Filippo
Zorzi
ab,
Emil Alstrup
Jensen
cd,
Murat
Serhatlioglu
d,
Silvio
Bonfadini
a,
Morten Hanefeld
Dziegiel
ce,
Luigino
Criante
*a and
Anders
Kristensen
d
aCenter for Nano Science and Technology, Istituto Italiano di Tecnologia, Via Rubattino, 20134, Milan, Italy. E-mail: luigino.criante@iit.it
bDepartment of Physics, Politecnico di Milano, Piazza Leonardo da Vinci, 32, 20133, Milano, Italy
cDepartment of Clinical Immunology, Copenhagen University Hospital, Blegdamsvej 9, Section A DK-2100 Copenhagen Ø, Denmark
dDepartment of Health Technology, Danmarks Tekniske Universitet, Ørsteds Plads, Building 345C DK-2800 Kgs. Lyngby, Denmark
eDepartment of Clinical Medicine, Københavns Universitet, Blegdamsvej 3B 33.5, Section A DK-2200 Copenhagen, Denmark
First published on 29th November 2024
This work introduces a high-throughput setup for Raman analysis of various flowing fluids, both transparent and non-transparent. The setup employs a microfluidic cell, used with an external optical setup, to control the sample flow's position and dimensions via 3-dimensional hydrodynamic focusing. This approach, in contrast to the prevalent use of fused silica capillaries, reduces the risk of sample photodegradation and boosts measurement efficiency, enhancing overall system throughput. The microfluidic cell has been further evolved to laminate two distinct flows from different samples in parallel. Using line excitation, both samples can be simultaneously excited without moving parts, further increasing throughput. This setup also enables real-time monitoring of phenomena like mixing or potential reactions between the two fluids. This development could significantly advance the creation of highly sensitive, high-throughput sensors for fluid composition analysis.
With its unique analysis characteristics, RS has found extensive use across various fields. Since the seminal 1972 study on hemoglobin and erythrocytes,1 it has been utilized in bioanalytics and blood analysis. It has also proven effective in identifying numerous disease-related biomarkers.2–4 However, its clinical applications has been significantly limited by two major drawbacks. Firstly, many studies involving RS on biological samples necessitate time-consuming sample preparation of about 40–60 minutes. Secondly, the inherent weakness of the Stokes component in spontaneous RS requires an extended integration time to gather an adequate signal. Considering the Raman scattering efficiency, it is estimated that only one in every 108 photons undergoes inelastic scattering during its interaction with matter.5–7 For single-cell analysis, common methods include smearing the sample on a glass substrate8–10 and optical trapping.11,12 However, these methods necessitate lengthy preparation times due to steps like pre-treatment and sample centrifugation, slowing the overall process. Additionally, signal collection from a large number of cells is time-consuming.
In addition, when using static samples, prolonged exposure times can cause photodegradation or thermal damage, irreversibly affecting the measurement. To mitigate this, one typical solution is to use a source in the NIR region (usually 785 nm) for optical excitation in Raman analysis. This range offers low light absorption for biological samples, significantly reducing potential radiation damage. However, as the Raman signal intensity is proportional to 1/λ4,13,14 using these wavelengths results in a lower signal compared to visible wavelengths. Consequently, longer integration times are required to achieve a good signal-to-noise ratio, leading to low device throughput. Performing Raman spectroscopy on flowing samples is another potential solution to avoid photodegradation.
Other optical detection methods for flowing cells in a fluidic unit rely on the fluorescence emitted by fluorophores within the cells and/or scattering of light at different angles as the excitation light interacts with the cells being analyzed.15,16 Although these methods generally provide significantly greater intensity than the Raman emission (typically due to fluorophores with very strong emission or scattering from metallic labels), they offer limited information about the samples' molecular fingerprint. Fluorescence intensity is proportional to the amount of fluorophore entering or being attached to the cell. Light scattering at different angles is mainly related to geometrical parameters such as cell size, morphology, and roughness;17 Metallic labels and fluorophores are costly and could destroy cell integrity, and the sample is often not reusable. In addition, only Raman spectroscopy can provide complete information about the sample's chemical composition based on molecular vibrational modes, giving a molecular fingerprint. These factors make Raman spectroscopy unparalleled in the quantity and quality of information it can provide about a given sample in a non-invasive and label-free manner. When examining whole blood, the prevalent method typically involves using fused silica capillaries as “sample holder”.18–23 Given the high viscosity of blood, a capillary diameter of at least 100 μm is necessary to prevent clogging. However, due to the pump laser beam's typical focal spot size (up to tens of microns), only a minuscule percentage of the total sample can be analyzed. Furthermore, the pump beam's penetration depth is restricted by the scattering caused by blood's corpuscular nature. Consequently, even if the sample is scanned with moving parts to increase the analysis area, the measurement is confined to the sample portion near the capillary's glass walls. This situation presents a dual disadvantage: firstly, the useful Raman signal may not be representative as it originates from the sample part experiencing the highest shear stress due to the gradient of the fluid's parabolic velocity profile; secondly, the substrate's background signal is amplified. This unfortunate combination of factors negatively impacts the signal-to-noise ratio, occasionally rendering the measurement unfeasible.
In recent years, various flow cytometers have been proposed in the literature capable of acquiring Raman spectra of flowing single cells.24–27 However these devices, due to the brief interaction between cells and light, employ coherent Raman scattering techniques (such as CARS or SERS) that necessitate intricate optical setups.
These challenges significantly restrict the applicability of Raman spectroscopy in the clinic, where the ability to rapidly analyze a sample is often crucial.
In this paper, we introduce an innovative lab-on-a-chip platform that improves flow sample analysis throughput, especially for corpuscular and non-transparent sample such as blood, by enabling simultaneous multi-stream Raman spectroscopy. Leveraging the fluid control capabilities of a 3D microfluidic geometry, we can conduct quick and efficient Raman measurements of flowing blood with virtually no sample preparation time, using a visible excitation wavelength.
Fig. 2 a) Raman spectra obtained using isopropanol (IPA) in the sample inlet and MilliQ water in the buffer inlet, taken in positions A and B shown in Fig. 2b, with 532 nm as excitation wavelength and integration time of 1 s. The intensity of two peaks was tracked for each position: the IPA peak at 819 cm−1 and the SiO2 peak at 465 cm−1. b) Raman intensity maps of channel cross-section with focused isopropanol. It is possible to change the size of the focused stream by changing the pressure ratio between the sample inlet and the buffer inlet and match it with the voxel size of the objective lens. |
By reducing the sample flow diameter by roughly a factor of ten, the flow velocity significantly increases compared to the capillary. The velocity at the interface between the two fluids (sample and buffer) is typically uniform, minimizing shear stress, and its profile at the center is nearly constant. This results in cells being less affected by the wall lift force, which otherwise pushes them away from the wall, creating a cell concentration gradient that hampers measurement efficiency. The increased flow speed enables signal collection from a larger number of cells within the same measurement integration time, enhancing the device's throughput compared to state-of-the-art methods. Additionally, the interaction time between the single cell and the laser beam is reduced, allowing for a more powerful Raman pump signal without triggering photodegradation. The lower energy transferred to the cell and the effective heat extraction from the measurement area by intrinsic fluid dynamic mechanisms shift the damage threshold to higher values. Raman excitation of whole blood with green light becomes possible, improving the intensity of the collected signal since Raman signal intensity is proportional to 1/λ4. This enables a good signal-to-noise ratio even with short integration times, down to less than 1 s. Furthermore, our platform, thanks to the innovative chip manufacturing process, allows for sample stream multiplexing, enabling simultaneous analysis of more than one blood sample. When coupled with an optical system involving line excitation and an imaging spectrometer, it allows for the simultaneous collection of several Raman spectra without the need for moving parts inside the setup. An analysis throughput of more than one hundred whole blood samples per hour can potentially be achieved.
The second harmonic of an ultrashort pulsed laser (PHAROS PH2-10W, LightConversion) was used. Fabrication was achieved by focusing the laser beam with 420 nJ pulses through an objective (50× M Plano APO NIR, Mitutoyo) inside the fused silica substrate (Fused silica, FOCKtech). The substrate was placed on a high-precision, 3-axis air bearings stage (Fiber-Clide3D, Aerotech), controlled by a CAD-based software (SCA, Altechna). The stage speed was set to 1 mm s−1 when the laser beam was on, and 10 mm s−1 when the laser beam was off. The beam polarization was perpendicular to the writing direction to maximize the etching rate.34 Precise 3D geometries were written inside the substrate by moving the stage.
In the second step, the substrate is subjected to wet chemical etching to selectively remove the laser-modified parts in an aqueous 20% hydrofluoric acid solution at a controlled temperature of 35 °C. The etching rate in the laser-written parts of the glass increases to around 700 μm h−1, while the unwritten parts will etch at a lower rate of about 20 μm h−1. This selective glass removal enables the creation of 3D monolithic microfluidic circuits fully embedded within the fused silica substrate.35–37 The rigidity and inertness of fused silica allow for indefinite platform reuse following proper cleaning.
In order to optimize the performances of the microfluidic system, some useful expedients have been adopted in the design and assembly process (refer to ESI† S1).
Given that the Raman signal intensity is proportional to the analyte concentration,38,39 our platform can associate intensity with a specific number of molecules interrogated by the excitation beam for a set integration time. To test this, isopropanol at varying concentrations was used as a test analyte (Fig. 3). By maintaining a constant flow focusing rate, the flow size and position of the excitation beam, which was optimized to maximize signal collection, remained constant across all measurements. For each integration time, a spectrum was taken with the focused flow of IPA surrounded by water, followed by a spectrum with only water in the channel. After subtracting the two spectra, the intensity of the IPA peak corresponding to a Raman shift of 819 cm−1 was plotted. This enabled the creation of a calibration curve (Fig. 3b), associating a given isopropanol concentration with a specific signal intensity. Consequently, a useful signal down to a concentration of 13 μmol l−1 was obtained using an exposure time of 60 s.
This method is applicable to any fluid type including nontransparent or corpuscular fluids, without compromising measurement effectiveness. A comparison between the capillary and the microfluidic chip can be observed when using blood group A whole blood as analyte (Fig. 4a). In this case, the intensities of the fused silica peak at 465 cm−1 and a hemoglobin peak, at 1580 cm−1, were plotted (Fig. 4b). Due to blood's corpuscular nature, the penetration depth of the beam inside the capillary is limited to 15 μm, restricting measurement efficiency as only about 8% of the total volume flowing into the capillary can be interrogated. Additionally, measurements performed close to the wall always present significant background signal from the fused silica. Conversely, with the microfluidic chip, we can collect the signal from 100% of the blood volume flowing through the channel, virtually eliminating the fused silica's background noise (Fig. 4c). This geometry allows each cell flowing in the channel to be interrogated by the pump beam, enhancing measurement effectiveness. This is particularly crucial considering that some diseases are associated with the presence of rare cells within the blood.40,41
Measurements are made where the fluid flow is focused, specifically in the center of the microchannel. Given the laminar regime of the fluid flow in the channel, its velocity profile exhibits a parabolic pattern, with the minimum velocity near the wall and the maximum at the channel center. This results in a minimal (approximately zero) velocity gradient where the sample fluid is focused, leading to fairly uniform cell velocity. This is crucial as it ensures all cells are scanned by the beam for similar time intervals, yielding signals of comparable intensity. As shear stress on the cells is directly proportional to the velocity gradient, it is also minimal. Unlike in a capillary, the lift force on the cells is zero and no cell concentration gradient forms in the analysis zone, enhancing the robustness of the measurement. A further advantage of this geometry is minimal sample consumption during the measurements. The flow rate inside the sample and buffer channels was measured for different focusing sizes using filtered isopropanol. With a cross-section of approximately 20 × 20 μm, the flow rate inside the sample channel reached 2 μl min−1, while the buffer inlet was 310 μl min−1. The spectra collection for these maps took about 45 minutes in total, implying that these complete scans were conducted using a total sample volume of 100 μl.
The cell flow speed in the channel is significantly higher compared to a capillary. For a flow rate of 2 μl min−1 and a cross-section of 20 × 20 μm, the average speed is 8.2 cm s−1, marking an increase by a factor of 19.3 compared to a capillary with a diameter of 100 μm. As previously mentioned, the velocity profile is nearly uniform. The volume of blood analyzed in a given time interval increases by the same factor. Specifically, under the same conditions, the volume changes from 0.015 μl analyzed per minute with the capillary to μl analyzed with the lab-on-chip. The number of cells analyzed per minute increases from 75 × 103 with the capillary to 1.5 × 106 with the hydrodynamic focusing chip (additional details in the ESI† S2). Despite a shorter interaction time between cells and the excitation beam yielding a weaker signal from individual cells, the increased number of cells analyzed per unit of time allows for signal collection averaged over a larger, and thus more statistically significant, sample. Reducing the interaction time between cells and the beam allows for an increase in laser power without causing cell photodegradation. To quantify this increase, power measurements were conducted with two different device configurations using the same blood sample. Excitation was consistently performed with a 532 nm CW laser. However, by employing neutral density filters with varying absorption (THORLABS, NDK01), the laser intensity was adjusted from 0.8 kW cm−2 to 1675 kW cm−2. The Raman signal was collected using a 50× objective with an integration time of 1 s. The amplitude of two different peaks was then tracked and plotted as a function of laser intensity.
The use of the lab-on-a-chip allows for a six-fold increase in excitation intensity without cell photodegradation (up to 265 kW cm−2), and an overall signal increase by a factor of 1.5 (see ESI† S3). Unlike the capillary, exceeding the density power photodegradation threshold does not alter the spectrum, and degraded or burned cells do not tend to adhere to the channel's edge, an event that would necessitate thorough device cleaning and compromise the measurement. Instead, these cells are transported away from the analysis zone, simplifying device usage. This configuration offers a dual advantage: it not only enables measurements on a larger number of cells within the same measurement time but also allows for higher power measurements without risking sample damage due to lower photodegradation, ultimately enabling faster measurements with integration times shorter than 1 s.
While no significant structural damage to the red blood cells is observable in the channel, spectra reveal an increased degree of deoxygenation as power increases. Even at low powers, visible Raman excitation can initially trigger oxygen photo-dissociation from hemoglobin.42 The Raman peak intensity at 1547 cm−1 rises while the intensity at 1585 cm−1 falls, indicating a transition of Fe from a low-spin to a high-spin state. Owing to the shorter interaction time between cells and the beam in the channel compared to the capillary, the deoxygenation rate is much slower with increasing laser power, facilitating easier measurement control (see ESI† S3). The flow rate can be adjusted by the sheath and sample inlet pressure ratio, while keeping the size of the sample stream constant. This means that flow rate and laser power can be chosen in unison such that the state of the sample can be easily controlled (e.g. deoxygenation state), while maintaining a high throughput and favourable signal-to-noise ratio (see ESI† S4).
Line excitation offers another advantage, observable when analyzing the signal as a function of the y-coordinate of the CCD. As the y-axis of the CCD image represents the spatial extent of the excitation line, tracking the evolution of peaks of interest along the y-axis enables extraction of increased spatial resolution information about the analyzed fluid, compared to point excitation. Given that the field of view of the objective lens is 100 μm and occupies about 200 pixels on the CCD, this method achieves a spatial resolution in the excitation line direction of about 500 nm, close to the diffraction limit of the objective, proportional to λ/2n, with n being the refractive index of the material. Considering that the spot size of the 50× objective is 3 μm and sets the resolution limit, this method can enhance the spatial resolution six-fold compared to a point-by-point scan. Furthermore, this method allows for a scan with a single measurement without the need for moving parts, unlike a point-like spot which would require stage movement for the same scan. This method has several applications. By knowing the fluid velocity inside the channel and analyzing the profile evolution of different peaks along the channel length, it is possible to determine the diffusion constant of the fluid or its different components inside the buffer. This is particularly important for fluids like blood, which contains different components that can diffuse differently. When using different fluids, real-time monitoring of their reactions with each other and evaluation of the reaction speed are possible. Lastly, real-time observation of how two different fluids mix together is achievable.
After successfully testing the device with isopropanol and ethanol, it was then tested with non-transparent corpuscular fluids of interest. Specifically, the test was conducted with two different blood samples (AB− and O+ types) using PBS as a buffer. A good signal-to-noise ratio was still achieved even with this more complex fluid at short integration times of 1 second (see ESI† S5). It is possible to distinguish the signal from the two samples using point-like and line excitation configurations, thus paving the way to study diffusion or mixing applications between the two different samples. Having a good signal-to-noise ratio is crucial when developing a high-throughput blood typing protocol using Raman spectroscopy which may benefit from artificial intelligence when assessing the various parameters of the samples.
The continuous development of coherent Raman cytometry platforms will undoubtedly improve the obtainable throughput and enable single-cell analysis of several 100000 cells within a reasonable timeframe (hours). However, analysis at macro- and bulk scale requires sampling at a much higher rate, e.g. monitoring and controlling a range of bioprocesses in biotechnological production.43 The chip presented in this paper provides a novel method to analyze volumes at this scale.
The LoC geometry also facilitates Raman multiplexing due to its ease of fabrication. Indeed, multiple hydrofocuses can be created to laminate several liquids in parallel, significantly increasing the device's throughput. It has been demonstrated that signals from different samples are easily distinguishable even in this case. Furthermore, with line laser excitation, by examining the signal intensity at different positions on the spectrometer's CCD camera, it is possible to simultaneously collect signals from different samples without the need for moving parts in the optical setup. The setup has also been tested with non-transparent samples of interest (whole blood from different blood groups), and it was observed that it's possible to acquire Raman spectra with a good signal-to-noise ratio even with relatively short integration times (below 1 second).
The setup described in this work extends beyond merely collecting Raman spectra from different samples. By analyzing the signal intensity along the y-coordinate of the CCD image, it's possible to monitor other significant parameters of the analytes in real-time. For instance, their diffusion within the channel, their mixing, or any reactions occurring between the two samples under examination (or their reactions with the buffer) can be observed.
We believe that the promising results obtained with this setup could pave the way for high-throughput devices for Raman analysis of blood samples in the future. This would allow for easy and rapid access to numerous clinically relevant blood traits, potentially improving the quality of transfusion medicine and enhancing the preventive capacity for diseases related to blood parameters.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4lc00586d |
This journal is © The Royal Society of Chemistry 2025 |