Themed collection Most popular 2024 physical chemistry articles


Understanding electrochemical interfaces through comparing experimental and computational charge density–potential curves
A deep understanding of electrode–electrolyte interfaces requires the development of modelling protocols spanning from the local microscale to system-level macroscopic sizes which can be validated by comparison with high-quality experimental results.
Chem. Sci., 2024,15, 6643-6660
https://doi.org/10.1039/D4SC00746H

Recent progress in ion-regulated organic room-temperature phosphorescence
In this perspective, the progress in ion-regulated organic RTP materials and described the roles of ions, including ion–π interactions, electrostatic interactions, and coordinate interactions, have been summarized.
Chem. Sci., 2024,15, 4222-4237
https://doi.org/10.1039/D3SC06931A

The pursuit of accurate predictive models of the bioactivity of small molecules
Each step in model development affects its accuracy.
Chem. Sci., 2024,15, 1938-1952
https://doi.org/10.1039/D3SC05534E

State-of-the-art local correlation methods enable affordable gold standard quantum chemistry for up to hundreds of atoms
We review the current capabilities of local electron correlation methods up to the gold standard CCSD(T) level, which are now capable of routinely reaching large systems of practical interest in p- and d-block, as well as surface and biochemistry.
Chem. Sci., 2024,15, 14556-14584
https://doi.org/10.1039/D4SC04755A

Automation and machine learning augmented by large language models in a catalysis study
AI and automation are revolutionizing catalyst discovery, shifting from manual methods to high-throughput digital approaches, enhanced by large language models.
Chem. Sci., 2024,15, 12200-12233
https://doi.org/10.1039/D3SC07012C

Delocalization error poisons the density-functional many-body expansion
Self-interaction error leads to runaway error accumulation when density functional theory is used in conjunction with the many-body expansion.
Chem. Sci., 2024,15, 19893-19906
https://doi.org/10.1039/D4SC05955G

Core-electron contributions to the magnetic response of molecules with heavy elements and their significance in aromaticity assessments
This study delves into the magnetic response of core electrons and their influence on the global magnetic response of planar and three-dimensional systems containing heavy elements, employing the removing valence electron (RVE) approximation.
Chem. Sci., 2024,15, 12906-12921
https://doi.org/10.1039/D4SC02269F

Machine-learned molecular mechanics force fields from large-scale quantum chemical data
A generalized and extensible machine-learned molecular mechanics force field trained on over 1.1 million QC data applicable for drug discovery applications. Figure reproduced from the arXiv:201001196 preprint under the arXiv non-exclusive license.
Chem. Sci., 2024,15, 12861-12878
https://doi.org/10.1039/D4SC00690A

Fast, efficient, narrowband room-temperature phosphorescence from metal-free 1,2-diketones: rational design and the mechanism
Fast room-temperature phosphorescence with high quantum yields up to 38% in solution from metal-free organic 1,2-diketones is reported, along with the mechanism and molecular design principles governing the fast phosphorescence.
Chem. Sci., 2024,15, 10784-10793
https://doi.org/10.1039/D4SC02841D

Fine-tuning large language models for chemical text mining
Extracting knowledge from complex chemical texts is essential for both experimental and computational chemists. Fine-tuned large language models (LLMs) can serve as flexible and effective extractors for automated data acquisition.
Chem. Sci., 2024,15, 10600-10611
https://doi.org/10.1039/D4SC00924J

nach0: multimodal natural and chemical languages foundation model
nach0 is a novel multi-domain and multi-task language model pre-trained on unlabeled text from scientific literature, patents, and molecule strings to incorporate a range of chemical and linguistic knowledge.
Chem. Sci., 2024,15, 8380-8389
https://doi.org/10.1039/D4SC00966E

DiffBindFR: an SE(3) equivariant network for flexible protein–ligand docking
DiffBindFR, a diffusion model based flexible full-atom protein–ligand docking tool, demonstrates its superior docking and side-chain refinement accuracy with reliable physical plausibility.
Chem. Sci., 2024,15, 7926-7942
https://doi.org/10.1039/D3SC06803J

Dynamic sampling in autonomous process optimization
Autonomous process optimization (APO) is a technology that has recently found utility in a multitude of process optimization challenges.
Chem. Sci., 2024,15, 7160-7169
https://doi.org/10.1039/D3SC06884F

All-visible-light-driven stiff-stilbene photoswitches
This work outlines a simple synthetic strategy providing formylated stiff-stilbenes. The photoisomerization of formylated stiff-stilbenes could be fully controlled using visible light and is accompanied by a high photostationary state distribution.
Chem. Sci., 2024,15, 6763-6769
https://doi.org/10.1039/D4SC00983E

Unravelling the role of spin–vibrational coupling in designing high-performance pentagonal bipyramidal Dy(III) single ion magnets
Detailed DFT and ab initio calculations unveil the correlation between spin–phonon vibrations and blocking temperature to provide design clues to improve single-ion magnet characteristics in the pseudo-D5h family of Dy(III) SMMs.
Chem. Sci., 2024,15, 6465-6477
https://doi.org/10.1039/D4SC00823E

Delocalisation enables efficient charge generation in organic photovoltaics, even with little to no energetic offset
Simulations reveal that both charge and exciton delocalisation can significantly improve the efficiency of charge generation in organic photovoltaics and explain the failure of classical hopping approaches.
Chem. Sci., 2024,15, 4779-4789
https://doi.org/10.1039/D3SC05409H

Structure and dynamics of liquid water from ab initio simulations: adding Minnesota density functionals to Jacob's ladder
This study incorporates Minnesota density functionals into the current knowledge of describing the structural and dynamical properties of liquid water through ab initio molecular dynamics, with M06-2X(-D3) functionals showing the most promise.
Chem. Sci., 2024,15, 4434-4451
https://doi.org/10.1039/D3SC05828J

What defines electrophilicity in carbonyl compounds
The origin of the electrophilicity of a series of cyclohexanones and benzaldehydes is investigated using the activation strain model and quantitative Kohn–Sham molecular orbital (MO) theory.
Chem. Sci., 2024,15, 3980-3987
https://doi.org/10.1039/D3SC05595G

Busting the myth of spontaneous formation of H2O2 at the air–water interface: contributions of the liquid–solid interface and dissolved oxygen exposed
The air–water interface is not the site for H2O2(aq) formation; instead, it takes place at the solid–water interface.
Chem. Sci., 2024,15, 3093-3103
https://doi.org/10.1039/D3SC06534K

Stereo effects for efficient synthesis of orange-red multiple resonance emitters centered on a pyridine ring
Despite theoretical difficulties, we herein for the first time demonstrate an effective concept for the synthesis of an orange-red multiple resonance (MR) emitter centered on a pyridine ring via stereo effects.
Chem. Sci., 2024,15, 3148-3154
https://doi.org/10.1039/D3SC06470K

PoseBusters: AI-based docking methods fail to generate physically valid poses or generalise to novel sequences
PoseBusters assesses molecular poses using steric and energetic criteria. We find that classical protein-ligand docking tools currently still outperform deep learning-based methods.
Chem. Sci., 2024,15, 3130-3139
https://doi.org/10.1039/D3SC04185A

Substituting density functional theory in reaction barrier calculations for hydrogen atom transfer in proteins
Hydrogen atom transfer (HAT) reactions, as they occur in many biological systems, are here predicted by machine learning.
Chem. Sci., 2024,15, 2518-2527
https://doi.org/10.1039/D3SC03922F

Determining the key vibrations for spin relaxation in ruffled Cu(II) porphyrins via resonance Raman spectroscopy
By using resonance Raman spectroscopy and temperature-dependent pulse EPR spectroscopy, we show that bond stretching vibrational modes > 200 cm−1 drive spin relaxation in planar and ruffled copper porphyrins.
Chem. Sci., 2024,15, 2380-2390
https://doi.org/10.1039/D3SC05774G

Artificial design of organic emitters via a genetic algorithm enhanced by a deep neural network
An artificial molecular design workflow using a genetic algorithm with molecular strings and artificial neural networks applied to organic molecules with inverted singlet-triplet gaps finds 1000 candidates with appreciable fluorescence rates.
Chem. Sci., 2024,15, 2618-2639
https://doi.org/10.1039/D3SC05306G

Machine learning from quantum chemistry to predict experimental solvent effects on reaction rates
A machine learning model, trained on a large COSMO-RS dataset, enables accurate and rapid predictions of solvation effects on reaction rates for diverse reactions and solvents only based on atom-mapped reaction SMILES and solvent SMILES.
Chem. Sci., 2024,15, 2410-2424
https://doi.org/10.1039/D3SC05353A

Modular, multi-robot integration of laboratories: an autonomous workflow for solid-state chemistry
This study presents a modular autonomous workflow for solid-state chemistry comprising three separate robots, allowing automated powder X-ray diffraction to underpin crystalline materials discovery.
Chem. Sci., 2024,15, 2456-2463
https://doi.org/10.1039/D3SC06206F

CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training
Here we propose CarsiDock, a deep learning-guided docking approach that leverages large-scale pre-training of millions of docking complexes for protein–ligand binding pose generation.
Chem. Sci., 2024,15, 1449-1471
https://doi.org/10.1039/D3SC05552C

Symmetry breaking charge transfer leading to charge separation in a far-red absorbing bisstyryl-BODIPY dimer
Symmetry breaking charge transfer followed by charge separation with appreciable lifetimes has been demonstrated in a newly synthesized bisstyrylBODIPY dimer in polar solvents using pump-probe and other techniques.
Chem. Sci., 2024,15, 906-913
https://doi.org/10.1039/D3SC05034C
About this collection
This specially curated collection highlights some of the most popular articles from 2024 in the fields of physical, theoretical and computational, and biophysical chemistry. The collection presents some outstanding contributions to the field, ranging from insights into delocalization errors within the density-functional many-body expansion to visible-light-driven stiff-stilbene photoswitches, and as with all Chemical Science articles – they are all completely free to access and read. We hope you enjoy browsing through this collection.
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