Shinji Yamada*, Nodoka Sako, Mai Okuda and Atsuko Hozumi
Department of Chemistry, Faculty of Science, Ochanomizu University, 2-1-1 Otsuka, Bunkyo-ku, Tokyo 112-8610, Japan. E-mail: yamada.shinji@ocha.ac.jp; Tel: +81 3 5978 5349
First published on 22nd October 2012
A supramolecular dual-synthon with 2R4(10) ring and columnar motifs is observed in crystal structures of all 2-, 3- and 4-methylstyrylpyridinium chlorides and 3-bromo-, 3-nitro- and 4-trifluoromethylstyrylpyridinium chlorides. The dual-synthon assembled through N–H⋯Cl− and C–H⋯Cl− hydrogen bonds and cation–π interactions forms both ladder-like and head-to-head or head-to-tail columnar motifs. The position of the methyl group at the benzene ring affects the size and shape of the channel structure. Infinite hydrogen bond networks involving chloride anions, water and HCl molecules are found in the channels of 3- and 4-methylstyrylpyridinium chlorides. Variations in electron-withdrawing groups such as Br, NO2 and CF3 have little effect on the crystal structures.
Fig. 1 (a) Supramolecular synthons (I) and (II) observed in crystals and co-crystals of pyridine, respectively. (b) Reported supramolecular columnar motifs (III) for styrylpyridine hydrochloride hydrate and a supramolecular dual-synthon (IV) observed in substituted pyridinium chloride. |
Recently, we have reported the crystal structure of styrylpyridinium chlorides8,9 in which H-bond networks involving chloride anions and water molecules as well as cation–π interactions contribute to stabilize a head-to-tail columnar motif III.9 Continuing our research on the crystal engineering of pyridinium compounds through cation–π interactions,10 we found a different packing motif IV with a 2R4(10) ring system11 involving N–H⋯Cl− and C–H⋯Cl− hydrogen bonds as well as a columnar motif stabilized by pyridinium–π interactions as shown in Fig. 1b. In this paper, we report that a new supramolecular dual-synthon12 IV was commonly observed in the crystal structures of methylstyrylpyridinium chlorides (1a–1c)13 and 3-bromo- (2),14 3-nitro- (3)15 and 4-trifluorostyrylpyridinium chloride (4)16 (Fig. 2).
Fig. 2 Substituted styrylpyridinium hydrochlorides. |
Crystal data for 1a: C14H14NCl, M = 231.72, monoclinic, a = 4.84119(15), b = 31.5272(10), c = 7.9505(3) Å, β = 93.844(3)°, V = 1210.75(7) Å3, T = 123 K, space group P21/n, Z = 4, 12451 reflections measured, 2173 unique (Rint 0.1540) reflections were used in all calculations. The final R1 and wR2 were 0.0929 and 0.2658(all data). CCDC 888277.
Crystal data for 1b: (C14H14NCl)2·(H2O)4·(HCl), M = 580.03, monoclinic, a = 18.1754(4), b = 6.91256(13), c = 25.7534(5) Å, β = 110.5550(9)°, V = 3029.62(10) Å3, T = 123 K, space group P21/n, Z = 4, 34040 reflections measured, 5380 unique (Rint 0.0608) reflections were used in all calculations. The final R1 and wR2 were 0.0741 and 0.2346(all data). CCDC 888278.
Crystal data for 1c: (C14H14NCl)2·(H2O)2·(HCl), M = 535.94, triclinic, a = 4.8772(2), b = 16.2559(7), c = 18.5704(8) Å, α = 80.839(3), β = 87.297(2), γ = 84.649(3)°, V = 1446.41(11) Å3, T = 123 K, space group P, Z = 2, 15023 reflections measured, 5102 unique (Rint 0.1142) reflections were used in all calculations. The final R1 and wR2 were 0.0884 and 0.2236(all data). CCDC 888279.
Crystal data for 2: C13H11NClBr, M = 296.59, monoclinic, a = 4.70335(13), b = 32.1116(9), c = 8.1926(3) Å, β = 98.0162(19)°, V = 1225.26(6) Å3, T = 123 K, space group P21/n, Z = 4, 12515 reflections measured, 2230 unique (Rint 0.1167) reflections were used in all calculations. The final R1 and wR2 were 0.0658 and 0.1743(all data). CCDC 901989.
Crystal data for 3: C13H11N2O2Cl, M = 262.70, triclinic, a = 4.79000(10), b = 8.28058(17), c = 16.2189(4) Å, α = 105.8270(14)° β = 91.5910(13)°, γ = 98.6340(14)°, V = 610.30(3) Å3, T = 123 K, space group P1, Z = 2, 6630 reflections measured, 3636 unique (Rint 0.0488) reflections were used in all calculations. The final R1 and wR2 were 0.0449 and 0.1981(all data). CCDC 901990.
Crystal data for 4: C14H11NF3Cl, M = 285.70, triclinic, a = 5.0232(3), b = 7.3643(3), c = 17.3038(8) Å, α = 92.657(3), β = 91.992(3), γ = 92.424(4)°, V = 638.42(5) Å3, T = 123 K, space group P, Z = 2, 6734 reflections measured, 2267 unique (Rint 0.0899) reflections were used in all calculations. The final R1 and wR2 were 0.0631 and 0.1487(all data). CCDC 901991.
Fig. 3 Crystal structure of 1a. (a) Top view of the packing structure. The 2D sheet motif contains dual-synthons, A and B. (b) Side view of the column with a head-to-head arrangement. |
The methyl group is directed toward the olefinic hydrogens of the neighboring molecule in the tape so as to avoid steric repulsion; the distances between the methyl carbon C14i and H4, H6 and H9 are 3.643, 3.568 and 3.690 Å, respectively. The molecules were arranged in a head-to-head and face-to-face fashion to form columns as shown in Fig. 3b. The pyridinium and benzene rings reside above and below the double bond moiety. The distances between the centroids of the double bond and those of the pyridinium and aryl moieties are 3.379 Å and 3.410 Å, respectively, suggesting that the columns are stabilized by cation–π10 and π–π interactions.
These structural features are speculated to result from the self-assembly of the dual-synthon motif IV (Fig. 1b). The H-bond networks contribute to the formation of a 2D sheet with a ladder-like motif and the cation–π interactions assist in the formation of the columnar motif perpendicular to the sheet, thus leading to an overall 3D network.
The crystals of 1b shown in Fig. 4 included an extra 0.5 equiv. of HCl and 2 equiv. of water molecules with a P21/n space group. The crystals contained two independent molecules in an asymmetric unit. Thermogravimetric analysis of 1b shows 20.4 wt% loss at 353 K (see the ESI† for the thermogravimetric analysis), which is in agreement with the involved 2H2O and 0.5HCl molecules as observed in the X-ray structure. The molecules were associated via the same dual-synthon as that of 1a to form a 2D sheet motif, which is very similar to that of 1a (Fig. 4a). This tape consists three ring systems A to C. A and C are centrosymmetric and B is acentrosymmetric, which form a ladder-like motif. The D⋯A distances of N1–H⋯Cl2 (3.032(4) Å) and N2–H⋯Cl1 (3.087(5) Å) are very close each other. Those of C1–H⋯Cl2ii, C5–H⋯Cl1, C15–H⋯Cl1 and C19–H⋯Cl2 are 3.488(6), 3.543(6), 3.673(5) and 3.547(6) Å, respectively (Fig. 4a). The orientation of molecules in a head-to-tail fashion, forming infinite columns perpendicular to the 2D sheet, is significantly different from that of 1a. The distances between the centroids of the benzene and pyridinium rings are 3.528 and 3.645 Å, suggesting the contribution of intermolecular cation–π interactions between the pyridinium ring and the aryl moiety. This arrangement allows the two double bonds to be close each other.
Fig. 4 Crystal structure of 1b. (a) Packing structure from top view. The 2D sheet motif contains dual-synthons A–C. (b) Side view of the column with a head-to-tail arrangement. (c) Side view of the channel showing the incorporated chloride anion, HCl and water molecules. |
The methyl group at the 3-position is orientated toward the C26 of the neighboring molecule to form channels between the columns as shown in Fig. 4c. The channels are occupied by chloride anions as well as water and HCl molecules, which are linked to one another by a combination of O–H⋯Cl−, Cl–H⋯Cl− and O–H⋯O hydrogen bonds to form a tape motif containing a T5(2) ring system.19
The molecules in a column are alternatively linked to different hydrogen bond network systems; therefore, two hydrogen bond networks assist one head-to-tail column (Fig 4c). This is similar to the reported water-assisted assembly of styrylpyridinium chloride.9
A single crystal of 1c contains two independent molecules in an asymmetric unit with one equiv. of water and 0.5 equiv. of HCl molecules. 1c crystallized in a triclinic system with a P space group. Thermogravimetric measurement of 1c shows 12 wt% loss at 410 K (see the ESI† for the thermogravimetric analysis), which is almost in agreement with the involved H2O and 0.5HCl molecules as observed in the X-ray structure. The crystal structure is shown in Fig. 5. The dual-synthons A–C assemble to form a ladder-like motif similar to that in the crystals of 1b (Fig. 5a). The molecules are arranged in a head-to-head and face-to-face fashion to form columns as shown in Fig. 5b, which is very similar to the case of 1a. The pyridinium ring resides above the double bond moiety. The distances between the centroids of the double bond and the pyridinium and benzene rings are 3.403 Å and 3.464 Å, respectively.
Fig. 5 Crystal structure of 1c. (a) Top view of the packing structure. The 2D sheet motif contains dual-synthons A–C. (b) Side view of the column with a head-to-tail arrangement. (c) Side view of the channel showing the incorporated chloride anion, HCl and water molecules. |
The methyl group at the 4-position is located at the edge of the tape, thus facilitating the formation of a large channel in combination with the neighboring tape (Fig. 5a). This channel is much larger than that of 1b, and contains water and HCl molecules and chloride anions forming hydrogen bond networks. These form two 2D chain motifs (Fig. 5c). The HCl molecules occupy two different sites in the asymmetric unit with occupancies of 51.6 and 48.4%.
A comparison among these crystal structures of 1a–1c clearly shows that the tape motifs are grouped into types I and II as shown in Fig. 6. Type I consists of two centrosymmetric rings A and B. On the other hand, type II consists of three rings A–C, in which A and C are centrosymmetric and B is acentrosymmetric. These are repeated to form ladder-like motifs, A–B–A–B and A–B–C–A–B–C (Fig. 6). The ladder-like motif of 1a is classified into type I, whereas those of 1b and 1c are classified into type II, as the structures contain channels between columns.
Fig. 6 Two types of ladder-like motifs. |
The X-ray crystallographic analyses of 2–4 clarified that they have the same supramolecular dual-synthon IV as that observed in 1a. In all of the structures, a chloride anion is linked with three molecules through hydrogen bonds with C1–H, N1–H and C5–H, forming a type I ladder-like motif described above. The molecules were arranged in a head-to-head and face-to-face fashion to form columns through cation–π interactions between the pyridinium and the double bond. Table 1 summarized the distances and angles for the hydrogen bonds, C1–H⋯Cl1, N1–H⋯Cl2 and C5–H⋯Cl3, and the separation between the double bond with the pyridinium and aryl rings of 2–4 as well as 1a–1c for comparison.
1a | 1ba | 1ca | 2 | 3 | 4 | 5b | |
---|---|---|---|---|---|---|---|
a Data for synthons A and B.b Data obtained from the structure in ref. 23.c Distances of Py⋯Ar. | |||||||
C1–H⋯Cl1 | |||||||
C1⋯Cl1 (Å) | 3.427(5) | 3.488(6) | 3.587(8) | 3.495(7) | 3.509(10) | 3.331(4) | 3.518 |
H⋯Cl1 (Å) | 2.633 | 2.789 | 2.673 | 2.654 | 2.678 | 2.834 | 2.874 |
∠C1–H–Cl1 (°) | 141.34 | 136.28 | 161.71 | 147.89 | 148.42 | 113.65 | 127.44 |
N1–H⋯Cl2 | |||||||
N1⋯Cl2 (Å) | 3.025(4) | 3.032(4) | 3.076(5) | 3.016(5) | 3.004(6) | 3.275(3) | 3.083 |
H⋯Cl2 (Å) | 2.184 | 2.201 | 2.241 | 2.189 | 2.180 | 2.649 | 2.329 |
∠N1–H–Cl2 (°) | 159.66 | 157.04 | 158.37 | 156.58 | 156.08 | 129.06 | 146.58 |
C5–H⋯Cl3 | |||||||
C5⋯Cl3 (Å) | 3.492(6) | 3.547(6) | 3.416(7) | 3.400(6) | 3.495(8) | 3.575(3) | 3.400 |
H⋯Cl3 (Å) | 2.639 | 2.726 | 2.778 | 2.742 | 2.859 | 2.987 | 2.694 |
∠C5–H–Cl3 (°) | 149.55 | 145.1 | 125.43 | 127.08 | 124.88 | 121.47 | 133.25 |
Py⋯CC (Å) | 3.379 | 3.645c | 3.403 | 3.402 | 3.413 | 3.594 | 3.542 |
Ar⋯CC (Å) | 3.410 | 3.528c | 3.464 | 3.436 | 3.467 | 3.614 | 3.485 |
Compound 2 crystallized in a monoclinic system with a P21/n space group. The D⋯A distances of N1–H⋯Cl2, C1–H⋯Cl1 and C5–H⋯Cl3 are listed in Table 1. These distances are shorter than those of 3-methyl derivative 1b. The distances between the centroids of the double bond and those of the pyridinium and aryl moieties are also shorter than those of 1b. These structural features may be responsible for the absence of channels in the crystal structure.
Compound 3 crystallized in a triclinic system, space group P1, the single crystal of which contains two independent molecules in an asymmetric unit. Although an electron-withdrawing group weakens the cation–π interaction,8,10a the separation between the molecules is close to those for 1a–1c and 2, suggesting that the interaction still exists between the molecules (Fig. 7). The nitro group at the 3-position plays an important role in the stabilization of the sheet motif. The nitro group at the 3-position links the neighboring tape through C9–H⋯O and C11–H⋯O hydrogen bonds (3.508 and 3.279, respectively)20 to form an infinite sheet structure. This may contribute to the stability of the packing structure and be responsible for the absence of channels in the crystal structure, which is contrary to the crystal structure of 1b.
Fig. 7 Crystal structure of 3. Top view of the packing structure. The 2D sheet motif contains dual-synthons A and B. |
Compound 4, having a CF3 group at the 4-position, crystallized in a triclinic system with a space group P. The hydrogen bond networks were different from those of the others: a chloride ion links with the two N atoms and the four C atoms through N–H⋯Cl and C–H⋯Cl hydrogen bonds, respectively (see the ESI†). The N⋯Cl distances are longer and the bond angles for these hydrogen bonds are much smaller than those of the others as shown in Table 1. These structural features suggest that although 4 contains the same dual-synthon IV (Fig 1b), the additional hydrogen bonds led to distortion in the ladder-like motif.21 It should be noted that an F⋯F interaction was observed between the CF3 groups of the neighboring columns22 (Fig. 8). The 2.791 Å of the F⋯F distance is shorter than the sum of the van der Waals radii of the fluorine ions, thus contributing to the stability of the packing structure. This may be responsible for the absence of channels in the crystal structure, which is contrary to the crystal structure of 1c, which involves channels occupied by H2O and HCl molecules.
Fig. 8 F⋯F interaction in the crystal structure of 4. |
Footnote |
† Electronic supplementary information (ESI) available: Distances and angles of intermolecular hydrogen bonds in the crystals of 1b and 1c, TGA chart for 1b and 1c, crystal structures of 2–5, and refcode for styrylpyridinium chlorides. CCDC 888277–888279 and 901989–901991. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c2ce26547h |
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