Adel S. El-Azab*,
Alaa A.-M. Abdel-Aziz
,
Ahmed H. Bakheit
,
Hamad M. Alkahtani
,
Ahmad J. Obaidullah
,
Mohamed M. Hefnawy
and
Ibrahim A. Al-Suwaidan
Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia. E-mail: adelazab@ksu.edu.sa
First published on 6th January 2025
We tested newly synthesized compounds 1–13 on 59 cancer cell lines and found that acylhydrazones 5, 6, 7, 9, and 12 showed the best in vitro cytotoxic activity. They stopped the mean growth percentage (MG%) by an average of 23.5, 55.2, 89.4, 88.5, and 88.4%, respectively. Compound 5 was subjected to NCI tests at five-dose dilutions on 59 tumor cells. It is more effective in killing tumor cells than gefitinib (mean GI50: 7.7 μM) and erlotinib (mean GI50: 2.1 μM). Its mean GI50 value was 1.0 μM, and its LC50 value was over 100 μM, whereas gefitinib's was 95.6 μM and erlotinib's was 14.3 μM. Its TGI was 89.2 μM, while those drugs were 66.3 and 14.3 μM, respectively. We evaluated acylhydrazones 5, 6, 7, 9, and 12 for dose-dependent enzymatic inhibition of EGFR, HER2, and CDK9 kinases to study the mechanism of the in vitro cytotoxicity. With IC50 values of 84.4 and 51.5 nM, compounds 5 and 6 are the most potent EGFR inhibitor analogs, similar to Gefitinib (IC50 of 53.1 nM). Compounds 5, 6, and 12 blocked HER2 like Gefitinib did (IC50 = 38.8 nM); their IC50 values were 53.9, 44.1, and 110.6, respectively. Compounds 5, 6, and 7 had IC50 values of 146.9, 96.1, and 155.4 nM, which means they blocked CDK9 activity almost as well as Dinaciclib (IC50 53.1 nM). Flow cytometers count the amount of DNA in T-47D and MOLT4 cells treated with compounds 5 and 6. The IC50 value of compound 5 increases from 6.6% for the DMSO/T-47D control to 26.3% in the G2-M phase, while compound 6 goes from 61.4 for the DMSO/MOLT4 control to 89.0% in the G1 phase. The tested compounds cause early death, ranging from 0.4% and 0.6% (a DMSO control sample) to 9.3% and 19.2%, respectively. Derivatives 5 and 6 also increased late death from 0.1 to 14.8% and 12.6 to 0.3%, respectively, favoring the apoptotic route over the necrotic one for cell death to 50.5 μM. When tested for cell death against the standard WI-38 fibroblast cell line, imines 5 and 6 were less toxic than doxorubicin.
![]() | ||
Fig. 3 The designed target quinazolinylhydrazone derivative (compounds 4–13) are based on the chemical structures of compounds I–XI. |
![]() | ||
Scheme 1 Synthesis of ester 2, acidhydrazide 3, acylhydrazones 4–13 based on quinazolines incorporating benzylulfonamide. |
Compound no. | PCE* | Cancer cell line assays (10.0 μM in one dose, GI %) | **MG% |
---|---|---|---|
a *Most sensitive cell lines PCE: positive cytotoxic effect is defined as the ratio between the number of cell lines with percentage growth inhibition of >10% and the total number of cell lines **: mean growth percent. | |||
1 | 4/59 | Non-small cell Lung (HOP-92, 14%), C.N.S. (SNB-75, 23%), and Renal (CAKI-1, 11%; UO-31, 19%) | 97.13 |
2 | 2/59 | CNS (SNB-75, 15%), and Renal (UO-31, 16%) | 100.32 |
3 | 0/59 | — | 104.42 |
4 | 9/59 | Non-Small Cell Lung (EKVX, 14%; NCI–H522, 18%), CNS (SNB-75, 13%), Melanoma (UACC-62, 11%), Renal (CAKI-1, 16%; UO-31, 21%), Breast (MCF-7, 14%; MDA-MB-231/ATCC, 12%; HS-578T, 11%) | 99.39 |
5 | 59/59 | Leukemia (CCRF-CEM, 90%; HL-60(TB), 120%; K-562, 94%, MOLT-4, 89%; RPMI-8226, 83%; SR, 90%), Non-Small Cell Lung (A549/ATCC, 71%; EKVX, 65%; HOP-62, 79%; HOP-92, 42%; NCI-H226, 69%; NCI-H23, 61%; NCI-H322M, 67%; NCI-H460, 94%; NCI-H522, 126%), Colon (COLO-205, 102%; HCC-2998, 80%; HCT-116, 79%; HCT-15, 53%; HT-29, 68%; KM-12, 85%; SW-620, 79%), CNS (SF-268, 82%; SF-295, 80%; SF-539; 72%; SNB-19, 59%; SNB-75, 62%; U-251, 76%), Melanoma (LOX IMVI, 99%; MALME-3M, 69%; M14, 96%; MDA-MB-435, 87%; SK-MEL-2, 90%; SK-MEL-28, 67%; SK-MEL-5, 95%; UACC-257, 87%; UACC-62, 94%), Ovarian (IGROV1, 74%; IGROV-3, 85%; IGROV-4, 88%; IGROV-5, 45%; OVCAR-8, 80%; NCI/ADR-RES, 13%; SK-OV-3, 79%), Renal (786-0, 68%; ACHN, 67%; CAKI-1, 69%; RXF 393, 58%; SN-12C, 68%; TK-10, 85%; UO-31, 54%), Prostate (PC-3, 51%; DU-145, 62%), Breast (MCF-7, 87%; MDA-MB-231/ATCC, 75%; HS-578T, 37%; BT-549, 67%; T-47D, 94%; MDA-MB-468, 110%). | 23.46 |
6 | 58/59 | Leukemia (CCRF-CEM, 77%; HL-60(TB), 60%; K-562, 64%, MOLT-4, 80%; RPMI-8226, 51%; SR, 76%), Non-Small Cell Lung (A549/ATCC, 31%; EKVX, 40%; HOP-62, 65%; HOP-92, 46%; NCI-H226, 43%; NCI-H23, 37%; NCI-H322M, 53%; NCI-H460, 51%; NCI-H522, 101%), Colon (COLO-205, 71%; HCC-2998, 50%; HCT-116, 58%; HCT-15, 25%; HT-29, 14%; KM-12, 61%; SW-620, 40%), CNS (SF-268, 62%; SF-295, 35%; SF-539; 46%; SNB-19, 45%; SNB-75, 15%; U-251, 57%), Melanoma (LOX IMVI, 84%; MALME-3M, 41%; M14, 58%; MDA-MB-435, 29%; SK-MEL-2, 64%; SK-MEL-28, 43%; SK-MEL-5, 42%; UACC-257, 30%; UACC-62, 62%), Ovarian (IGROV1, 38%; IGROV-3, 87%; IGROV-4, 60%; IGROV-5, 32%; OVCAR-8, 56%; SK-OV-3, 37%), Renal (786-0, 29%; ACHN, 28%; CAKI-1, 46%; RXF 393, 28%; SN-12C, 44%; TK-10, 47%; UO-31, 39%), Prostate (PC-3, 33%; DU-145, 28%), Breast (MCF-7, 50%; MDA-MB-231/ATCC, 70%; HS-578T, 29%; BT-549, 44%; T-47D, 67%; MDA-MB-468, 48%). | 55.22 |
7 | 29/59 | Leukemia (CCRF-CEM, 46%; HL-60(TB), 16%; K-562, 40%, MOLT-4, 36%; RPMI-8226, 56%; SR, 17%), Non-Small Cell Lung (A549/ATCC, 14%; HOP-62, 14%; NCI-H23, 16%; NCI-H522, 30%), Colon (HCT-15, 26%; KM-12, 11%), CNS (SF-268, 15%; SF-295, 23%; SNB-75, 18%), Melanoma (LOX IMVI, 21%; SK-MEL-2, 19%; 67%; SK-MEL-5, 32%; UACC-62, 33%), Ovarian (IGROV1, 15%; IGROV-4, 10%; OVCAR-8, 23%), Renal (CAKI-1, 16%; SN-12C, 11%; UO-31, 29%), Prostate (PC-3, 18%), Breast (MCF-7, 17%; MDA-MB-231/ATCC, 13%; T-47D, 36%). | 89.35 |
8 | 15/59 | Leukemia (RPMI-8226, 13%), Non-Small Cell Lung (EKVX, 15%; NCI-H226, 11%; NCI-H322M, 15%; NCI-H522, 48%), CNS (SF-268, 15%; SF-539, 12%;), Renal (CAKI-1, 14%; RXF 393, 10%; SN-12C, 10%; UO-31, 25%), Breast (MCF-7, 11%; MDA-MB-231/ATCC, 15%; HS-578T, 15%; MDA-MB-468, 19%). | 96.77 |
9 | 28/59 | Leukemia (CCRF-CEM, 13%; K-562, 37%, MOLT-4, 14%; SR, 51%), Non-Small Cell Lung (A549/ATCC, 15%; EKVX, 10%; NCI-H226, 16%; NCI-H522, 58%), Colon (HCT-15, 11%; HT-29, 14%; KM-12, 14%), CNS (SF-268, 22%; SNB -19, 11%; SNB-75, 29%), Melanoma (LOX IMVI, 18%; MDA-MB-435, 54%; SK-MEL-5, 26%; UACC-62, 22%), Ovarian (OVCAR-3, 21%), Renal (CAKI-1, 36%; RXF 393, 14%; UO-31, 20%), Prostate (PC-3, 11%), Breast (MCF-7, 41%; MDA-MB-231/ATCC, 11%; HS-578T, 12%; T-47D, 19%; MDA-MB-468, 19%). | 88.50 |
10 | 6/59 | Non-small cell Lung (EKVX, 10%; NCI-H322M, 14%), CNS (SF-268, 14%; U-251, 15%), and Renal (CAKI-1, 16%; UO-31, 20%). | 100.92 |
11 | 17/59 | NSC Lung (NCI-H522, 52%), Colon (HCT-116, 20%), C.N.S. (SF-268, 25%; SF-539; 28%; SNB-19, 15%; SNB-75, 22%; U-251, 20%), Melanoma (SK-MEL-5, 10%), Ovarian (OVCAR-5, 12%), Renal (CAKI-1, 21%; RXF 393, 16%; UO-31, 21%), Breast (M.C.F.-7, 10%; MDA-MB-231/ATCC, 25%; HS-578T, 19%; T-47D, 11%; MDA-MB-468, 19%). | 94.54 |
12 | 25/59 | Leukemia (SR, 28%), N.S.C. Lung (NCI-H23, 17%; NCI-H522, 62%), Colon (HCT-116, 17%; KM-12, 30%), CNS (SF-268, 64%; SF-539; 64%; SNB-19, 49%; SNB-75, 39%; U-251, 26%), Melanoma (LOX IMVI, 20%; MALME-3M, 30%; M14, 11%; MDA-MB-435, 30%; SK-MEL-5, 32%; UACC-62, 17%), Ovarian (OVCAR-5, 14%), Renal (786-0, 15%; CAKI-1, 16%; RXF 393, 30%), Breast (MDA-MB-231/ATCC, 28%; HS-578T, 11%; BT-549, 57%; T-47D, 62%; MDA-MB-468, 27%). | 88.40 |
13 | 8/59 | Leukemia (S.R., 12%), C.N.S. (SNB-75, 13%), Renal (CAKI-1, 15%; UO-31, 24%), Breast (M.C.F.-7, 11%; MDA-MB-231/ATCC, 11%; T-47D, 15%; MDA-MB-468, 16%) | 97.44 |
Imatinib | 20/59 | Leukemia (MOLT-4, 18%; PRMI-8226, 12.6%; SR, 14.6%), N.S.C. Lung (EKVX, 15.7%; NCI-H226, 10.6%; NCI-H23, 17.1%), Colon (HCT-116, 18.6%; HCT-15, 11.5%; HT-29, 47.1%), CNS (SF-295, 15.1%; SF-539, 24.5%; U251, 10.6%), Melanoma (LOX IMVI, 11.6%; SK-MEL-5, 22.3%), Renal (A-498, 13.7%), Prostate (PC-3, 10.6%; DU-145, 14.4%), Breast (MDA-MB-231/ATCC, 11.2%; T-47D, 18.6%; MDA-MB-468, 29.1%) | 92.62% |
Among ethylidene hydrazones, those with a methoxyphenyl group, like 11 and 12 (PCE = 17/59 and 25/59), were much better at killing tumors than those with an unsubstituted phenyl 10 (PCE = 6/59). The introduction of more than two methoxy groups to the phenyl ring, as in compound 13, slightly increased its effectiveness against tumors (PCE = 8/59) compared to unsubstituted phenyl 10 (PCE = 6/59); however, it was not as potent as methoxyphenyl 11 and 12, which had PCEs of 17/59 and 25/59, respectively. Hydrazones 4, 5, and 8 kill tumor cells more effectively (PCE = 9/59, 29/59, and 15/59, respectively) than the comparable ethylidene hydrazones 10, 11, and 13 (PCE = 6/59, 17/59, and 8/59, respectively).
Compound | Subpanel tumor cell lines | MG_MIDa | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Activity | Leukemia | NSC lung cancer | Colon cancer | CNS cancer | Melanoma | Ovarian cancer | Renal cancer | Prostate cancer | Breast cancer | ||
a aFull panel mean-graph midpoint (μM); c Compounds showed values > 100 μM; mean 50% cell growth inhibition (GI50); total cell growth inhibition (TGI); median lethal concentration (LC50); Mean GI50 graph midpoints (GI50 MG_MID). | |||||||||||
5 | GI50 | 0.384 | 1.059 | 1.557 | 1.494 | 1.501 | 15.11 | 1.917 | 0.886 | 1.23 | 1.096 |
TGI | 68.371 | c | c | c | 59.09 | c | 91.54 | c | 84.17 | 89.24 | |
LC50 | c | c | c | c | c | c | c | c | c | c | |
Erlotinib | GI50 | 27.85 | 13.11 | 51.68 | 16.99 | 23.74 | 5.52 | 2.46 | 20.90 | 24.72 | 7.68 |
TGI | 96.57 | 73.76 | c | 82.11 | 77.89 | 74.41 | 42.59 | c | 70.53 | 66.3 | |
LC50 | c | 97.71 | c | c | 93.31 | 97.06 | 89.15 | c | 96.43 | 95.6 | |
Gefitinib | GI50 | 2.56 | 2.05 | 5.23 | 5.64 | 3.68 | 3.05 | 1.41 | 3.29 | 4.67 | 2.10 |
TGI | 12.07 | 13.86 | 18.47 | 19.62 | 12.49 | 33.29 | 12.50 | 31.62 | 18.62 | 14.3 | |
LC50 | 93.85 | 94.68 | 51.74 | 50.56 | 36.40 | 83.58 | 52.82 | 89.72 | 52.47 | 51.9 |
Subpanel tumor cell lines | GI50 (μM) | ||
---|---|---|---|
5 | Erlotinib | Gefitinib | |
a nt = not tested; c compounds showed values > 100 μM. | |||
Leukemia | |||
CCRF-CEM | 0.196 | 15.84 | 5.01 |
HL-60(TB(K-562)) | 0.412 | 5.01 | 5.01 |
0.592 | 15.48 | 2.51 | |
MOLT-4 | 0.372 | 5.01 | 3.98 |
RPMI-8226 | 0.521 | 5.01 | 1.58 |
SR | 0.212 | 6.30 | 3.16 |
![]() |
|||
Non-small cell lung cancer | |||
A549/ATCC | 1.57 | 7.94 | 7.94 |
EKVX | 0.650 | 0.005 | 0.005 |
HOP-62 | 0.961 | 12.58 | 10.00 |
HOP-92 | nt | 6.30 | 7.94 |
NCI-H226 | 0.894 | 6.30 | 15.84 |
NCI-H23 | 1.96 | 19.95 | 15.84 |
NCI-H322M | 0.575 | 0.05 | 0.08 |
NCI-H460 | 0.424 | 5.01 | 6.30 |
NCI-H522 | 2.40 | 1.00 | 6.30 |
![]() |
|||
Colon cancer | |||
COLO 205 | 1.51 | 31.62 | 6.30 |
HCC-2998 | 0.882 | 79.34 | 10.00 |
HCT-116 | 0.363 | 5.01 | 7.94 |
HCT-15 | 3.62 | 3.16 | 5.01 |
HT29 | 3.01 | 50.11 | 3.98 |
KM12 | 0.569 | 63.09 | 7.94 |
SW-620 | 0.949 | 5.01 | 7.94 |
![]() |
|||
CNS cancer | |||
SF-268 | 0.766 | 19.95 | 7.94 |
SF-295 | 1.47 | 15.84 | 1.99 |
SF-539 | 1.26 | 12.58 | 10.00 |
SNB-19 | 2.10 | 3.98 | 12.58 |
SNB-75 | 2.86 | 12.58 | 6.30 |
U251 | 0.510 | 19.95 | 10.00 |
![]() |
|||
Melanoma | |||
LOX IMVI | 0.387 | 5.01 | 7.94 |
MALME-3M | 1.09 | 5.01 | 3.16 |
M14 | 0.452 | 6.30 | 5.01 |
MDA-MB-435 | 2.07 | 15.84 | 3.16 |
SK-MEL-2 | 2.41 | 12.58 | 12.58 |
SK-MEL-28 | 1.62 | 31.62 | 0.31 |
SK-MEL-5 | 1.57 | 15.84 | 3.98 |
UACC-257 | 3.03 | 100 | 6.30 |
UACC-62 | 0.886 | 1.25 | 5.01 |
![]() |
|||
Ovarian cancer | |||
IGROV1 | 0.785 | 0.25 | 0.20 |
OVCAR-3 | 0.287 | 3.16 | 5.01 |
OVCAR-4 | 0.311 | 19.95 | 7.94 |
OVCAR-5 | 2.09 | 19.95 | 10.00 |
OVCAR-8 | 0.932 | 7.94 | 10.00 |
NCI/ADR-RES | c | 6.30 | 12.58 |
SK-OV-3 | 1.32 | 0.39 | 0.63 |
![]() |
|||
Renal cancer | |||
786-0 | 1.84 | 5.01 | 7.94 |
A498 | nt | 1.58 | 0.40 |
ACHN | 1.58 | 0.15 | 0.20 |
CAKI-1 | 1.02 | 0.10 | 0.16 |
RXF 393 | 2.50 | 6.30 | 5.01 |
SN12C | 1.93 | 6.3 | 6.30 |
TK-10 | 1.66 | 0.10 | 0.10 |
UO-31 | 2.89 | 1.99 | 1.25 |
![]() |
|||
Prostate cancer | |||
PC-3 | 0.829 | 50.11 | 0.79 |
DU-145 | 0.944 | 1.58 | 2.51 |
![]() |
|||
Breast cancer | |||
MCF7 | 0.457 | 100 | 10.00 |
MDA-MB-231/ATCC | 0.643 | 1.99 | 12.58 |
HS 578T | 2.11 | 6.30 | 10.00 |
BT-549 | 2.68 | 39.81 | 7.94 |
T-47D | 0.925 | 3.16 | 6.30 |
MDA-MB-468 | 0.524 | 0.20 | 0.01 |
Compound no. | IC50a nM | IC50a (μM) | |||
---|---|---|---|---|---|
COX-2 inhibition | EGFR inhibition | HER2 inhibition | CDK9 inhibition | WI138 | |
5 | 3.32 ± 0.06 (μM) | 84.39 ± 2.07 | 53.91 ± 1.32 | 146.9 ± 3.60 | 45.326 ± 2.66 |
6 | 4.47 ± 0.09 (μM) | 51.52 ± 1.26 | 44.13 ± 1.08 | 96.07 ± 2.35 | 27.772 ± 1.63 |
7 | 50.48 ± 1.06 (μM) | 594.45 ± 14.5 | 387.01 ± 9.50 | 155.4 ± 3.81 | — |
9 | 15.41 ± 0.32 (μM) | 377.53 ± 9.26 | 228.53 ± 5.61 | 316.40 ± 7.76 | — |
12 | 21.27 ± 0.44 (μM) | 492.27 ± 12.1 | 110.64 ± 2.71 | 319.8 ± 7.85 | — |
Celecoxib | 0.15 ± 0.003 (μM) | — | — | — | — |
Gefitinib | 53.12 ± 1.30 | 38.81 ± 0.95 | — | ||
Dinaciclib | — | — | — | 53.12 ± 1.30 | |
Doxorubicin | — | — | — | — | 9.57 ± 0.59 |
Compound no. | %G0-G1 | %S | %G2-M | Comment |
---|---|---|---|---|
Five/T-47D | 46.31 | 27.42 | 26.27 | Cell growth arrest at the G2/M phase |
DMSO/T-47D | 61.11 | 32.29 | 6.6 | — |
6/MOLT4 | 89.04 | 9.56 | 1.40 | Cell growth arrest at the G1 phase |
DMSO/MOLT4 | 61.37 | 22.54 | 16.09 | — |
Compound no. | Apoptosis | Necrosis | ||
---|---|---|---|---|
Total | Early | Late | ||
5/T-47D | 31.07 | 9.28 | 14.75 | 7.04 |
DMSO/T-47D | 2.37 | 0.37 | 0.14 | 1.86 |
6/MOLT4 | 35.06 | 19.22 | 12.61 | 3.23 |
DMSO/MOLT4 | 1.71 | 0.55 | 0.31 | 0.85 |
Compound | Ligand | Receptor | Interaction | Distance | Binding affinities (kcal mol−1) |
---|---|---|---|---|---|
EGFR (PDB: 1XKK) | |||||
5 | C 15 | OD2 ASP 855 (A) | H-donor | 3.42 | −8.513 |
O 40 | O SER 720 (A) | H-donor | 3.01 | ||
O 26 | N MET 793 (A) | H-acceptor | 3.54 | ||
O 36 | HA ASP 855 (A) | H-acceptor | 3.33 | ||
6 | N 1 | O LEU 788 (A) | H-donor | 3.22 | −8.109 |
O 20 | N MET 793 (A) | H-acceptor | 3.67 | ||
![]() |
|||||
HER2 (PDB: 7PCD) | |||||
5 | O 38 | O PHE 864 (A) | H-acceptor | 3.83 | −9.159 |
N 21 | HZ1 LYS 753 (A) | H-acceptor | 3.84 | ||
O 14 | OG1 THR 862 (A) | H-acceptor | 3.35 | ||
O 26 | N MET 801 (A) | H-acceptor | 3.38 | ||
N 38 | O LEU 796 (A) | H-donor | 3.1 | ||
6 | O 20 | N MET 801 (A) | H-acceptor | 3.23 | −7.854 |
O 24 | NZ LYS 753 (A) | H-acceptor | 3.56 | ||
N 27 | O LYS 860 (A) | H-acceptor | 3.51 | ||
O 35 | N ARG 784 (A) | H-acceptor | 4.09 | ||
![]() |
|||||
CDK9 (PDB: 3BLR) | |||||
5 | O 26 | N CYS 106 (A) | H-acceptor | 3.47 | −7.425 |
N 38 | OD1 ASP 109 (A) | H-donor | 2.96 | ||
6 | N 1 | OD2 ASP 109 (A) | H-donor | 2.92 | −7.656 |
O 20 | N CYS 106 (A) | H-acceptor | 3.12 | ||
O 33 | N LYS 151 (A) | H-acceptor | 4.09 |
![]() | ||
Fig. 6 3D interaction poses of compound 5 and compound 6 within the active sites of (A and B) HER2, (C and D) EGFR, and (E and F) CDK9. Compound 5 is depicted in orange, and compound 6 is in yellow. |
Quinazoline 6 exhibits a slightly weaker binding affinity of −8.1 kcal mol−1, forming fewer hydrogen bonds within the active site. It acts as a hydrogen bond donor with LEU788 and an acceptor with MET793. The interaction with MET793 in the ATP-binding pocket is favorable, but the lower number of hydrogen bonds suggests a slightly weaker interaction than compound 5. Schiff base 6 also benefits from hydrophobic interactions with a broader range of residues, including LEU718, VAL726, ALA743, LYS745, THR790, LEU792, ARG841, and THR854, contributing to its overall binding stability (Fig. 6D).
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4ra07174c |
This journal is © The Royal Society of Chemistry 2025 |