl (Cl−) on the chemical stability of the DNATAr2–Ag NCs in Fig. S1.† The fluorescence intensity of the DNA–Ag NCs remained constant at the NaCl concentrations up to about 50 mM. The fluorescence intensity of the DNATAr2–Ag NCs at 4 °C remained constant for about three days and then decreased (Fig. S2†). The emission wavelength did not shift. To further support the fact that the DNA scaffold stabilized these Ag NCs, we further investigated their resistance to nuclease digestion. It is known that DNA nuclease digests the DNA templates of DNA–Ag NCs, leading to decreases in their fluorescence intensities.12,21 The fluorescence of our DNATAr2-Ag NCs decreased only by 14% in the presence of 5.0 μg mL−1 of DNA nuclease I (Fig. 2b). In the control experiment, the fluorescence of the MB was enhanced dramatically (ca. 19-fold) in the presence of 5.0 μg mL−1 of DNA nuclease I (Fig. 2c). Fluorescence resonance energy transfer occurs more efficiently when the distance between the FAM and DABCYL units is shorter (i.e., when the MB forms a hairpin structure). DNA nuclease I bound to the single-stranded loop portion of the MB and cleaved it, thereby significantly increasing the distance between the FAM and DABCYL units and restoring the fluorescence of the MB. Our results support that the DNA scaffolds were more stable on the surfaces of Ag NCs, mainly because of the formation of a Ag-mediated duplex structure.13a,b,20 The unusual stability and high value of Φf of the DNATAr2–Ag NCs in the presence of thiols, NaCl and DNA nuclease I suggest that they hold great potential for use in vivo and in vitro bioassays.
Fig. 2 (a) Fluorescence intensities of the DNATAr2–Ag NCs (0.01×) in the presence of MPA (0, 0.05, 0.25, 0.5, 1.0, or 1.5 μM). Buffer: 20 mM phosphate (pH 7.0); incubation time: 30 min. (b, c) Fluorescence intensities of the (b) DNATAr2–Ag NCs (0.01×) and (c) MB (500 nM) in the (A) absence and (B) presence of DNase I (5.0 μg mL−1). Buffer: 5 mM phosphate buffer (pH 7.0) containing 10 mM NaCl and 5 mM Mg(NO3)2. Incubation time: 60 min. |
Fig. 3 (a) Fluorescence quenching ratios plotted as a function of the concentration of Hg2+ ions. Inset: Plot of the value of (IF0 − IF)/IF0 for the DNATAr2–Ag NCs with respect to the concentration (0–50 nM) of the spiked Hg2+ ions. (b) Selectivity and sensitivity of the DNATAr2–Ag NC probe toward Hg2+ ions. Concentration of Hg2+ ions: 0.1 μM; concentrations of each other metal ion: 1 μM. DNA–Ag NCs were diluted with 20 mM phosphate solution (pH 5.0) to a final concentration of 0.004×. Reactions were performed at 25 °C for 30 min. Error bars represent standard deviations from three replicate sample measurements. |
We tested the practicality of our DNATAr2–Ag NC probe through the analyses of real water samples (ground water, tap water, and drinking water). We applied a standard addition curve (from 0 to 50 nM; R2 = 0.98) to determine the recoveries of Hg2+ ions (10 nM) spiked in these water samples. The high recoveries (98–118%, Table S2† in ESI) from these environmental samples reveal low matrix effects.
Footnote |
† Electronic Supplementary Information (ESI) available: Fig. S1–S2 and Tables S1–S2. See DOI: 10.1039/c1ra00181g/ |
This journal is © The Royal Society of Chemistry 2011 |