Themed collection Induced-Proximity Pharmacology

23 items
Opinion

Property-based optimisation of PROTACs

PROTACs are an emerging therapeutic approach towards targeted protein degradation. This article examines the leading examples of this modality that are in clinical development through the prism of their physicochemical properties.

Graphical abstract: Property-based optimisation of PROTACs
From the themed collection: Induced-Proximity Pharmacology
Opinion

Synthetic modification of protein surfaces to mediate induced-proximity pharmacology

Ligand-directed site-specific covalent modification of protein surfaces will advance synthetic re-wiring of biological pathways.

Graphical abstract: Synthetic modification of protein surfaces to mediate induced-proximity pharmacology
From the themed collection: Induced-Proximity Pharmacology
Review Article

Exploration of degrons and their ability to mediate targeted protein degradation

Degrons are regions of a protein that are required to initiate their degradation by cellular machinery.

Graphical abstract: Exploration of degrons and their ability to mediate targeted protein degradation
From the themed collection: Induced-Proximity Pharmacology
Review Article

Development of PROTACs targeting estrogen receptor: an emerging technique for combating endocrine resistance

ER PROTACs emerge as a hopeful and innovative strategy for combating endocrine-resistant breast cancer.

Graphical abstract: Development of PROTACs targeting estrogen receptor: an emerging technique for combating endocrine resistance
From the themed collection: Induced-Proximity Pharmacology
Review Article

Small molecule targeted protein degradation via the UPS: venturing beyond E3 substrate receptors

As the field of targeted protein degradation has advanced, it has expanded beyond traditional recruitment to E3 substrate receptors to new approaches involving recruitment to a variety of other components within the ubiquitin proteasome system.

Graphical abstract: Small molecule targeted protein degradation via the UPS: venturing beyond E3 substrate receptors
From the themed collection: Emerging Investigators
Review Article

Recent insights of PROTAC developments in inflammation-mediated and autoimmune targets: a critical review

A comprehensive outlook of PROTAC breakthroughs in targeting anti-inflammatory and auto-immune diseases as promising therapeutic approaches for various unresolved disorders.

Graphical abstract: Recent insights of PROTAC developments in inflammation-mediated and autoimmune targets: a critical review
From the themed collection: Induced-Proximity Pharmacology
Open Access Research Article

Niclosamide: CRL4AMBRA1 mediated degradation of cyclin D1 following mitochondrial membrane depolarization

Niclosamide, an FDA-approved anthelmintic drug, known to uncouple the mitochondria induces cyclin D1 degradation via CRL4AMBRA1. We find a striking correlation between the two processes and that it is observed amongst various compounds.

Graphical abstract: Niclosamide: CRL4AMBRA1 mediated degradation of cyclin D1 following mitochondrial membrane depolarization
From the themed collection: Induced-Proximity Pharmacology
Research Article

VHL-independent degradation of hepatitis B virus e antigen (HBeAg) by VHL-binding chimeric small molecules

Chimeric small molecule LH-3, designed to recruit the VHL E3 ligase, degrades HBV protein HBeAg through a largely VHL-independent mechanism. Virological assessment reveals enhanced efficacy against an inhibitor-resistant strain of the virus.

Graphical abstract: VHL-independent degradation of hepatitis B virus e antigen (HBeAg) by VHL-binding chimeric small molecules
From the themed collection: Induced-Proximity Pharmacology
Accepted Manuscript - Research Article

Topical BET PROTACs for locally restricted protein degradation in the lung

From the themed collection: Induced-Proximity Pharmacology
Research Article

In vitro and in vivo ADME of heterobifunctional degraders: a tailored approach to optimize DMPK properties of PROTACs©

This study suggests a tailored in vitro DMPK discovery assay cascade and frontloading in vivo studies. It also underlines the need for inclusion of surrogate permeability descriptors and experimentally determined values for IVIVE of CLint.

Graphical abstract: In vitro and in vivo ADME of heterobifunctional degraders: a tailored approach to optimize DMPK properties of PROTACs©
From the themed collection: Induced-Proximity Pharmacology
Research Article

Insights from protein frustration analysis of BRD4–cereblon degrader ternary complexes show separation of strong from weak degraders

Strong ligand directed degraders stabilize the hydrophobic residue burial between the E3 ligase and the target protein to be degraded. Weak degraders destabilize the ternary complex through multiple mechanisms.

Graphical abstract: Insights from protein frustration analysis of BRD4–cereblon degrader ternary complexes show separation of strong from weak degraders
From the themed collection: Induced-Proximity Pharmacology
Research Article

Structure-guided design of a truncated heterobivalent chemical probe degrader of IRE1α

The first degrader of an ER-resident protein (IRE1α) is described with properties more akin to a molecular glue than a traditional PROTAC, thus challenging the dogma of categorizing degrader modalities based on their physicochemical features.

Graphical abstract: Structure-guided design of a truncated heterobivalent chemical probe degrader of IRE1α
From the themed collection: Emerging Investigators
Research Article

Light-activatable photochemically targeting chimeras (PHOTACs) enable the optical control of targeted protein degradation of HDAC6

The first light-activatable photochemically targeting chimeras (PHOTACs) designed for the targeted degradation of histone deacetylase 6 are reported.

Graphical abstract: Light-activatable photochemically targeting chimeras (PHOTACs) enable the optical control of targeted protein degradation of HDAC6
From the themed collection: Induced-Proximity Pharmacology
Research Article

Expanding the reaction toolbox for nanoscale direct-to-biology PROTAC synthesis and biological evaluation

High-throughput chemistry (HTC) and direct-to-biology (D2B) platforms allow for plate-based compound synthesis and biological evaluation of crude mixtures in cellular assays.

Graphical abstract: Expanding the reaction toolbox for nanoscale direct-to-biology PROTAC synthesis and biological evaluation
From the themed collection: Emerging Investigators
Open Access Research Article

Development of p300-targeting degraders with enhanced selectivity and onset of degradation

p300 and CBP are paralogous epigenetic regulators and promising therapeutic targets for which TPD offers the potential to achieve paralog-selective degradation.

Graphical abstract: Development of p300-targeting degraders with enhanced selectivity and onset of degradation
From the themed collection: Induced-Proximity Pharmacology
Open Access Research Article

Site-specific molecular glues for the 14-3-3/Tau pS214 protein–protein interaction via reversible covalent imine tethering

The unique molecular topologies of the two different binding sites of the Tau/14-3-3 protein–protein interaction were exploited to develop selective dynamic covalent molecular glues for the Tau pS214 site.

Graphical abstract: Site-specific molecular glues for the 14-3-3/Tau pS214 protein–protein interaction via reversible covalent imine tethering
From the themed collection: Induced-Proximity Pharmacology
Research Article

Leveraging efficiency metrics for the optimization of CELMoDs™ as cereblon-based molecular glue degraders

Disclosure of composite efficiency scores for protein degraders that account for potency and depth of degradation.

Graphical abstract: Leveraging efficiency metrics for the optimization of CELMoDs™ as cereblon-based molecular glue degraders
From the themed collection: Induced-Proximity Pharmacology
Open Access Research Article

Application of a bivalent “click” approach to target tyrosyl-DNA phosphodiesterase 1 (TDP1)

Application of copper-catalyzed azide–alkyne cycloaddition (CuAAC) “click” reactions assemble bivalent proteolysis-targeting chimeras (PROTACs) constituents targeting tyrosyl-DNA phosphodiesterase 1 (TDP1).

Graphical abstract: Application of a bivalent “click” approach to target tyrosyl-DNA phosphodiesterase 1 (TDP1)
From the themed collection: Induced-Proximity Pharmacology
Open Access Research Article

Exploiting the DCAF16–SPIN4 interaction to identify DCAF16 ligands for PROTAC development

An HTRF assay was developed to measure the DCAF16–SPIN4 interaction and was subsequently employed to screen for DCAF16 recruiters. A hit compound, 2G07, was identified and further optimized into a PROTAC for the targeted degradation of FKBP12.

Graphical abstract: Exploiting the DCAF16–SPIN4 interaction to identify DCAF16 ligands for PROTAC development
From the themed collection: Emerging Investigators
Research Article

Hydrophobic CPP/HDO conjugates: a new frontier in oligonucleotide-warheaded PROTAC delivery

A novel hydrophobic cell-penetrating peptide (CPP) and heteroduplex oligonucleotide (HDO)-conjugated PROTAC, CPP/HDO-PROTAC, was designed to enhance its intracellular delivery and degradation efficiency.

Graphical abstract: Hydrophobic CPP/HDO conjugates: a new frontier in oligonucleotide-warheaded PROTAC delivery
From the themed collection: Induced-Proximity Pharmacology
Open Access Research Article

Novel PROTAC probes targeting KDM3 degradation to eliminate colorectal cancer stem cells through inhibition of Wnt/β-catenin signaling

We designed and synthesized novel IOX1-based PROTACs, which can selectively degrade KDM3A and KDM3B to eliminate colorectal cancer stem cells through inhibition of Wnt signaling.

Graphical abstract: Novel PROTAC probes targeting KDM3 degradation to eliminate colorectal cancer stem cells through inhibition of Wnt/β-catenin signaling
From the themed collection: Induced-Proximity Pharmacology
Research Article

A novel hydrophobic tag leads to the efficient degradation of programmed death-ligand 1

The interaction of PD-L1 and PD-1 transmits the inhibitory signal to reduce the proliferation of antigen-specific T-cells in lymph nodes.

Graphical abstract: A novel hydrophobic tag leads to the efficient degradation of programmed death-ligand 1
From the themed collection: Induced-Proximity Pharmacology
Research Article

Discovery of first-in-class PROTACs targeting maternal embryonic leucine zipper kinase (MELK) for the treatment of Burkitt lymphoma

Discovery of the first-in-class PROTACs targeting maternal embryonic leucine zipper kinase (MELK) for the treatment of Burkitt lymphoma.

Graphical abstract: Discovery of first-in-class PROTACs targeting maternal embryonic leucine zipper kinase (MELK) for the treatment of Burkitt lymphoma
From the themed collection: Induced-Proximity Pharmacology
23 items

About this collection

This themed collection, guest edited by Dr Lyn Jones (Dana-Farber Cancer Institute, US), Dr Ingo Hartung (Merck Healthcare KGaA, Germany) and Professor Lindsey James (University of North Carolina at Chapel Hill, US), highlights the latest medicinal chemistry advances in the area of induced-proximity pharmacology.
This collection will cover the design and optimization of molecular glue and heterobifunctional degraders (e.g. PROTACs), structure-activity/property/toxicity relationships, development of novel protein ligands (including peptides or oligonucleotides) to enable the design of molecules that induce biomolecule proximity, elucidation of molecular mechanisms of induced-proximity pharmacology using chemical techniques that aid drug development, and much more. 
New articles will be added to the collection upon publication. Please return to this page frequently to see the collection grow.

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