Jingjing
Zheng
,
Prasenjit
Seal
and
Donald G.
Truhlar
*
Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, USA. E-mail: truhlar@umn.edu
First published on 24th September 2012
Aldehyde–radical reactions are important in atmospheric and combustion chemistry, and the reactions studied here also serve more generally to illustrate a fundamental aspect of chemical kinetics that has been relatively unexplored from a quantitative point of view, in particular the roles of multiple structures and torsional anharmonicity in determining the rate constants and branching ratios (product yields). We consider hydrogen abstraction from four carbon sites of butanal (carbonyl-C, α-C, β-C and γ-C) by hydroperoxyl radical. We employed multi-structural variational transition state theory for studying the first three channels; this uses a multi-faceted dividing surface and allows us to include the contributions of multiple structures of both reacting species and transition states. Multi-configurational Shepard interpolation (MCSI) was used to obtain the geometries and energies of the potential energy surface along the minimum-energy paths, with gradients and Hessians calculated by the M08-HX/maug-cc-pVTZ method. We find the numbers of structures obtained for the transition states are 46, 60, 72 and 76respectively for the H abstraction at the carbonyl C, the α position, the β position and the γ position. Our results show that neglecting the factors arising from multiple structures and torsional anharmonicity would lead to errors at 300, 1000 and 2400 K of factors of 8, 11 and 10 for abstraction at the carbonyl-O, 2, 11 and 25 at the α-C position, 2, 23 and 47 at the β-C position, and 0.6, 8 and 18 at the γ-C position. The errors would be even larger at high temperature for the reverse of the H abstraction at the β-C. Relative yields are changed as much as a factor of 7.0 at 200 K, a factor of 5.0 at 298 K, and a factor of 3.7 in the other direction at 2400 K. The strong dependence of the product ratios on the multi-structural anharmonicity factors shows that such factors play an important role in controlling branching ratios in reaction mechanism networks.
Reaction rates for butanal reactions with radicals have been measured for OH,2–5 CH3,6,7 NO3,5 and O,7 but there is no experimental data for H atom abstraction reactions from butanal by hydroperoxyl radical, which is an important species at intermediate temperatures in ignition processes. These H abstraction reactions are an important source of H2O2, which can decompose to form two ˙OH radicals.
The objective of the present article is to provide reliable theoretical rate constants for the H-atom abstraction from three sites of butanal, carbonyl-C, α-C and β-C, to yield respectively butanoyl radical, 1-oxo-2-butyl radical and 4-oxo-2-butyl radical. In each case, hydrogen peroxide is also produced. The three reactions are:
CH3CH2CH2CHO + ˙O2H ↔ CH3CH2CH2C˙O + H2O2 | (R1) |
CH3CH2CH2CHO + ˙O2H ↔ CH3CH2C˙HCHO + H2O2 | (R2) |
CH3CH2CH2CHO + ˙O2H ↔ CH3C˙HCH2CHO + H2O2 | (R3) |
For completeness, we also studied the energetics and partition functions of the H-atom abstraction from the γ-C that yields 4-oxo-1-butyl radical. This reaction is
CH3CH2CH2CHO + ˙O2H → C˙H2CH2CH2CHO + H2O2 | (R4) |
A key issue in calculating these reaction rates is the existence of multiple conformers of the reactants and the saddle points of the reactions. It is well known that it is important to consider all the conformational structures in analyzing a reaction mechanism. However, the purpose of conformational structure search is usually simply to find the global-minimum structures, and the higher-energy structures are not used in calculating enthalpies, entropies and free energies. Furthermore, although conformational searches for the low-energy structures of a stable molecule are common, it is much less common to try to locate all saddle point structures for a single reaction. Without finding all the conformational structures of the transition state of a reaction—or at least all the low-energy ones, a reaction barrier height can only be based on an arbitrarily selected saddle point, and this is not meaningful even if it is calculated by a high-level ab initio method. The existence of multiple conformational structures for both the reactants and the transition state has an important effect on the calculated reaction rates, but it is often ignored or treated in an incomplete way in studying reaction kinetics and thermodynamics, as for example in some earlier studies of hydrogen abstraction reactions.8–12
In the present paper, we will study the importance of multiple structures and torsional anharmonicity in determining reaction rates and reactivity of various channels (branching ratios) over a wide range of temperature of interest in atmospheric chemistry and in combustion. This study will show large errors when only the global minima of the reactant and transition state are used for calculations. Therefore we go beyond the standard textbook treatment in terms of a single structure of reactants and a single structure of the transition state, and we include multi-structural anharmonicity by using the recently proposed multi-structural variational transition state theory (MS-VTST).13,14
In textbooks, the transition state theory rate constant of a bimolecular reaction is usually given by17
(1) |
ΦR = ΦRrelQRelQRvibQRrot | (2) |
In the present work, the electronic partition functions of HO2 and all the organic radicals are set to two to account the degenerate spin states of the radical, and the electronic partition functions of the closed-shell molecules are set equal to unity because they have no low-lying electronic states.
Variational transition state theory for a canonical ensemble is called canonical variational theory20–22 (CVT). The single-structure CVT rate constant including multidimensional tunneling (MT) may be written as23
kSS-CVT/MT = κ(T)Γ(T)kSS-TST(T) | (3) |
(4) |
In most cases we choose the reaction path as the minimum-energy path (MEP) in isoinertial coordinates,27,28 and in particular, that is the choice made in the present article.
However, even for molecules that are moderately complex, one cannot generate all the low-energy structures by independent internal rotations, and so the above equations cannot treat the effect of multi-structural anharmonicity in the general case. There are two reasons for this. First, the normal modes do not correspond to individual torsions but often correspond to a mixture of two or more torsions and often also some low-frequency bends. Second, the total number of structures is often not the ideal number; for example, for n-heptane and isoheptane, there are respectively 4 and 3 relevant torsions (this excludes methyl torsions because they do not generate distinguishable structures due to symmetry), and since they are all threefold (two gauche and one trans), that ideally generates 34 = 81 and 33 = 27 structures; but the actual number of structures is 58 and 37, respectively.29 (Note that in the original paper,29 the number of structures of n-heptane was miscounted as 59, which affects the partition function about 2% at low temperature, e.g., 200 K.) The MS-T approximation15,16 uses internal coordinates and a coupled treatment of torsions and overall rotations to treat the transition from a low-T approximation corresponding to collection of local harmonic potentials to a high-T approximation corresponding to unhindered coupled internal rotations. The MS-T approximation replaces the separable product of Qvib and Qrot by a nonseparable conformational–rotational–vibrational partition function, Qcon-rovib. Incorporating the MS-T approximation into CVT in a convenient fashion yields multi-structural canonical variational theory with tunneling, with a bimolecular rate constant given by13,14,30
kMS-CVT/MT = FMS-T(T)kSS-CVT/MT(T) | (5) |
(6) |
Note that the partition functions QXvib and QXrot (X = ‡ or R) are the same as those in eqn (1) so that these single-structure partition functions can be cancelled in the MS rate. The MS-T conformational–rovibrational partition function is given by15
(7) |
The multidimensional tunneling approximation employed in the present work is the small-curvature tunneling (SCT) approximation.24 In this approximation, κ is defined as the ratio of a thermally averaged approximate quantal transmission probability to a thermally averaged quasiclassical one, and the approximate quantal transmission probability takes account of both the multidimensional energy requirements of the vibrational modes transverse to the reaction coordinate and the corner-cutting tunneling induced by the multidimensional reaction-path curvature, which is treated in the small-curvature limit.21,22,25,26 The “quasiclassical” result is a calculation in which reaction-coordinate motion is classical, and motions transverse to the reaction coordinate are quantized (this is sometimes labeled as “semiclassical” or “hybrid” in other papers, but “quasiclassical” is the language we have settled on in recent years31 as that which is least subject to confusion). Then eqn (3) becomes
kSS-CVT/SCT = κSCT(T)kSS-CVT(T) | (8) |
kSS-CVT = Γ(T)k‡(T) | (9) |
Note that we use the κ and Γ calculated from only a single reaction path to represent these effects as resulting from all reaction paths. A more comprehensive treatment would be provided by multi-path variational transition state theory (MP-VTST),14,32 which involves the calculation of tunneling contributions and variational effects from more than one reaction path. But the MP-VTST approximation requires larger computational effort than the MS-VTST one, and we adopt MS-VTST here for this reason and because using a single reaction path provides a reasonable compromise approximation applicable to many reactions of large molecules. A case in which MS-VTST and MP-VTST have been compared for a smaller, but similar system is ethanol + OH.14 On the basis of our experience14,29,32 we believe that MS-VTST is a useful practical scheme, and it reasonable approximations can often be obtained without including multiple paths.
The conformational–rotational–vibrational partition functions are calculated by the MSTor16,33 program. The POLYRATE34 program is used to calculate reaction paths and single-structure reaction rate constants.
V‡r = V‡f − ΔU | (10) |
We also used a more approximate method, called the “jun–jun” approximation, to approach the quality of the CCSD(T)-F12a/jun-cc-pVTZ method. The jun–jun energy is defined as
Ejun–jun = ECCSD(T)-F12a/jun-cc-pVDZ + (EMP2-F12/jun-cc-pVTZ − EMP2-F12/jun-cc-pVDZ) | (11) |
For butanal, butanoyl radical, 1-oxo-2-butyl radical and 4-oxo-2-butyl radical, the torsion angles that were used in searching for distinguishable structures are O5–C1–C2–C3 and C1–C2–C3–C4. For the three transition states, the torsional angles that yield distinct structures are O5–C1–C2–C3, C1–C2–C3–C4, O5–C1–H8–O6, C1–H8–O6–O7 and H8–O6–O7–H9 for the R1 TS; O5–C1–C2–C3, C1–C2–C3–C4, C1–C2–H9–O6, C2–H9–O6–O7 and H9–O6–O7–H8 for the R2 TS; O5–C1–C2–C3, C1–C2–C3–C4, C2–C3–H11–O6, C3–H11–O6–O7 and H11–O6–O7–O8 for the R3 TS; and O13–C11–C8–C5, C11–C8–C5–C1, C8–C5–C1–H2, C5–C1–H2–O14, C1–H2–O14–O15 and H2–O14–O15–H16 for the R4 TS. For independent and ideal torsions, the number of conformational structures would be where Mτ and στ are respectively the periodicity and symmetry of torsion τ. However, the torsions are not ideal for most cases, for example, the periodicity of C1–C2 rotation in butanal is 3 when the torsion C1–C2–C3–C4 is in trans conformation, and it is 2 when the torsion C1–C2–C3–C4 is in a gauche conformation. The periodicity of one torsion thus depends on the conformation of the other torsions, and this circumstance clearly shows the coupling between torsions and the inapplicability of separable 1-D torsion methods. We found 7 structures for butanal, 7, 6 and 7, respectively, for butanoyl radical, 1-oxo-2-butyl radical and 4-oxo-2-butyl radical, and 46, 60, 72 and 76 structures for the corresponding TSs (R1–R4). All of these structures are included in eqn (6).
All harmonic vibrational frequencies calculated by the M08-HX/maug-cc-pVTZ method are scaled by a factor 0.976, which was previously determined as a value designed to give more accurate48 zero-point vibrational energies. This scale factor accounts both for the systematic difference between harmonic and actual zero-point energies and also for systematic errors in the electronic structure method. Since the zero-point vibrational energy is dominated by the high-frequency modes, using the scale factor effectively incorporates an estimate of the effect of the anharmonicity of high-frequency modes, but the optimized value of the scale factor is not much affected by the low-frequency modes since they make only a minor contribution to the zero-point vibration energy. Therefore, there is no significant issue of double counting the anharmonicity in including both the scale factor and the MS-T approximation, which primarily includes anharmonicity in low-frequency modes (the practical effect of using MS-T is that the low-frequency torsions are effectively replaced by classical partition functions using a reference potential16). The approach of scaling the frequency by an empirical constant is an approximation and it introduces some uncertainty, which is discussed elsewhere.48,49 Although methods for calculating anharmonic energy levels for polyatomic molecules from anharmonic potential energy functions are improving,50–52 as are path integral methods for calculating conformational–vibrational–rotation partition functions without calculating converged energy levels,53,54 actual calculations of converged vibrational partition functions for molecules with more than four atoms55–57 are still rare. Therefore, the procedures used here must be used without full tests of their accuracy for complex systems.
All density functional calculations were carried out with Gaussian0958 program. Molpro59 program was used for the CCSD(T)-F12 and MP2-F12 calculations.
Name convention | Abbreviation | Dihedral angle range (in deg)b |
---|---|---|
a The dihedral angles used for torsions are H1–O2–C3–C4, O2–C3–C4–C5 and C3–C4–C5–C6 for 1-butanol; H15–O14–C7–C5 and O14–C7–C5–H6 for 2-methyl-1-propanol; O2–C1–C4–C7 and C1–C4–C7–C10 for butanal. b (x, y) means x < τ < y. c This includes both −75 < τ < −30 and 30 < τ < 75. | ||
cis | C | 0 |
cis± | C± | (0, ±30) |
gauche± | G± | (±30, ±75)c |
g± | (±75, ±90) | |
anti± | a± | (±90, ±105) |
A± | (±105, ±150) | |
trans± | T± | (±150, ±180) |
trans | T | 180 |
Fig. 1 Global minimum structures of (a) butanal, (b) saddle point leading to the formation of butanoyl radical, (c) butanoyl radical, (d) saddle point leading to the formation of 1-oxo-2-butyl radical, (e) 1-oxo-2-butyl radical, (f) saddle point leading to the formation of 4-oxo-2-butyl radical, (g) 4-oxo-2-butyl radical and (h) saddle point leading to the formation of 4-oxo-1-butyl radical. |
The relative conformational energies of all of the structures are given in Tables S4 and S5 of the ESI.† The relative potential conformational energies of the structures of a given species lie within ranges of 1.20, 0.71, 1.92 and 1.13 kcal mol−1 for butanal and the product radicals (butanoyl radical, 1-oxo-2-butyl radical and 4-oxo-2-butyl radical), respectively. The small effective torsional barriers (1–8 kcal mol−1) of butanal when compared to the barrier heights (12–17 kcal mol−1) justifies the assumption of the MS-VTST theory that interconversion of conformers of the reactant is rapid compared to the rate of reaction. Note that any of the conformations of the reactant can give rise to any of the products, so this is a qualitatively different kind of reaction set than the ones envisioned by the Curtin–Hammett principle60 where each conformation is inconsistently assumed to lead to a different product.
The ranges of relative potential energy of the conformers of the TSs are larger than the ranges in the reactants and the products. For the TS that leads to the formation of butanoyl radical, the range is 2.58 kcal mol−1, while for the other three cases, the ranges are 4.78, 5.13 and 6.31 kcal mol−1, respectively (see Table S5 of the ESI†). Although the ranges are larger, there are also more low-energy conformers than for reactants or products. Thus there are respectively 40, 16, 12 and 12 conformers below 2 kcal mol−1 (with respect to their GMs) for the TSs for abstraction at the carbonyl, the α carbon, the β carbon and the γ carbon.
These two sets of benchmark-level calculations are presented in Table 2, where they are compared to the M08-HX/maug-cc-pVTZ calculations. The agreement is excellent with the mean unsigned deviation of the two benchmarks from each other for V‡f, V‡r and ΔU for the three reactions (nine quantities) being 0.40 kcal mol−1, and the mean unsigned deviation of M08-HX/maug-cc-pVTZ from CCSD(T)/CBS being only 0.58 kcal mol−1. We shall use M08-HX/maug-cc-pVTZ for all the remaining calculations in this paper. Note that the barrier heights calculated by the high-level methods in Table 2 are not the energy difference between the global minimum of reactant and the lowest-energy of saddle point. They are the energy difference between a representative conformer of reactant/product and a representative one of saddle point because the geometries used for validation were chosen before the complete conformational search for all the stationary points. The barrier heights calculated by the energy differences between the global minimum structure of reactant/product and the lowest-potential-energy saddle points are listed in Table 3.
Electronic model chemistry | V ‡f | V ‡r | ΔU | MUEb |
---|---|---|---|---|
a In the context of the present table, “classical” means zero-point-exclusive. b The mean unsigned errors are calculated with respect to CCSD(T)-F12a/jun-cc-pVTZ method, which is labeled as CCSD(T)/CBS. c The structures of reactant, product, and saddle points used are those listed in Tables S5 and S61 respectively. In particular, butanal is structure 6; butanoyl radical is structure 6; 1-oxo-2-butyl radical is structure 1; 4-oxo-2-butyl radical is 1; TS of R1 is structure 27; TS of R2 is structure 1; and TS of R3 is structure 3. d In order to perform a consistent comparison, the benchmark results in this table are both calculated at geometries obtained by the M08-HX/maug-cc-pVTZ method. | ||||
Abstraction of H atom from carbonyl-C to yield butanoyl radical (R1) | ||||
M08-HX/maug-cc-pVTZ | 12.05 | 9.46 | 2.59 | 0.96 |
jun–jund | 12.53 | 11.60 | 0.93 | 0.47 |
CCSD(T)/CBSd | 12.28 | 10.90 | 1.38 | 0.00 |
Abstraction of H atom from α-C to yield butanal-2-yl radical (R2) | ||||
M08-HX/maug-cc-pVTZ | 16.01 | 13.17 | 2.84 | 0.34 |
jun–jund | 16.86 | 13.41 | 2.45 | 0.33 |
CCSD(T)/CBSd | 16.52 | 13.54 | 2.98 | 0.00 |
Abstraction of H atom from β-C to yield butanal-2-yl radical (R3) | ||||
M08-HX/maug-cc-pVTZ | 17.06 | 5.28 | 11.78 | 0.43 |
jun–jund | 16.23 | 4.58 | 11.65 | 0.41 |
CCSD(T)/CBSd | 16.84 | 4.63 | 12.21 | 0.00 |
Reaction | V ‡f | V ‡r | ΔU |
---|---|---|---|
R1 | 12.13 | 9.06 | 3.07 |
R2 | 17.20 | 13.17 | 4.03 |
R3 | 17.93 | 4.95 | 12.98 |
R4 | 19.67 |
(12) |
Table 4 presents the multi-structural anharmonicity factors of the reactants, the products, the transition states, and the reactions as functions of temperature. The table shows that FχMS-T values for reactants and products usually pass through a maximum as a function of temperature.
T/K | Multi-structural anharmonicity factors | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
F RMS-T | F P1MS-T | F P2MS-T | F P3MS-T | F ‡,1MS-T | F ‡,2MS-T | F ‡,3MS-T | F MS-Tf,R1 | F MS-Tr,R1 | F MS-Tf,R2 | F MS-Tr,R2 | F MS-Tf,R3 | F MS-Tr,R3 | F MS-Tf,R4 | ||
a P1: butanoyl radical, P2: 1-oxo-2-butyl radical, P3: 4-oxo-2-butyl radical. b , , . | |||||||||||||||
200 | 4.76 | 10.02 | 2.78 | 1.92 | 2.08 | 28.97 | 4.08 | 6.93 | 6.09 | 1.39 | 0.86 | 0.70 | 1.46 | 1.73 | 0.53 |
300 | 6.62 | 12.07 | 3.26 | 2.57 | 2.14 | 53.15 | 10.48 | 13.29 | 8.07 | 2.08 | 1.61 | 1.53 | 2.03 | 2.45 | 0.62 |
400 | 8.64 | 13.47 | 3.65 | 3.03 | 2.20 | 79.81 | 23.58 | 29.18 | 9.24 | 2.69 | 2.73 | 2.93 | 3.38 | 4.37 | 1.01 |
600 | 12.02 | 14.96 | 4.18 | 3.44 | 2.30 | 125.07 | 65.89 | 104.51 | 10.41 | 3.64 | 5.48 | 6.86 | 8.67 | 13.17 | 2.77 |
1000 | 15.22 | 15.01 | 4.59 | 3.27 | 2.35 | 169.82 | 173.22 | 353.45 | 11.16 | 4.82 | 11.38 | 16.11 | 23.22 | 46.02 | 7.94 |
1500 | 15.35 | 13.27 | 4.50 | 2.68 | 2.28 | 168.51 | 274.84 | 572.43 | 10.98 | 5.57 | 17.90 | 26.77 | 37.28 | 93.53 | 13.30 |
2400 | 12.82 | 10.00 | 3.88 | 1.84 | 2.09 | 123.97 | 326.38 | 599.79 | 9.67 | 5.93 | 25.46 | 40.28 | 46.79 | 155.81 | 17.57 |
The rate of change of FMS-T(T) with temperature increases in the order R1 < R2 < R3. The trend in the multi-structural effect can be explained considering the number of structures obtained for the TS, which also follows the above order, i.e., R1 (46 structures) < R2 (60 structures) < R3 (72 structures). This is consistent with eqn (6), where the ratio contains QMS-T‡,con-rovib(T) in the numerator, and this partition function involves a sum over all the structures of the TS. The multi-structural anharmonicity factors decrease after a certain temperature because the torsional potential corrections (Zj and fj,τ in eqn (7)) play a more important role than the multiple structure effect at high temperature. Examination of Table 4 shows that multi-structural anharmonicity is important for product ratios as well as for overall reaction rates.
When a molecule has multiple conformational structures, the often used approximation is to base thermodynamics and kinetics calculations on the global minimum. The global minimum is often the most important structure at low temperature; however, other low-energy structures could also be important,61 and even higher-energy structures can be important at high temperature or even at low temperature when one considers entropy as well as energy. It is interesting to examine this approximation by using the complex reactions of the present study. Fig. 2 plots, for each conformational structure, the contribution to the rotational–vibrational partition function of the species (including both stable species and transition states) normalized to that of the global-minimum contribution of that species. The purpose of this figure is to show the relative contributions to the partition function changes due to structural changes; therefore only one structure of a pair of mirror images is presented in Fig. 2 (e.g., butanal has 4 structures shown in Fig. 2; note that our definition of the global-minimum's contribution to the partition function has a contribution from only one structure even when global minimum structure is one of a pair of mirror images). The figure also shows (in blue, with the ordinate scale at the right) relative energies. The partition functions are plotted for 200 K and 1000 K. At 200 K, the partition function of butanal is dominated by the three lowest-energy structures (see Table S4 in the ESI†); however, the contribution from the global minimum is smaller than that from the third-lowest energy structure even at such a low temperature. At 1000 K, the higher-energy structures of butanal become more important, and the contribution from the global minimum is the smallest of all the structures. A similar trend is also found for the transition states of the three reactions, as shown in subplots (b), (c) and (d). For example, consider subplot (b) for the abstraction of H from the carbonyl C. Structure 19 has a potential energy 0.66 kcal mol−1 higher than the GM (see Table S5†), but its contribution is a factor of 2.2 higher at 200 K and 5.2 higher at 1000 K.
Fig. 2 Rotational–vibrational partition function normalized to that of global minimum for each conformational structure with torsional anharmonicity as well as relative energy. The left vertical axis is the partition function normalized to the contribution of the lowest-energy structure; the right vertical axis is relative energy, and the first structure of each plot is the global minimum. Subplot (a) shows structures 1, 3, 4 and 6 for butanal. Subplot (b) shows structures 1, 3, …, 45 for the transition state for abstraction of H by HO2˙ from the carbonyl-C of butanal. Subplot (c) shows structures 1, 3, …, 59 for the transition state for abstraction of H by HO2˙ from the α-C of butanal. Subplot (d) shows structures 1, 3, …, 71 for the transition state for abstraction of H by HO2˙ from the β-C of butanal. |
The results show that the approximation of using the global minimum is generally not valid at high temperature, and sometimes it is not even a good approximation at low temperature. The reason for this is that high-energy structures usually have more floppy vibrational modes such that entropic contributions make them dominant at high temperature where entropy effects overcome the effect of the Boltzmann factor. An interesting observation made in the study of metal nanoparticles62 is that the lowest-energy structure is sometimes a highly symmetric structure with a small contribution to the conformational partition function; this is another example of where higher-energy structures tend to have higher entropy. Although it is well known that higher-energy structures become more important as the temperature is raised, the higher-energy structures are nevertheless ignored in many research articles dealing with kinetics, and the quantitative effect of including higher-energy structures has not been widely studied in the kinetics context.
The HO2 radical only has one conformational structure and no torsion, therefore the multi-structural anharmonicity factor for HO2 radical is 1.
Table 5 shows that reaction R4 has the smallest rates based on the conventional transition state theory using the MS-T partition functions (a table with more temperatures is given in the ESI as Table S13†). The contribution of R4 to total rate is less than 1% under 1000 K and less than 7% under 2400 K. Therefore in the rest of the paper, we will only discuss the rate constants for R1–R3, and for these reactions we will use a higher level of dynamics, in particular the MS-CVT/SCT method.
T/K | R1 | R2 | R3 | R4 |
---|---|---|---|---|
200 | 3.6 × 10−25 | 5.3 × 10−32 | 4.0 × 10−32 | 2.5 × 10−34 |
300 | 4.7 × 10−21 | 4.9 × 10−26 | 3.5 × 10−26 | 9.0 × 10−28 |
600 | 1.5 × 10−16 | 2.0 × 10−19 | 2.4 × 10−19 | 3.0 × 10−20 |
1000 | 2.1 × 10−14 | 2.6 × 10−16 | 4.8 × 10−16 | 1.1 × 10−16 |
1500 | 4.1 × 10−13 | 1.8 × 10−14 | 3.7 × 10−14 | 1.2 × 10−14 |
2400 | 5.9 × 10−12 | 7.6 × 10−13 | 1.5 × 10−12 | 6.4 × 10−13 |
For the generalized transition states studied in this article, there are many choices for a set of non-redundant internal coordinates to describe vibrations of the system. Choice of a set of non-redundant internal coordinates is crucial to obtain physically meaningful frequencies of nonstationary points along reaction path. For instance, the four atoms 1, 2, 5 and 16 (see Fig. 1(d)) become planar during part of the reaction path of reaction R2 (s = −0.450 to −1.125 Å); in this case, one need to choose two angles and one improper torsion for these four atoms instead of choosing three angles which can only be non-redundant set when the four atoms are not planar.
Fig. 3 Forward and reverse rate constants obtained by the MS-CVT/SCT method for the H-atom abstraction by ˙O2H (a) from the carbonyl-C of butanal to form butanoyl radical, (b) from the α-C of butanal to form 1-oxo-2-butyl radical, and (c) from the β-C of butanal to form 4-oxo-2-butyl radical. In each of these reactions, hydrogen peroxide is also produced as the second product. |
T/K | R1 | R2 | R3 |
---|---|---|---|
200 | 2.86 × 10−21 | 9.85 × 10−26 | 1.15 × 10−29 |
250 | 3.94 × 10−20 | 3.09 × 10−24 | 6.30 × 10−27 |
298.15 | 2.84 × 10−19 | 4.84 × 10−23 | 4.91 × 10−25 |
300 | 3.04 × 10−19 | 5.33 × 10−23 | 5.68 × 10−25 |
400 | 6.80 × 10−18 | 4.28 × 10−21 | 2.97 × 10−22 |
500 | 6.71 × 10−17 | 1.05 × 10−19 | 2.09 × 10−20 |
600 | 3.90 × 10−16 | 1.21 × 10−18 | 4.67 × 10−19 |
800 | 4.96 × 10−15 | 4.10 × 10−17 | 3.20 × 10−17 |
1000 | 2.90 × 10−14 | 4.77 × 10−16 | 5.14 × 10−16 |
1300 | 1.84 × 10−13 | 6.28 × 10−15 | 8.21 × 10−15 |
1500 | 4.63 × 10−13 | 2.23 × 10−14 | 3.05 × 10−14 |
1800 | 1.33 × 10−12 | 9.79 × 10−14 | 1.36 × 10−13 |
2000 | 2.32 × 10−12 | 2.16 × 10−13 | 2.97 × 10−13 |
2400 | 5.67 × 10−12 | 7.62 × 10−13 | 1.01 × 10−12 |
The forward MS-CVT/SCT rate constants are fitted with the four-parameter expressions proposed by Zheng and Truhlar87
(13) |
Because the reverse reactions are exothermic, we used the four-parameter expression in ref. 25 so that the rate constant is finite at 0 K.
(14) |
Reactions | Directions | Fitting parameters | |||
---|---|---|---|---|---|
A | T 0 | n | E | ||
a Eqn (13) is used for the forward reactions, and eqn (14) is used for the reverse reactions. b Units for A, T0 and E are cm3 molecule−1 s−1, K, and kcal mol−1, respectively. The parameter n is unitless. | |||||
R1 | Forward | 1.968 × 10−15 | 195.48 | 4.387 | 4.546 |
Reverse | 4.347 × 10−16 | 298.90 | 4.105 | 4.029 | |
R2 | Forward | 1.680 × 10−17 | 203.79 | 5.942 | 6.604 |
Reverse | 1.027 × 10−17 | 270.29 | 5.256 | 6.137 | |
R3 | Forward | 2.071 × 10−16 | 136.75 | 5.226 | 9.791 |
Reverse | 1.059 × 10−15 | 398.17 | 3.179 | 5.396 |
Because the reverse reaction barrier heights are smaller than the forward reaction barrier heights for all three reactions (see Table 3), the reverse rate constants are much larger than the forward reaction rate constants at low temperatures. However, this trend is reversed at high temperature, i.e., forward reaction rates become larger at high temperatures. Here we define the temperature at which the forward and reverse reactions have the same rate, i.e., the temperature at which the equilibrium constant is 1, as the isoconcentration temperature. The MS method predicts a quite different isoconcentration temperature than the SS method. For example, the isoconcentration temperature is 720 K in the MS calculation, while SS one gives 1130 K. Therefore, the improvement by the MS method is not only in the absolute rate constants, but also in their temperature dependence and in equilibrium constants.
The Arrhenius activation energy is defined as the negative value of the slope of the curve ln k vs. 1/kBT.72 The activation energy derived from eqn (13) and (14) are respectively25,71
(15) |
(16) |
Table 8 lists the activation energies for the three reactions (forward and reverse) by using the SS-CVT/SCT and MS-CVT/SCT methods. The activation energies are temperature dependent because the curves shown in Fig. 3 have large curvature. The large curvatures of the Arrhenius plots are enhanced by two features of the reaction: (i) tunneling contributions mainly impact the temperature dependence at low temperatures, and (ii) the multiple-structure and torsional anharmonicity have large effects at high temperatures. For all temperatures listed in Table 7 the total effect of multi-structure and torsional anharmonicity increase the reaction rates for all three reactions in the forward and reverse directions except at 200 K, where the MS method lowers the reaction rate for reaction R2 by factors of 0.9 and 0.7 for the forward and reverse reactions respectively. However, Table 7 shows that activation energies given by the MS method are often larger than those given by the SS method. The physical interpretation of this is that the Arrhenius activation energy equals the average energy of reacting pairs of reactants minus the average energy of all pairs of reactants;88 and inclusion of multi-structural anharmonicity changes these averages.
Forward | Reverse | |||
---|---|---|---|---|
T/K | SS | MS | SS | MS |
Reaction R1: CH 3 CH 2 CH 2 CHO + ˙O 2 H → CH 3 CH 2 CH 2 C˙O + H 2 O 2 | ||||
200 | 3.88 | 4.12 | 1.04 | 1.33 |
300 | 6.47 | 6.82 | 2.67 | 3.26 |
400 | 8.28 | 8.64 | 4.35 | 5.08 |
600 | 10.73 | 10.97 | 7.01 | 7.79 |
1000 | 14.46 | 14.42 | 10.64 | 11.40 |
1500 | 18.90 | 18.54 | 14.47 | 15.27 |
2400 | 27.03 | 26.11 | 21.29 | 22.23 |
Reaction R2: CH 3 CH 2 CH 2 CHO + ˙O 2 H → CH 3 CH 2 C˙HCHO + H 2 O 2 | ||||
200 | 5.07 | 5.54 | 1.73 | 2.33 |
300 | 8.36 | 9.41 | 4.06 | 5.37 |
400 | 10.57 | 12.05 | 6.17 | 7.97 |
600 | 13.44 | 15.39 | 9.20 | 11.52 |
1000 | 17.73 | 20.12 | 13.29 | 16.04 |
1500 | 22.88 | 25.69 | 17.76 | 20.92 |
2400 | 32.33 | 35.91 | 25.86 | 29.79 |
Reaction R3: CH 3 CH 2 CH 2 CHO + ˙O 2 H → CH 3 C˙HCH 2 CHO + H 2 O 2 | ||||
200 | 11.28 | 10.72 | 0.49 | 0.65 |
300 | 13.45 | 14.55 | 1.22 | 2.15 |
400 | 14.55 | 16.45 | 2.12 | 3.99 |
600 | 16.19 | 18.65 | 3.90 | 7.19 |
1000 | 19.53 | 22.22 | 6.89 | 11.10 |
1500 | 24.01 | 26.88 | 10.21 | 14.37 |
2400 | 32.47 | 35.73 | 16.13 | 19.67 |
The percentage yields of products R1 and R2 are plotted in Fig. 4(a). Because the percentage yield of R3 is close to that of R2 on the scale of Fig. 4(a), it is not plotted in Fig. 4(a) for better visualization. In the temperature range from 200 K to 2400 K, R1 is the dominant product. For instance, the percentage yield of R1 as calculated by the MS-CVT/SCT method is above 90% at temperatures below 1500 K. At high temperature, the difference between the results obtained by the MS-CVT/SCT method and the SS-CVT/SCT method becomes more noticeable on the scale of Fig. 4(a); for instance, at T = 2400 K, the percentage yield of R1 is 92 by MS-CVT/SCT and 76 by SS-CVT/SCT.
Fig. 4 (a) Product branching fractions of the forward reactions R1 and R2 calculated by the SS-CVT/SCT (denoted as SS) and MS-CVT/SCT (denoted as MS) methods. (b) Product branching fraction of the forward reactions R2 and R3 calculated by the SS-CVT/SCT (denoted as SS) and MS-CVT/SCT (denoted as MS) methods. |
Fig. 4(b) shows the yields of R2 and R3 in the temperature range of 1000–2400 K. By only considering the global minimum structure in the rate calculations, i.e., by carrying out the calculations with SS-CVT/SCT, the yield of R2 is higher than that of R3. In the other words, the reactivity of the reaction sites of butanal would be predicted to be
carbonyl-C > α-C > β-C |
This order of the reactivity is consistent with the forward barrier heights of these reactions as shown in Table 3. By considering contributions of all conformational structures to the reaction rate, the order of the reactivity below 1000 K remains the same as inferred from the global minima. However, the order of reactivity is changed for temperatures above 1000 K to
carbonyl-C > β-C > α-C |
This shows that the reactivity of different channels depends not only on the classical barrier heights, but also on contributions of conformational structures to partition functions. Therefore reactivity that is inferred only by using classical barrier heights without considering temperature dependence is questionable; unfortunately this kind of basis for conclusions about reactivity appears frequently in the literature.
Fig. 5 plots the product ratios calculated by the SS-CVT/SCT and MS-CVT/SCT methods. Here we define the product ratios as [P1]/[P2], [P1]/[P3] and [P3]/[P2] respectively, where [Pi] (i = 1, 2, or 3) is the concentration of product of forward reactions R1–R3. Fig. 5 shows that the multi-structural torsional anharmonicity increases the product ratio [P1]/[P2] by a factor of 7 at 200 K, and decreases the ratio by a factor of 0.3 at 2400 K. The effects on product ratios due to the multi-structural torsional anharmonicity are significant both at low and high temperatures.
Fig. 5 Percentage yields calculated by the SS-CVT/SCT (denoted as SS) and MS-CVT/SCT (denoted as MS) methods. For the SS calculations, the structure chosen is always the global minimum structure for reactants and products, that is, the structure with the lowest potential energy, and the structure chosen for the saddle point is always the structure with the lowest ground-state energy. Since the multi-structural anharmonicity effect is the deviation of these curves from unity, we denote unity by a thin dotted horizontal line in the figure. |
Fig. 6 shows the SCT transmission coefficients for R1, R2 and R3, and we tabulate this quantity for a range of temperature in Table S12 of the ESI.† The curves and the table reveal that all these reactions have very large tunneling contributions at temperatures below 600 K, especially reaction R2. The latter is explained by noting that reaction R2 has large barrier heights for both forward and reverse reactions, and also it has a narrow barrier in the vibrationally adiabatically potential energy curve (see Fig. S1 in ESI†).
Fig. 6 SCT transmission coefficients for reactions R1–R3 as function of reciprocal temperature. |
The effect of multi-structural torsional anharmonicity on product yields is quantitatively similar to the effect on branching ratios. For example, at 298 K, the yield of P2 decreases from 0.086% to 0.017%—a factor of 5.0 decrease. In contrast, at 2400 K the P2 yield is increased from 4.7% to 10.2%—a factor of 2.2 in the other direction, and the P3 yield increases from 3.4% to 13.6%, a factor of 4.0. The effects are largest at low temperature; for example the P2 and P3 yields decrease by factors of 4.0 and 7.0, respectively.
Footnote |
† Electronic supplementary information (ESI) available: Optimized Cartesian coordinates (in Å) of all the structures of butanal (reactant), butanoyl radical, 1-oxo-2-butyl radical, 4-oxo-2-butyl radical (product radicals), hydroperoxyl radical, hydrogen peroxide, and six lowest-energy structures of the transition states leading to the formation of butanoyl radical, 1-oxo-2-butyl radical, 4-oxo-2-butyl radical and 4-oxo-1-butyl radical; relative conformational energies and local periodicities; conformational–rotational–vibrational partition functions and anharmonicity factors; more temperatures for Tables 2 and 3; and details of the density functional validations, the anharmonicity calculations, and the reaction paths. See DOI: 10.1039/c2sc21090h |
This journal is © The Royal Society of Chemistry 2013 |